RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 VGLL3A8MV65 326 aa9.77□□□□□ -0.85
TDP1-204ENST00000545686 B4DLN1 442 aa9.77□□□□□ -0.85
TDP1-204ENST00000545686 SMIM22K7EJ46 135 aa9.77□□□□□ -0.85
TDP1-204ENST00000545686 PES1O00541 588 aaKnown RBP9.77□□□□□ -0.85
TDP1-204ENST00000545686 UBA7P41226 1012 aa9.77□□□□□ -0.85
TDP1-204ENST00000545686 NOP2P46087 812 aaKnown RBP9.77□□□□□ -0.85
TDP1-204ENST00000545686 DYNLL1P63167 89 aaKnown RBP9.77□□□□□ -0.85
TDP1-204ENST00000545686 TTC31Q49AM3 519 aaPredicted RBP9.77□□□□□ -0.85
TDP1-204ENST00000545686 DNAJC21Q5F1R6 531 aaKnown RBP9.77□□□□□ -0.85
TDP1-204ENST00000545686 FOXR1Q6PIV2 292 aa9.77□□□□□ -0.85
TDP1-204ENST00000545686 P2RX5Q93086 422 aa9.77□□□□□ -0.85
TDP1-204ENST00000545686 DUSP9Q99956 384 aaKnown RBP9.77□□□□□ -0.85
TDP1-204ENST00000545686 CRNKL1Q9BZJ0 848 aaKnown RBP9.77□□□□□ -0.85
TDP1-204ENST00000545686 SNX12Q9UMY4 172 aa9.77□□□□□ -0.85
TDP1-204ENST00000545686 ZNF831Q5JPB2 1677 aa9.77□□□□□ -0.85
TDP1-204ENST00000545686 CCDC194A0A1B0GVG4 234 aa9.77□□□□□ -0.85
TDP1-204ENST00000545686 GOLGA6BA6NDN3 693 aa9.77□□□□□ -0.85
TDP1-204ENST00000545686 A6NNZ2 444 aa9.77□□□□□ -0.85
TDP1-204ENST00000545686 USP17L12C9JPN9 530 aa9.77□□□□□ -0.85
TDP1-204ENST00000545686 USP17L21D6R901 530 aa9.77□□□□□ -0.85
TDP1-204ENST00000545686 USO1O60763 962 aaKnown RBP9.77□□□□□ -0.85
TDP1-204ENST00000545686 SRGAP2O75044 1071 aa9.77□□□□□ -0.85
TDP1-204ENST00000545686 CLSTN1O94985 981 aa9.77□□□□□ -0.85
TDP1-204ENST00000545686 LCA5LO95447 670 aa9.77□□□□□ -0.85
TDP1-204ENST00000545686 TNFRSF8P28908 595 aa9.77□□□□□ -0.85
TDP1-204ENST00000545686 HOXA7P31268 230 aaPredicted RBP9.77□□□□□ -0.85
TDP1-204ENST00000545686 GGCXP38435 758 aa9.77□□□□□ -0.85
TDP1-204ENST00000545686 GNAQP50148 359 aa9.77□□□□□ -0.85
TDP1-204ENST00000545686 TBC1D8BQ0IIM8 1120 aa9.77□□□□□ -0.85
TDP1-204ENST00000545686 SPA17Q15506 151 aa9.77□□□□□ -0.85
TDP1-204ENST00000545686 TUBB8Q3ZCM7 444 aa9.77□□□□□ -0.85
TDP1-204ENST00000545686 CAVIN4Q5BKX8 364 aa9.77□□□□□ -0.85
TDP1-204ENST00000545686 RASSF8Q8NHQ8 419 aa9.77□□□□□ -0.85
TDP1-204ENST00000545686 IPO4Q8TEX9 1081 aaKnown RBP9.77□□□□□ -0.85
TDP1-204ENST00000545686 CAPZA3Q96KX2 299 aa9.77□□□□□ -0.85
TDP1-204ENST00000545686 CNOT6LQ96LI5 555 aaKnown RBP9.77□□□□□ -0.85
TDP1-204ENST00000545686 LACRTQ9GZZ8 138 aa9.77□□□□□ -0.85
TDP1-204ENST00000545686 RNF216Q9NWF9 866 aaPredicted RBP9.77□□□□□ -0.85
TDP1-204ENST00000545686 ABCB11O95342 1321 aa9.77□□□□□ -0.85
TDP1-204ENST00000545686 FAM205AQ6ZU69 1335 aa9.77□□□□□ -0.85
TDP1-204ENST00000545686 RCCD1A6NED2 376 aa9.76□□□□□ -0.85
TDP1-204ENST00000545686 GOLGA8KD6RF30 607 aa9.76□□□□□ -0.85
TDP1-204ENST00000545686 AGPSO00116 658 aa9.76□□□□□ -0.85
TDP1-204ENST00000545686 TACC1O75410 805 aa9.76□□□□□ -0.85
TDP1-204ENST00000545686 CAMTA2O94983 1202 aa9.76□□□□□ -0.85
TDP1-204ENST00000545686 CCDC178Q5BJE1 867 aa9.76□□□□□ -0.85
TDP1-204ENST00000545686 FKBP15Q5T1M5 1219 aa9.76□□□□□ -0.85
TDP1-204ENST00000545686 CCDC155Q8N6L0 562 aa9.76□□□□□ -0.85
TDP1-204ENST00000545686 ANKS1AQ92625 1134 aa9.76□□□□□ -0.85
TDP1-204ENST00000545686 AGPAT5Q9NUQ2 364 aa9.76□□□□□ -0.85
TDP1-204ENST00000545686 CCDC87Q9NVE4 849 aa9.76□□□□□ -0.85
TDP1-204ENST00000545686 FLT1P17948 1338 aa9.76□□□□□ -0.85
TDP1-204ENST00000545686 GOLGA6CA6NDK9 693 aa9.76□□□□□ -0.85
TDP1-204ENST00000545686 RASSF10A6NK89 507 aa9.76□□□□□ -0.85
TDP1-204ENST00000545686 PDE2AO00408 941 aaPredicted RBP9.76□□□□□ -0.85
TDP1-204ENST00000545686 GOLGA6DP0CG33 693 aa9.76□□□□□ -0.85
TDP1-204ENST00000545686 TCP1P17987 556 aaKnown RBP9.76□□□□□ -0.85
TDP1-204ENST00000545686 GYG1P46976 350 aa9.76□□□□□ -0.85
TDP1-204ENST00000545686 PPFIA1Q13136 1202 aa9.76□□□□□ -0.85
TDP1-204ENST00000545686 MIIPQ5JXC2 388 aa9.76□□□□□ -0.85
TDP1-204ENST00000545686 RCSD1Q6JBY9 416 aa9.76□□□□□ -0.85
TDP1-204ENST00000545686 CREG2Q8IUH2 290 aa9.76□□□□□ -0.85
TDP1-204ENST00000545686 ZNF384Q8TF68 577 aa9.76□□□□□ -0.85
TDP1-204ENST00000545686 SH3GL2Q99962 352 aa9.76□□□□□ -0.85
TDP1-204ENST00000545686 C7orf25Q9BPX7 421 aa9.76□□□□□ -0.85
TDP1-204ENST00000545686 SH2D4AQ9H788 454 aa9.76□□□□□ -0.85
TDP1-204ENST00000545686 DCP1AQ9NPI6 582 aaPredicted RBP9.76□□□□□ -0.85
TDP1-204ENST00000545686 JADE2Q9NQC1 790 aa9.76□□□□□ -0.85
TDP1-204ENST00000545686 GOLGA6AQ9NYA3 693 aa9.76□□□□□ -0.85
TDP1-204ENST00000545686 OPA1O60313 960 aa9.75□□□□□ -0.85
TDP1-204ENST00000545686 ADAMTS2O95450 1211 aa9.75□□□□□ -0.85
TDP1-204ENST00000545686 EPB41P11171 864 aaKnown RBP9.75□□□□□ -0.85
TDP1-204ENST00000545686 TRHP20396 242 aaPredicted RBP9.75□□□□□ -0.85
TDP1-204ENST00000545686 MTIF2P46199 727 aaKnown RBP9.75□□□□□ -0.85
TDP1-204ENST00000545686 ORC2Q13416 577 aaPredicted RBP9.75□□□□□ -0.85
TDP1-204ENST00000545686 GRM4Q14833 912 aa9.75□□□□□ -0.85
TDP1-204ENST00000545686 INTS5Q6P9B9 1019 aaKnown RBP9.75□□□□□ -0.85
TDP1-204ENST00000545686 EMBQ6PCB8 327 aa9.75□□□□□ -0.85
TDP1-204ENST00000545686 ARHGAP27Q6ZUM4 889 aa9.75□□□□□ -0.85
TDP1-204ENST00000545686 DGKHQ86XP1 1220 aa9.75□□□□□ -0.85
TDP1-204ENST00000545686 NSUN4Q96CB9 384 aaKnown RBP9.75□□□□□ -0.85
TDP1-204ENST00000545686 CCDC42Q96M95 316 aa9.75□□□□□ -0.85
TDP1-204ENST00000545686 NOC4LQ9BVI4 516 aaKnown RBP9.75□□□□□ -0.85
TDP1-204ENST00000545686 KAT14Q9H8E8 782 aa9.75□□□□□ -0.85
TDP1-204ENST00000545686 PLAGL2Q9UPG8 496 aa9.75□□□□□ -0.85
TDP1-204ENST00000545686 SBF2Q86WG5 1849 aa9.75□□□□□ -0.85
TDP1-204ENST00000545686 ROBO3Q96MS0 1386 aa9.75□□□□□ -0.85
TDP1-204ENST00000545686 MYH4Q9Y623 1939 aa9.75□□□□□ -0.85
TDP1-204ENST00000545686 TSPY2A6NKD2 308 aa9.75□□□□□ -0.85
TDP1-204ENST00000545686 ADAMTS3O15072 1205 aa9.75□□□□□ -0.85
TDP1-204ENST00000545686 NMT2O60551 498 aa9.75□□□□□ -0.85
TDP1-204ENST00000545686 MYBL2P10244 700 aa9.75□□□□□ -0.85
TDP1-204ENST00000545686 EPHB4P54760 987 aa9.75□□□□□ -0.85
TDP1-204ENST00000545686 AMPD3Q01432 767 aa9.75□□□□□ -0.85
TDP1-204ENST00000545686 C2orf54Q08AI8 447 aa9.75□□□□□ -0.85
TDP1-204ENST00000545686 NNTQ13423 1086 aa9.75□□□□□ -0.85
TDP1-204ENST00000545686 ALS2CLQ60I27 953 aa9.75□□□□□ -0.85
TDP1-204ENST00000545686 CNNM4Q6P4Q7 775 aa9.75□□□□□ -0.85
TDP1-204ENST00000545686 ANKRD18AQ8IVF6 992 aa9.75□□□□□ -0.85
TDP1-204ENST00000545686 ALS2CR12Q96Q35 445 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms