RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 SYTL5Q8TDW5 730 aaPredicted RBP6.22□□□□□ -1.41
VPS29-205ENST00000548539 CCDC74BQ96LY2 380 aa6.22□□□□□ -1.41
VPS29-205ENST00000548539 PLCD4Q9BRC7 762 aa6.22□□□□□ -1.41
VPS29-205ENST00000548539 REV1Q9UBZ9 1251 aa6.22□□□□□ -1.41
VPS29-205ENST00000548539 KLHL3Q9UH77 587 aa6.22□□□□□ -1.41
VPS29-205ENST00000548539 CCDC85CA6NKD9 419 aa6.21□□□□□ -1.42
VPS29-205ENST00000548539 KLF4O43474 513 aa6.21□□□□□ -1.42
VPS29-205ENST00000548539 AKAP8O43823 692 aaKnown RBP6.21□□□□□ -1.42
VPS29-205ENST00000548539 ATE1O95260 518 aa6.21□□□□□ -1.42
VPS29-205ENST00000548539 RAB3GAP1Q15042 981 aa6.21□□□□□ -1.42
VPS29-205ENST00000548539 UBXN11Q5T124 520 aa6.21□□□□□ -1.42
VPS29-205ENST00000548539 NLGN1Q8N2Q7 840 aa6.21□□□□□ -1.42
VPS29-205ENST00000548539 ST7Q9NRC1 585 aa6.21□□□□□ -1.42
VPS29-205ENST00000548539 TCFL5Q9UL49 500 aa6.21□□□□□ -1.42
VPS29-205ENST00000548539 PCDHA5Q9Y5H7 936 aa6.21□□□□□ -1.42
VPS29-205ENST00000548539 FAM86C2PA6NEL3 165 aa6.2□□□□□ -1.42
VPS29-205ENST00000548539 U2SURPO15042 1029 aaKnown RBP6.2□□□□□ -1.42
VPS29-205ENST00000548539 DNAJA2O60884 412 aa6.2□□□□□ -1.42
VPS29-205ENST00000548539 IMPDH2P12268 514 aa6.2□□□□□ -1.42
VPS29-205ENST00000548539 SLURP1P55000 103 aa6.2□□□□□ -1.42
VPS29-205ENST00000548539 NCKAP1LP55160 1127 aa6.2□□□□□ -1.42
VPS29-205ENST00000548539 RAB33AQ14088 237 aa6.2□□□□□ -1.42
VPS29-205ENST00000548539 TNNI3KQ59H18 835 aa6.2□□□□□ -1.42
VPS29-205ENST00000548539 LARP1BQ659C4 914 aaKnown RBP6.2□□□□□ -1.42
VPS29-205ENST00000548539 OVOS1Q6IE37 1185 aa6.2□□□□□ -1.42
VPS29-205ENST00000548539 CELF2-AS1Q8N7Q2 184 aa6.2□□□□□ -1.42
VPS29-205ENST00000548539 DAGLBQ8NCG7 672 aa6.2□□□□□ -1.42
VPS29-205ENST00000548539 OR6P1Q8NGX9 317 aa6.2□□□□□ -1.42
VPS29-205ENST00000548539 TCTN2Q96GX1 697 aa6.2□□□□□ -1.42
VPS29-205ENST00000548539 HDAC8Q9BY41 377 aa6.2□□□□□ -1.42
VPS29-205ENST00000548539 ACTR10Q9NZ32 417 aa6.2□□□□□ -1.42
VPS29-205ENST00000548539 PRR36Q9H6K5 1346 aa6.2□□□□□ -1.42
VPS29-205ENST00000548539 TMEM82A0PJX8 343 aa6.19□□□□□ -1.42
VPS29-205ENST00000548539 FFAR3O14843 346 aa6.19□□□□□ -1.42
VPS29-205ENST00000548539 ZXDAP98168 799 aa6.19□□□□□ -1.42
VPS29-205ENST00000548539 SERINC3Q13530 473 aa6.19□□□□□ -1.42
VPS29-205ENST00000548539 LAPTM5Q13571 262 aa6.19□□□□□ -1.42
VPS29-205ENST00000548539 NBPF6Q5VWK0 638 aa6.19□□□□□ -1.42
VPS29-205ENST00000548539 GALNT18Q6P9A2 607 aa6.19□□□□□ -1.42
VPS29-205ENST00000548539 ZNF655Q8N720 491 aaPredicted RBP6.19□□□□□ -1.42
VPS29-205ENST00000548539 LINC00116Q8NCU8 138 aa6.19□□□□□ -1.42
VPS29-205ENST00000548539 VWCEQ96DN2 955 aa6.19□□□□□ -1.42
VPS29-205ENST00000548539 NBPF4Q96M43 638 aa6.19□□□□□ -1.42
VPS29-205ENST00000548539 USP40Q9NVE5 1235 aa6.19□□□□□ -1.42
VPS29-205ENST00000548539 CDK11AQ9UQ88 783 aaPredicted RBP6.19□□□□□ -1.42
VPS29-205ENST00000548539 TAF6LQ9Y6J9 622 aa6.19□□□□□ -1.42
VPS29-205ENST00000548539 WTIPA6NIX2 430 aaPredicted RBP6.18□□□□□ -1.42
VPS29-205ENST00000548539 NUDT19A8MXV4 375 aa6.18□□□□□ -1.42
VPS29-205ENST00000548539 CHURC1-FNTBB4DL54 471 aa6.18□□□□□ -1.42
VPS29-205ENST00000548539 FKTNO75072 461 aa6.18□□□□□ -1.42
VPS29-205ENST00000548539 CAP1Q01518 475 aa6.18□□□□□ -1.42
VPS29-205ENST00000548539 MLECQ14165 292 aa6.18□□□□□ -1.42
VPS29-205ENST00000548539 NOP9Q86U38 636 aaKnown RBP6.18□□□□□ -1.42
VPS29-205ENST00000548539 PHACTR4Q8IZ21 702 aa6.18□□□□□ -1.42
VPS29-205ENST00000548539 FAM177A1Q8N128 213 aaPredicted RBP6.18□□□□□ -1.42
VPS29-205ENST00000548539 RBBP8NLQ8NC74 664 aaPredicted RBP6.18□□□□□ -1.42
VPS29-205ENST00000548539 SRPK1Q96SB4 655 aaKnown RBP6.18□□□□□ -1.42
VPS29-205ENST00000548539 TNFRSF10DQ9UBN6 386 aa6.18□□□□□ -1.42
VPS29-205ENST00000548539 MEIS3P2A8K0S8 358 aa6.17□□□□□ -1.42
VPS29-205ENST00000548539 SYPP08247 313 aa6.17□□□□□ -1.42
VPS29-205ENST00000548539 MAGEA10P43363 369 aaPredicted RBP6.17□□□□□ -1.42
VPS29-205ENST00000548539 KIR3DS1Q14943 382 aa6.17□□□□□ -1.42
VPS29-205ENST00000548539 LRRFIP1Q32MZ4 808 aaKnown RBP6.17□□□□□ -1.42
VPS29-205ENST00000548539 ARSHQ5FYA8 562 aa6.17□□□□□ -1.42
VPS29-205ENST00000548539 ZPBP2Q6X784 338 aa6.17□□□□□ -1.42
VPS29-205ENST00000548539 FERMT3Q86UX7 667 aa6.17□□□□□ -1.42
VPS29-205ENST00000548539 MICAL1Q8TDZ2 1067 aa6.17□□□□□ -1.42
VPS29-205ENST00000548539 ATG4CQ96DT6 458 aa6.17□□□□□ -1.42
VPS29-205ENST00000548539 MRFAP1L1Q96HT8 127 aa6.17□□□□□ -1.42
VPS29-205ENST00000548539 GMIPQ9P107 970 aa6.17□□□□□ -1.42
VPS29-205ENST00000548539 SIRPGQ9P1W8 387 aa6.17□□□□□ -1.42
VPS29-205ENST00000548539 A0A1W2PQH9 124 aa6.16□□□□□ -1.42
VPS29-205ENST00000548539 FAM221BA6H8Z2 402 aa6.16□□□□□ -1.42
VPS29-205ENST00000548539 FADS2P1A8MWK0 482 aa6.16□□□□□ -1.42
VPS29-205ENST00000548539 B2RBV5 119 aa6.16□□□□□ -1.42
VPS29-205ENST00000548539 PFKLP17858 780 aa6.16□□□□□ -1.42
VPS29-205ENST00000548539 TNFRSF1AP19438 455 aa6.16□□□□□ -1.42
VPS29-205ENST00000548539 GUCY2CP25092 1073 aa6.16□□□□□ -1.42
VPS29-205ENST00000548539 POLR2BP30876 1174 aaKnown RBP6.16□□□□□ -1.42
VPS29-205ENST00000548539 GBP1P32455 592 aa6.16□□□□□ -1.42
VPS29-205ENST00000548539 CYP4F8P98187 520 aa6.16□□□□□ -1.42
VPS29-205ENST00000548539 ZYXQ15942 572 aaKnown RBP6.16□□□□□ -1.42
VPS29-205ENST00000548539 NFE2L2Q16236 605 aa6.16□□□□□ -1.42
VPS29-205ENST00000548539 DDR2Q16832 855 aa6.16□□□□□ -1.42
VPS29-205ENST00000548539 HSF5Q4G112 596 aaPredicted RBP6.16□□□□□ -1.42
VPS29-205ENST00000548539 NT5DC1Q5TFE4 455 aa6.16□□□□□ -1.42
VPS29-205ENST00000548539 NLRC3Q7RTR2 1065 aa6.16□□□□□ -1.42
VPS29-205ENST00000548539 FCRL2Q96LA5 508 aaPredicted RBP6.16□□□□□ -1.42
VPS29-205ENST00000548539 KIF2CQ99661 725 aa6.16□□□□□ -1.42
VPS29-205ENST00000548539 TM9SF2Q99805 663 aa6.16□□□□□ -1.42
VPS29-205ENST00000548539 SNTG2Q9NY99 539 aa6.16□□□□□ -1.42
VPS29-205ENST00000548539 ACRP10323 421 aa6.15□□□□□ -1.42
VPS29-205ENST00000548539 NME1P15531 152 aaKnown RBP6.15□□□□□ -1.42
VPS29-205ENST00000548539 PRKCAP17252 672 aa6.15□□□□□ -1.42
VPS29-205ENST00000548539 LIMS1P48059 325 aa6.15□□□□□ -1.42
VPS29-205ENST00000548539 RNF4P78317 190 aa6.15□□□□□ -1.42
VPS29-205ENST00000548539 CBX2Q14781 532 aaPredicted RBP6.15□□□□□ -1.42
VPS29-205ENST00000548539 BBS9Q3SYG4 887 aa6.15□□□□□ -1.42
VPS29-205ENST00000548539 DEPDC7Q96QD5 511 aa6.15□□□□□ -1.42
VPS29-205ENST00000548539 SLC9A7Q96T83 725 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms