RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 IGSF3O75054 1194 aa8.38□□□□□ -1.07
DEPDC4-208ENST00000549341 GH2P01242 217 aa8.38□□□□□ -1.07
DEPDC4-208ENST00000549341 HOXC6P09630 235 aa8.38□□□□□ -1.07
DEPDC4-208ENST00000549341 VCAM1P19320 739 aa8.38□□□□□ -1.07
DEPDC4-208ENST00000549341 SMCPP49901 116 aaPredicted RBP8.38□□□□□ -1.07
DEPDC4-208ENST00000549341 KCNQ1P51787 676 aa8.38□□□□□ -1.07
DEPDC4-208ENST00000549341 GSTO1P78417 241 aa8.38□□□□□ -1.07
DEPDC4-208ENST00000549341 NMIQ13287 307 aaPredicted RBP8.38□□□□□ -1.07
DEPDC4-208ENST00000549341 PRAMEF19Q5SWL8 479 aa8.38□□□□□ -1.07
DEPDC4-208ENST00000549341 USP17L2Q6R6M4 530 aa8.38□□□□□ -1.07
DEPDC4-208ENST00000549341 CYP4X1Q8N118 509 aa8.38□□□□□ -1.07
DEPDC4-208ENST00000549341 ZNF384Q8TF68 577 aa8.38□□□□□ -1.07
DEPDC4-208ENST00000549341 LENG1Q96BZ8 264 aaPredicted RBP8.38□□□□□ -1.07
DEPDC4-208ENST00000549341 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.38□□□□□ -1.07
DEPDC4-208ENST00000549341 NOL10Q9BSC4 688 aaKnown RBP8.38□□□□□ -1.07
DEPDC4-208ENST00000549341 LRFN3Q9BTN0 628 aa8.38□□□□□ -1.07
DEPDC4-208ENST00000549341 XPNPEP3Q9NQH7 507 aa8.38□□□□□ -1.07
DEPDC4-208ENST00000549341 TOR4AQ9NXH8 423 aa8.38□□□□□ -1.07
DEPDC4-208ENST00000549341 HMG20BQ9P0W2 317 aa8.38□□□□□ -1.07
DEPDC4-208ENST00000549341 BTBD7Q9P203 1132 aa8.38□□□□□ -1.07
DEPDC4-208ENST00000549341 GMPR2Q9P2T1 348 aaKnown RBP8.38□□□□□ -1.07
DEPDC4-208ENST00000549341 PI4KBQ9UBF8 816 aa8.38□□□□□ -1.07
DEPDC4-208ENST00000549341 SAP30BPQ9UHR5 308 aaKnown RBP8.38□□□□□ -1.07
DEPDC4-208ENST00000549341 A0A1W2PQ45 241 aaPredicted RBP8.37□□□□□ -1.07
DEPDC4-208ENST00000549341 A0A1W2PQY0 241 aa8.37□□□□□ -1.07
DEPDC4-208ENST00000549341 USP17L15C9J2P7 530 aa8.37□□□□□ -1.07
DEPDC4-208ENST00000549341 USP17L13C9JLJ4 530 aa8.37□□□□□ -1.07
DEPDC4-208ENST00000549341 USP17L11C9JVI0 530 aa8.37□□□□□ -1.07
DEPDC4-208ENST00000549341 USP17L18D6R9N7 530 aa8.37□□□□□ -1.07
DEPDC4-208ENST00000549341 USP17L22D6RA61 530 aa8.37□□□□□ -1.07
DEPDC4-208ENST00000549341 USP17L17D6RBQ6 530 aa8.37□□□□□ -1.07
DEPDC4-208ENST00000549341 USP17L19D6RCP7 530 aa8.37□□□□□ -1.07
DEPDC4-208ENST00000549341 USP17L20D6RJB6 530 aa8.37□□□□□ -1.07
DEPDC4-208ENST00000549341 KIAA0355O15063 1070 aa8.37□□□□□ -1.07
DEPDC4-208ENST00000549341 RNF113AO15541 343 aaKnown RBP8.37□□□□□ -1.07
DEPDC4-208ENST00000549341 PGK1P00558 417 aa8.37□□□□□ -1.07
DEPDC4-208ENST00000549341 PSMA5P28066 241 aa8.37□□□□□ -1.07
DEPDC4-208ENST00000549341 ARID4AP29374 1257 aaPredicted RBP8.37□□□□□ -1.07
DEPDC4-208ENST00000549341 USP17L24Q0WX57 530 aa8.37□□□□□ -1.07
DEPDC4-208ENST00000549341 PTGDRQ13258 359 aa8.37□□□□□ -1.07
DEPDC4-208ENST00000549341 KRT32Q14532 448 aa8.37□□□□□ -1.07
DEPDC4-208ENST00000549341 TMEM31Q5JXX7 168 aa8.37□□□□□ -1.07
DEPDC4-208ENST00000549341 TMED8Q6PL24 325 aaPredicted RBP8.37□□□□□ -1.07
DEPDC4-208ENST00000549341 ALYREFQ86V81 257 aaKnown RBP8.37□□□□□ -1.07
DEPDC4-208ENST00000549341 SPSB2Q99619 263 aa8.37□□□□□ -1.07
DEPDC4-208ENST00000549341 NKX2-4Q9H2Z4 354 aa8.37□□□□□ -1.07
DEPDC4-208ENST00000549341 EPHX3Q9H6B9 360 aa8.37□□□□□ -1.07
DEPDC4-208ENST00000549341 AATFQ9NY61 560 aaKnown RBP eCLIP8.37□□□□□ -1.07
DEPDC4-208ENST00000549341 PHF24Q9UPV7 400 aa8.37□□□□□ -1.07
DEPDC4-208ENST00000549341 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.37□□□□□ -1.07
DEPDC4-208ENST00000549341 FLT1P17948 1338 aa8.36□□□□□ -1.07
DEPDC4-208ENST00000549341 PDS5AQ29RF7 1337 aaKnown RBP8.36□□□□□ -1.07
DEPDC4-208ENST00000549341 CCDC171Q6TFL3 1326 aa8.36□□□□□ -1.07
DEPDC4-208ENST00000549341 ACRP10323 421 aa8.36□□□□□ -1.07
DEPDC4-208ENST00000549341 RARBP10826 455 aa8.36□□□□□ -1.07
DEPDC4-208ENST00000549341 HSPA4P34932 840 aa8.36□□□□□ -1.07
DEPDC4-208ENST00000549341 ZAP70P43403 619 aa8.36□□□□□ -1.07
DEPDC4-208ENST00000549341 NFX1Q12986 1120 aaKnown RBP8.36□□□□□ -1.07
DEPDC4-208ENST00000549341 PLS1Q14651 629 aa8.36□□□□□ -1.07
DEPDC4-208ENST00000549341 RAB3GAP1Q15042 981 aa8.36□□□□□ -1.07
DEPDC4-208ENST00000549341 OLFML2BQ68BL8 750 aa8.36□□□□□ -1.07
DEPDC4-208ENST00000549341 CCDC174Q6PII3 467 aa8.36□□□□□ -1.07
DEPDC4-208ENST00000549341 RNF180Q86T96 592 aa8.36□□□□□ -1.07
DEPDC4-208ENST00000549341 SLC44A5Q8NCS7 719 aa8.36□□□□□ -1.07
DEPDC4-208ENST00000549341 TGFBRAP1Q8WUH2 860 aa8.36□□□□□ -1.07
DEPDC4-208ENST00000549341 APPBP2Q92624 585 aa8.36□□□□□ -1.07
DEPDC4-208ENST00000549341 NSUN4Q96CB9 384 aaKnown RBP8.36□□□□□ -1.07
DEPDC4-208ENST00000549341 LSG1Q9H089 658 aaKnown RBP8.36□□□□□ -1.07
DEPDC4-208ENST00000549341 DHX36Q9H2U1 1008 aaKnown RBP8.36□□□□□ -1.07
DEPDC4-208ENST00000549341 RPAP3Q9H6T3 665 aaPredicted RBP8.36□□□□□ -1.07
DEPDC4-208ENST00000549341 SNRKQ9NRH2 765 aa8.36□□□□□ -1.07
DEPDC4-208ENST00000549341 CXXC1Q9P0U4 656 aaPredicted RBP8.36□□□□□ -1.07
DEPDC4-208ENST00000549341 DACH1Q9UI36 760 aa8.36□□□□□ -1.07
DEPDC4-208ENST00000549341 CTNNA3Q9UI47 895 aa8.36□□□□□ -1.07
DEPDC4-208ENST00000549341 MSRAQ9UJ68 235 aa8.36□□□□□ -1.07
DEPDC4-208ENST00000549341 PALD1Q9ULE6 856 aa8.36□□□□□ -1.07
DEPDC4-208ENST00000549341 DCDC2CA8MYV0 355 aa8.35□□□□□ -1.07
DEPDC4-208ENST00000549341 K7ELQ4 463 aaPredicted RBP8.35□□□□□ -1.07
DEPDC4-208ENST00000549341 HLA-DOAP06340 250 aa8.35□□□□□ -1.07
DEPDC4-208ENST00000549341 LDHCP07864 332 aa8.35□□□□□ -1.07
DEPDC4-208ENST00000549341 ERCC3P19447 782 aa8.35□□□□□ -1.07
DEPDC4-208ENST00000549341 RAB30Q15771 203 aa8.35□□□□□ -1.07
DEPDC4-208ENST00000549341 ZMYM1Q5SVZ6 1142 aa8.35□□□□□ -1.07
DEPDC4-208ENST00000549341 C1orf53Q5VUE5 145 aa8.35□□□□□ -1.07
DEPDC4-208ENST00000549341 SPATA5Q8NB90 893 aa8.35□□□□□ -1.07
DEPDC4-208ENST00000549341 FAM227BQ96M60 508 aa8.35□□□□□ -1.07
DEPDC4-208ENST00000549341 DSCC1Q9BVC3 393 aa8.35□□□□□ -1.07
DEPDC4-208ENST00000549341 MOV10L1Q9BXT6 1211 aaKnown RBP8.35□□□□□ -1.07
DEPDC4-208ENST00000549341 PPP1R12CQ9BZL4 782 aa8.35□□□□□ -1.07
DEPDC4-208ENST00000549341 TANGO6Q9C0B7 1094 aa8.35□□□□□ -1.07
DEPDC4-208ENST00000549341 STARD7Q9NQZ5 370 aa8.35□□□□□ -1.07
DEPDC4-208ENST00000549341 LRP2BPQ9P2M1 347 aa8.35□□□□□ -1.07
DEPDC4-208ENST00000549341 RBM8AQ9Y5S9 174 aaKnown RBP8.35□□□□□ -1.07
DEPDC4-208ENST00000549341 A0A0D9SFI3 127 aa8.34□□□□□ -1.07
DEPDC4-208ENST00000549341 COBLO75128 1261 aa8.34□□□□□ -1.07
DEPDC4-208ENST00000549341 IDH1O75874 414 aaKnown RBP8.34□□□□□ -1.07
DEPDC4-208ENST00000549341 BMP1P13497 986 aa8.34□□□□□ -1.07
DEPDC4-208ENST00000549341 CSF2RAP15509 400 aa8.34□□□□□ -1.07
DEPDC4-208ENST00000549341 MCAMP43121 646 aa8.34□□□□□ -1.07
DEPDC4-208ENST00000549341 NEK4P51957 841 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms