RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 TRPV6Q9H1D0 765 aa15.33■□□□□ 0.04
USP28-212ENST00000544750 ACAD9Q9H845 621 aa15.33■□□□□ 0.04
USP28-212ENST00000544750 EPB41L4AQ9HCS5 686 aaPredicted RBP15.33■□□□□ 0.04
USP28-212ENST00000544750 A1CFQ9NQ94 594 aaKnown RBP15.33■□□□□ 0.04
USP28-212ENST00000544750 PCDHA11Q9Y5I1 949 aa15.33■□□□□ 0.04
USP28-212ENST00000544750 PLIN4Q96Q06 1357 aa15.33■□□□□ 0.04
USP28-212ENST00000544750 BRWD1Q9NSI6 2320 aa15.33■□□□□ 0.04
USP28-212ENST00000544750 MYOGP15173 224 aa15.32■□□□□ 0.04
USP28-212ENST00000544750 SMPD1P17405 629 aa15.32■□□□□ 0.04
USP28-212ENST00000544750 TMEM63BQ5T3F8 832 aa15.32■□□□□ 0.04
USP28-212ENST00000544750 TAPT1Q6NXT6 567 aa15.32■□□□□ 0.04
USP28-212ENST00000544750 STK11IPQ8N1F8 1099 aa15.32■□□□□ 0.04
USP28-212ENST00000544750 OSBP2Q969R2 916 aa15.32■□□□□ 0.04
USP28-212ENST00000544750 HOMER2Q9NSB8 354 aa15.32■□□□□ 0.04
USP28-212ENST00000544750 Q9Y3F1 56 aa15.32■□□□□ 0.04
USP28-212ENST00000544750 CTDP1Q9Y5B0 961 aaPredicted RBP15.32■□□□□ 0.04
USP28-212ENST00000544750 ASB14A6NK59 587 aa15.31■□□□□ 0.04
USP28-212ENST00000544750 MINDY4BA8MYZ0 360 aa15.31■□□□□ 0.04
USP28-212ENST00000544750 PRDM1O75626 825 aa15.31■□□□□ 0.04
USP28-212ENST00000544750 TTLL1O95922 423 aa15.31■□□□□ 0.04
USP28-212ENST00000544750 BMP3P12645 472 aa15.31■□□□□ 0.04
USP28-212ENST00000544750 TFF2Q03403 129 aa15.31■□□□□ 0.04
USP28-212ENST00000544750 PPP2R2DQ66LE6 453 aa15.31■□□□□ 0.04
USP28-212ENST00000544750 LRRC47Q8N1G4 583 aaKnown RBP15.31■□□□□ 0.04
USP28-212ENST00000544750 BCL11AQ9H165 835 aa15.31■□□□□ 0.04
USP28-212ENST00000544750 PDGFCQ9NRA1 345 aa15.31■□□□□ 0.04
USP28-212ENST00000544750 SLC4A7Q9Y6M7 1214 aa15.31■□□□□ 0.04
USP28-212ENST00000544750 DDX49Q9Y6V7 483 aaKnown RBP15.31■□□□□ 0.04
USP28-212ENST00000544750 ERC2O15083 957 aa15.3■□□□□ 0.04
USP28-212ENST00000544750 DYNC1LI2O43237 492 aaPredicted RBP15.3■□□□□ 0.04
USP28-212ENST00000544750 SLFN13Q68D06 897 aa15.3■□□□□ 0.04
USP28-212ENST00000544750 IQSEC1Q6DN90 963 aa15.3■□□□□ 0.04
USP28-212ENST00000544750 RPUSD2Q8IZ73 545 aaKnown RBP15.3■□□□□ 0.04
USP28-212ENST00000544750 NEDD1Q8NHV4 660 aa15.3■□□□□ 0.04
USP28-212ENST00000544750 MORC4Q8TE76 937 aa15.3■□□□□ 0.04
USP28-212ENST00000544750 SCLYQ96I15 445 aa15.3■□□□□ 0.04
USP28-212ENST00000544750 TSPYL2Q9H2G4 693 aaPredicted RBP15.3■□□□□ 0.04
USP28-212ENST00000544750 RNF146Q9NTX7 359 aa15.3■□□□□ 0.04
USP28-212ENST00000544750 MTCH2Q9Y6C9 303 aa15.3■□□□□ 0.04
USP28-212ENST00000544750 COL4A4P53420 1690 aaPredicted RBP15.29■□□□□ 0.04
USP28-212ENST00000544750 TMEM232C9JQI7 657 aa15.29■□□□□ 0.04
USP28-212ENST00000544750 PLA2G6O60733 806 aa15.29■□□□□ 0.04
USP28-212ENST00000544750 HOXD11P31277 338 aaPredicted RBP15.29■□□□□ 0.04
USP28-212ENST00000544750 KCNQ1P51787 676 aa15.29■□□□□ 0.04
USP28-212ENST00000544750 PSMC6P62333 389 aa15.29■□□□□ 0.04
USP28-212ENST00000544750 TTLL4Q14679 1199 aa15.29■□□□□ 0.04
USP28-212ENST00000544750 TKFCQ3LXA3 575 aa15.29■□□□□ 0.04
USP28-212ENST00000544750 NOL8Q76FK4 1167 aaKnown RBP15.29■□□□□ 0.04
USP28-212ENST00000544750 ZNF444Q8N0Y2 327 aaPredicted RBP15.29■□□□□ 0.04
USP28-212ENST00000544750 KBTBD3Q8NAB2 608 aa15.29■□□□□ 0.04
USP28-212ENST00000544750 IL27Q8NEV9 243 aa15.29■□□□□ 0.04
USP28-212ENST00000544750 APPBP2Q92624 585 aa15.29■□□□□ 0.04
USP28-212ENST00000544750 FAM122AQ96E09 287 aa15.29■□□□□ 0.04
USP28-212ENST00000544750 C1QTNF1Q9BXJ1 281 aa15.29■□□□□ 0.04
USP28-212ENST00000544750 AP5M1Q9H0R1 490 aa15.29■□□□□ 0.04
USP28-212ENST00000544750 ALDH8A1Q9H2A2 487 aaPredicted RBP15.29■□□□□ 0.04
USP28-212ENST00000544750 DDX19BQ9UMR2 479 aa15.29■□□□□ 0.04
USP28-212ENST00000544750 COG6Q9Y2V7 657 aa15.29■□□□□ 0.04
USP28-212ENST00000544750 EPOPA6NHQ4 379 aa15.28■□□□□ 0.04
USP28-212ENST00000544750 RFXAPO00287 272 aa15.28■□□□□ 0.04
USP28-212ENST00000544750 GPAA1O43292 621 aa15.28■□□□□ 0.04
USP28-212ENST00000544750 ZEB2O60315 1214 aa15.28■□□□□ 0.04
USP28-212ENST00000544750 ATP2A2P16615 1042 aaKnown RBP15.28■□□□□ 0.04
USP28-212ENST00000544750 STAT2P52630 851 aa15.28■□□□□ 0.04
USP28-212ENST00000544750 FAM160B2Q86V87 743 aa15.28■□□□□ 0.04
USP28-212ENST00000544750 FBXO16Q8IX29 292 aaPredicted RBP15.28■□□□□ 0.04
USP28-212ENST00000544750 STAG1Q8WVM7 1258 aa15.28■□□□□ 0.04
USP28-212ENST00000544750 GMCL1Q96IK5 515 aa15.28■□□□□ 0.04
USP28-212ENST00000544750 TRERF1Q96PN7 1200 aa15.28■□□□□ 0.04
USP28-212ENST00000544750 M0R2C6 588 aa15.27■□□□□ 0.04
USP28-212ENST00000544750 SMARCA5O60264 1052 aaPredicted RBP15.27■□□□□ 0.04
USP28-212ENST00000544750 PFKMP08237 780 aa15.27■□□□□ 0.04
USP28-212ENST00000544750 MS4A1P11836 297 aa15.27■□□□□ 0.04
USP28-212ENST00000544750 AAK1Q2M2I8 961 aa15.27■□□□□ 0.04
USP28-212ENST00000544750 MUM1L1Q5H9M0 696 aa15.27■□□□□ 0.04
USP28-212ENST00000544750 MICALL1Q8N3F8 863 aa15.27■□□□□ 0.04
USP28-212ENST00000544750 CHURC1Q8WUH1 139 aa15.27■□□□□ 0.04
USP28-212ENST00000544750 LRRCC1Q9C099 1032 aa15.27■□□□□ 0.04
USP28-212ENST00000544750 ZNF287Q9HBT7 754 aa15.27■□□□□ 0.04
USP28-212ENST00000544750 VTA1Q9NP79 307 aa15.27■□□□□ 0.04
USP28-212ENST00000544750 CYP39A1Q9NYL5 469 aa15.27■□□□□ 0.04
USP28-212ENST00000544750 ARIH1Q9Y4X5 557 aaPredicted RBP15.27■□□□□ 0.04
USP28-212ENST00000544750 ZBBXA8MT70 800 aa15.26■□□□□ 0.03
USP28-212ENST00000544750 PATL2C9JE40 543 aaKnown RBP15.26■□□□□ 0.03
USP28-212ENST00000544750 RNF113AO15541 343 aaKnown RBP15.26■□□□□ 0.03
USP28-212ENST00000544750 ARHGEF15O94989 841 aa15.26■□□□□ 0.03
USP28-212ENST00000544750 CA3P07451 260 aa15.26■□□□□ 0.03
USP28-212ENST00000544750 CYP2C9P11712 490 aa15.26■□□□□ 0.03
USP28-212ENST00000544750 ALAS1P13196 640 aa15.26■□□□□ 0.03
USP28-212ENST00000544750 GNAT2P19087 354 aa15.26■□□□□ 0.03
USP28-212ENST00000544750 DUSP28Q4G0W2 176 aa15.26■□□□□ 0.03
USP28-212ENST00000544750 TMEM67Q5HYA8 995 aa15.26■□□□□ 0.03
USP28-212ENST00000544750 EEPD1Q7L9B9 569 aa15.26■□□□□ 0.03
USP28-212ENST00000544750 IFNL3Q8IZI9 196 aa15.26■□□□□ 0.03
USP28-212ENST00000544750 PURBQ96QR8 312 aaKnown RBP15.26■□□□□ 0.03
USP28-212ENST00000544750 EPHX3Q9H6B9 360 aa15.26■□□□□ 0.03
USP28-212ENST00000544750 ECHDC1Q9NTX5 307 aa15.26■□□□□ 0.03
USP28-212ENST00000544750 TRMT13Q9NUP7 481 aaKnown RBP15.26■□□□□ 0.03
USP28-212ENST00000544750 TNKSO95271 1327 aa15.25■□□□□ 0.03
USP28-212ENST00000544750 TLL1O43897 1013 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms