RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 TNFAIP2Q03169 654 aa15.43■□□□□ 0.06
RTN3-213ENST00000543552 PWP2Q15269 919 aaKnown RBP15.43■□□□□ 0.06
RTN3-213ENST00000543552 GNASQ5JWF2 1037 aa15.43■□□□□ 0.06
RTN3-213ENST00000543552 FAM109BQ6ICB4 259 aaPredicted RBP15.43■□□□□ 0.06
RTN3-213ENST00000543552 NSMFQ6X4W1 530 aa15.43■□□□□ 0.06
RTN3-213ENST00000543552 IQCA1Q86XH1 822 aa15.43■□□□□ 0.06
RTN3-213ENST00000543552 VTI1AQ96AJ9 217 aa15.43■□□□□ 0.06
RTN3-213ENST00000543552 MPHOSPH6Q99547 160 aaKnown RBP15.43■□□□□ 0.06
RTN3-213ENST00000543552 TMEM39AQ9NV64 488 aa15.43■□□□□ 0.06
RTN3-213ENST00000543552 MCM3APO60318 1980 aa15.42■□□□□ 0.06
RTN3-213ENST00000543552 A0A0U1RQG5 324 aaPredicted RBP15.42■□□□□ 0.06
RTN3-213ENST00000543552 TRIM43BA6NCK2 446 aa15.42■□□□□ 0.06
RTN3-213ENST00000543552 ASGR1P07306 291 aa15.42■□□□□ 0.06
RTN3-213ENST00000543552 PDHBP11177 359 aa15.42■□□□□ 0.06
RTN3-213ENST00000543552 GPATCH4Q5T3I0 446 aaKnown RBP15.42■□□□□ 0.06
RTN3-213ENST00000543552 CCSAPQ6IQ19 270 aaPredicted RBP15.42■□□□□ 0.06
RTN3-213ENST00000543552 CWC27Q6UX04 472 aaKnown RBP15.42■□□□□ 0.06
RTN3-213ENST00000543552 SH3RF1Q7Z6J0 888 aa15.42■□□□□ 0.06
RTN3-213ENST00000543552 EXOC6Q8TAG9 804 aa15.42■□□□□ 0.06
RTN3-213ENST00000543552 TRIM43Q96BQ3 446 aaPredicted RBP15.42■□□□□ 0.06
RTN3-213ENST00000543552 KATNBL1Q9H079 304 aa15.42■□□□□ 0.06
RTN3-213ENST00000543552 AP5M1Q9H0R1 490 aa15.42■□□□□ 0.06
RTN3-213ENST00000543552 VTA1Q9NP79 307 aa15.42■□□□□ 0.06
RTN3-213ENST00000543552 STXBP5LQ9Y2K9 1186 aa15.42■□□□□ 0.06
RTN3-213ENST00000543552 LAMA4Q16363 1823 aa15.41■□□□□ 0.06
RTN3-213ENST00000543552 SOWAHBA6NEL2 793 aa15.41■□□□□ 0.06
RTN3-213ENST00000543552 TLR3O15455 904 aaKnown RBP15.41■□□□□ 0.06
RTN3-213ENST00000543552 ZEB2O60315 1214 aa15.41■□□□□ 0.06
RTN3-213ENST00000543552 CABYRO75952 493 aa15.41■□□□□ 0.06
RTN3-213ENST00000543552 IGHDP01880 384 aa15.41■□□□□ 0.06
RTN3-213ENST00000543552 SLC16A2P36021 539 aa15.41■□□□□ 0.06
RTN3-213ENST00000543552 SNAP25P60880 206 aa15.41■□□□□ 0.06
RTN3-213ENST00000543552 NKX3-2P78367 333 aa15.41■□□□□ 0.06
RTN3-213ENST00000543552 FPGSQ05932 587 aa15.41■□□□□ 0.06
RTN3-213ENST00000543552 ZNF543Q08ER8 600 aa15.41■□□□□ 0.06
RTN3-213ENST00000543552 MUM1L1Q5H9M0 696 aa15.41■□□□□ 0.06
RTN3-213ENST00000543552 Q7L0L9 218 aa15.41■□□□□ 0.06
RTN3-213ENST00000543552 RASGRP2Q7LDG7 609 aa15.41■□□□□ 0.06
RTN3-213ENST00000543552 TLK2Q86UE8 772 aa15.41■□□□□ 0.06
RTN3-213ENST00000543552 TBC1D10CQ8IV04 446 aa15.41■□□□□ 0.06
RTN3-213ENST00000543552 SEZ6LQ9BYH1 1024 aa15.41■□□□□ 0.06
RTN3-213ENST00000543552 GPCPD1Q9NPB8 672 aa15.41■□□□□ 0.06
RTN3-213ENST00000543552 MTMR10Q9NXD2 777 aa15.41■□□□□ 0.06
RTN3-213ENST00000543552 CTNNA3Q9UI47 895 aa15.41■□□□□ 0.06
RTN3-213ENST00000543552 FRMPD2Q68DX3 1309 aaPredicted RBP15.41■□□□□ 0.06
RTN3-213ENST00000543552 WDR19Q8NEZ3 1342 aa15.41■□□□□ 0.06
RTN3-213ENST00000543552 MYADML2A6NDP7 307 aa15.4■□□□□ 0.06
RTN3-213ENST00000543552 ADCY6O43306 1168 aa15.4■□□□□ 0.06
RTN3-213ENST00000543552 FAAP100Q0VG06 881 aa15.4■□□□□ 0.06
RTN3-213ENST00000543552 SHHQ15465 462 aa15.4■□□□□ 0.06
RTN3-213ENST00000543552 IMMTQ16891 758 aaKnown RBP15.4■□□□□ 0.06
RTN3-213ENST00000543552 ZNF697Q5TEC3 545 aa15.4■□□□□ 0.06
RTN3-213ENST00000543552 IQSEC1Q6DN90 963 aa15.4■□□□□ 0.06
RTN3-213ENST00000543552 DGKHQ86XP1 1220 aa15.4■□□□□ 0.06
RTN3-213ENST00000543552 DSCC1Q9BVC3 393 aa15.4■□□□□ 0.06
RTN3-213ENST00000543552 Q9Y3F1 56 aa15.4■□□□□ 0.06
RTN3-213ENST00000543552 NEDD4P46934 1319 aa15.4■□□□□ 0.06
RTN3-213ENST00000543552 LRRC37A2A6NM11 1700 aa15.4■□□□□ 0.06
RTN3-213ENST00000543552 PTPDC1A2A3K4 754 aa15.39■□□□□ 0.05
RTN3-213ENST00000543552 B4DLN1 442 aa15.39■□□□□ 0.05
RTN3-213ENST00000543552 ARVCFO00192 962 aa15.39■□□□□ 0.05
RTN3-213ENST00000543552 SNHG28P0DPA3 235 aa15.39■□□□□ 0.05
RTN3-213ENST00000543552 MRPL12P52815 198 aaKnown RBP15.39■□□□□ 0.05
RTN3-213ENST00000543552 SMAD3P84022 425 aaKnown RBP15.39■□□□□ 0.05
RTN3-213ENST00000543552 FSCN1Q16658 493 aaKnown RBP15.39■□□□□ 0.05
RTN3-213ENST00000543552 TTBK2Q6IQ55 1244 aa15.39■□□□□ 0.05
RTN3-213ENST00000543552 SLC17A8Q8NDX2 589 aa15.39■□□□□ 0.05
RTN3-213ENST00000543552 RNPC3Q96LT9 517 aaKnown RBP15.39■□□□□ 0.05
RTN3-213ENST00000543552 CNNM2Q9H8M5 875 aa15.39■□□□□ 0.05
RTN3-213ENST00000543552 A0A0C4DFX4 3053 aa15.39■□□□□ 0.05
RTN3-213ENST00000543552 TIMP1P01033 207 aa15.38■□□□□ 0.05
RTN3-213ENST00000543552 BAATQ14032 418 aaPredicted RBP15.38■□□□□ 0.05
RTN3-213ENST00000543552 C9orf50Q5SZB4 431 aa15.38■□□□□ 0.05
RTN3-213ENST00000543552 FBXO16Q8IX29 292 aaPredicted RBP15.38■□□□□ 0.05
RTN3-213ENST00000543552 PNMA1Q8ND90 353 aa15.38■□□□□ 0.05
RTN3-213ENST00000543552 MORC4Q8TE76 937 aa15.38■□□□□ 0.05
RTN3-213ENST00000543552 KRT23Q9C075 422 aa15.38■□□□□ 0.05
RTN3-213ENST00000543552 MAF1Q9H063 256 aa15.38■□□□□ 0.05
RTN3-213ENST00000543552 KAT14Q9H8E8 782 aa15.38■□□□□ 0.05
RTN3-213ENST00000543552 TBX21Q9UL17 535 aa15.38■□□□□ 0.05
RTN3-213ENST00000543552 GNEQ9Y223 722 aaKnown RBP15.38■□□□□ 0.05
RTN3-213ENST00000543552 ASTN1O14525 1302 aa15.38■□□□□ 0.05
RTN3-213ENST00000543552 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.37■□□□□ 0.05
RTN3-213ENST00000543552 NFIBO00712 420 aa15.37■□□□□ 0.05
RTN3-213ENST00000543552 KDM4AO75164 1064 aa15.37■□□□□ 0.05
RTN3-213ENST00000543552 CDK7P50613 346 aa15.37■□□□□ 0.05
RTN3-213ENST00000543552 ALDH5A1P51649 535 aaPredicted RBP15.37■□□□□ 0.05
RTN3-213ENST00000543552 PPIGQ13427 754 aaKnown RBP eCLIP15.37■□□□□ 0.05
RTN3-213ENST00000543552 ASPRV1Q53RT3 343 aa15.37■□□□□ 0.05
RTN3-213ENST00000543552 RNF207Q6ZRF8 634 aa15.37■□□□□ 0.05
RTN3-213ENST00000543552 KIAA1211Q6ZU35 1233 aa15.37■□□□□ 0.05
RTN3-213ENST00000543552 UBAC1Q9BSL1 405 aa15.37■□□□□ 0.05
RTN3-213ENST00000543552 RAD50Q92878 1312 aa15.37■□□□□ 0.05
RTN3-213ENST00000543552 TMEM265A0A087WTH1 108 aa15.36■□□□□ 0.05
RTN3-213ENST00000543552 CTAGE5O15320 804 aa15.36■□□□□ 0.05
RTN3-213ENST00000543552 DYNC1LI2O43237 492 aaPredicted RBP15.36■□□□□ 0.05
RTN3-213ENST00000543552 SMPD1P17405 629 aa15.36■□□□□ 0.05
RTN3-213ENST00000543552 ITGB8P26012 769 aa15.36■□□□□ 0.05
RTN3-213ENST00000543552 CALML3P27482 149 aa15.36■□□□□ 0.05
RTN3-213ENST00000543552 BEX3Q00994 111 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms