RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 CD4P01730 458 aa18.37■□□□□ 0.53
CLSTN3-213ENST00000541953 SLC1A4P43007 532 aa18.37■□□□□ 0.53
CLSTN3-213ENST00000541953 NKX3-2P78367 333 aa18.37■□□□□ 0.53
CLSTN3-213ENST00000541953 PDE4BQ07343 736 aa18.37■□□□□ 0.53
CLSTN3-213ENST00000541953 EEPD1Q7L9B9 569 aa18.37■□□□□ 0.53
CLSTN3-213ENST00000541953 FBXO16Q8IX29 292 aaPredicted RBP18.37■□□□□ 0.53
CLSTN3-213ENST00000541953 PCSK9Q8NBP7 692 aaKnown RBP18.37■□□□□ 0.53
CLSTN3-213ENST00000541953 STAG1Q8WVM7 1258 aa18.37■□□□□ 0.53
CLSTN3-213ENST00000541953 VTI1AQ96AJ9 217 aa18.37■□□□□ 0.53
CLSTN3-213ENST00000541953 TRERF1Q96PN7 1200 aa18.37■□□□□ 0.53
CLSTN3-213ENST00000541953 PBX4Q9BYU1 374 aa18.37■□□□□ 0.53
CLSTN3-213ENST00000541953 ZNF576Q9H609 170 aa18.37■□□□□ 0.53
CLSTN3-213ENST00000541953 ZNF287Q9HBT7 754 aa18.37■□□□□ 0.53
CLSTN3-213ENST00000541953 CXXC1Q9P0U4 656 aaPredicted RBP18.37■□□□□ 0.53
CLSTN3-213ENST00000541953 PRR12Q9ULL5 1215 aa18.37■□□□□ 0.53
CLSTN3-213ENST00000541953 STX8Q9UNK0 236 aa18.37■□□□□ 0.53
CLSTN3-213ENST00000541953 TMEM265A0A087WTH1 108 aa18.36■□□□□ 0.53
CLSTN3-213ENST00000541953 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.36■□□□□ 0.53
CLSTN3-213ENST00000541953 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.36■□□□□ 0.53
CLSTN3-213ENST00000541953 SMPD1P17405 629 aa18.36■□□□□ 0.53
CLSTN3-213ENST00000541953 TNFAIP2Q03169 654 aa18.36■□□□□ 0.53
CLSTN3-213ENST00000541953 IKQ13123 557 aaPredicted RBP18.36■□□□□ 0.53
CLSTN3-213ENST00000541953 TTBK2Q6IQ55 1244 aa18.36■□□□□ 0.53
CLSTN3-213ENST00000541953 TAPT1Q6NXT6 567 aa18.36■□□□□ 0.53
CLSTN3-213ENST00000541953 ZNF365Q70YC5 407 aa18.36■□□□□ 0.53
CLSTN3-213ENST00000541953 TLK2Q86UE8 772 aa18.36■□□□□ 0.53
CLSTN3-213ENST00000541953 SLC43A3Q8NBI5 491 aa18.36■□□□□ 0.53
CLSTN3-213ENST00000541953 TIFAQ96CG3 184 aa18.36■□□□□ 0.53
CLSTN3-213ENST00000541953 VWCEQ96DN2 955 aa18.36■□□□□ 0.53
CLSTN3-213ENST00000541953 NACAP1Q9BZK3 213 aa18.36■□□□□ 0.53
CLSTN3-213ENST00000541953 MROH7Q68CQ1 1323 aa18.35■□□□□ 0.53
CLSTN3-213ENST00000541953 RBAK-RBAKDNI3L0D1 243 aa18.35■□□□□ 0.53
CLSTN3-213ENST00000541953 MX1P20591 662 aa18.35■□□□□ 0.53
CLSTN3-213ENST00000541953 PSMC6P62333 389 aa18.35■□□□□ 0.53
CLSTN3-213ENST00000541953 FAM160B2Q86V87 743 aa18.35■□□□□ 0.53
CLSTN3-213ENST00000541953 CYP39A1Q9NYL5 469 aa18.35■□□□□ 0.53
CLSTN3-213ENST00000541953 SLC16A2P36021 539 aa18.34■□□□□ 0.53
CLSTN3-213ENST00000541953 NOVP48745 357 aa18.34■□□□□ 0.53
CLSTN3-213ENST00000541953 PPIGQ13427 754 aaKnown RBP eCLIP18.34■□□□□ 0.533e-7■■□□□ 14.5
CLSTN3-213ENST00000541953 FSCN1Q16658 493 aaKnown RBP18.34■□□□□ 0.53
CLSTN3-213ENST00000541953 NOL8Q76FK4 1167 aaKnown RBP18.34■□□□□ 0.53
CLSTN3-213ENST00000541953 CHURC1Q8WUH1 139 aa18.34■□□□□ 0.53
CLSTN3-213ENST00000541953 TRPV6Q9H1D0 765 aa18.34■□□□□ 0.53
CLSTN3-213ENST00000541953 WNT8AQ9H1J5 351 aa18.34■□□□□ 0.53
CLSTN3-213ENST00000541953 SPC25Q9HBM1 224 aa18.34■□□□□ 0.53
CLSTN3-213ENST00000541953 TRANK1O15050 2925 aa18.34■□□□□ 0.53
CLSTN3-213ENST00000541953 TSPY2A6NKD2 308 aa18.33■□□□□ 0.52
CLSTN3-213ENST00000541953 ERC2O15083 957 aa18.33■□□□□ 0.52
CLSTN3-213ENST00000541953 PLA2G6O60733 806 aa18.33■□□□□ 0.52
CLSTN3-213ENST00000541953 RCSD1Q6JBY9 416 aa18.33■□□□□ 0.52
CLSTN3-213ENST00000541953 PPP1R13LQ8WUF5 828 aa18.33■□□□□ 0.52
CLSTN3-213ENST00000541953 SCN5AQ14524 2016 aa18.32■□□□□ 0.52
CLSTN3-213ENST00000541953 A0A0D9SFI3 127 aa18.32■□□□□ 0.52
CLSTN3-213ENST00000541953 NFIBO00712 420 aa18.32■□□□□ 0.52
CLSTN3-213ENST00000541953 DYNC1LI2O43237 492 aaPredicted RBP18.32■□□□□ 0.52
CLSTN3-213ENST00000541953 B4GALT4O60513 344 aa18.32■□□□□ 0.52
CLSTN3-213ENST00000541953 RANBP6O60518 1105 aaKnown RBP18.32■□□□□ 0.52
CLSTN3-213ENST00000541953 FDX1P10109 184 aa18.32■□□□□ 0.52
CLSTN3-213ENST00000541953 ADGRE1Q14246 886 aa18.32■□□□□ 0.52
CLSTN3-213ENST00000541953 NSMFQ6X4W1 530 aa18.32■□□□□ 0.52
CLSTN3-213ENST00000541953 FAM227BQ96M60 508 aa18.32■□□□□ 0.52
CLSTN3-213ENST00000541953 RANBP17Q9H2T7 1088 aaKnown RBP18.32■□□□□ 0.52
CLSTN3-213ENST00000541953 PRDM12Q9H4Q4 367 aa18.32■□□□□ 0.52
CLSTN3-213ENST00000541953 IL23AQ9NPF7 189 aa18.32■□□□□ 0.52
CLSTN3-213ENST00000541953 CCPG1Q9ULG6 757 aa18.32■□□□□ 0.52
CLSTN3-213ENST00000541953 YBX2Q9Y2T7 364 aaKnown RBP18.32■□□□□ 0.52
CLSTN3-213ENST00000541953 MYO9BQ13459 2157 aa18.31■□□□□ 0.52
CLSTN3-213ENST00000541953 FRMPD2Q68DX3 1309 aaPredicted RBP18.31■□□□□ 0.52
CLSTN3-213ENST00000541953 ASB14A6NK59 587 aa18.31■□□□□ 0.52
CLSTN3-213ENST00000541953 SLC3A2P08195 630 aaKnown RBP18.31■□□□□ 0.52
CLSTN3-213ENST00000541953 CCL23P55773 120 aa18.31■□□□□ 0.52
CLSTN3-213ENST00000541953 ITGA7Q13683 1181 aa18.31■□□□□ 0.52
CLSTN3-213ENST00000541953 CCDC96Q2M329 555 aa18.31■□□□□ 0.52
CLSTN3-213ENST00000541953 TKFCQ3LXA3 575 aa18.31■□□□□ 0.52
CLSTN3-213ENST00000541953 TMEM199Q8N511 208 aa18.31■□□□□ 0.52
CLSTN3-213ENST00000541953 NOC4LQ9BVI4 516 aaKnown RBP18.31■□□□□ 0.52
CLSTN3-213ENST00000541953 HIPK3Q9H422 1215 aa18.31■□□□□ 0.52
CLSTN3-213ENST00000541953 ANAPC4Q9UJX5 808 aa18.31■□□□□ 0.52
CLSTN3-213ENST00000541953 TLR3O15455 904 aaKnown RBP18.3■□□□□ 0.52
CLSTN3-213ENST00000541953 ICAM1P05362 532 aa18.3■□□□□ 0.52
CLSTN3-213ENST00000541953 FGRP09769 529 aa18.3■□□□□ 0.52
CLSTN3-213ENST00000541953 BAATQ14032 418 aaPredicted RBP18.3■□□□□ 0.52
CLSTN3-213ENST00000541953 LRRFIP1Q32MZ4 808 aaKnown RBP18.3■□□□□ 0.52
CLSTN3-213ENST00000541953 PSRC1Q6PGN9 363 aaPredicted RBP18.3■□□□□ 0.52
CLSTN3-213ENST00000541953 SLC30A10Q6XR72 485 aa18.3■□□□□ 0.52
CLSTN3-213ENST00000541953 ZNF589Q86UQ0 364 aaPredicted RBP18.3■□□□□ 0.52
CLSTN3-213ENST00000541953 MORC4Q8TE76 937 aa18.3■□□□□ 0.52
CLSTN3-213ENST00000541953 PPM1EQ8WY54 764 aa18.3■□□□□ 0.52
CLSTN3-213ENST00000541953 HERVK_113Q902F9 699 aa18.3■□□□□ 0.52
CLSTN3-213ENST00000541953 SCLYQ96I15 445 aa18.3■□□□□ 0.52
CLSTN3-213ENST00000541953 NKX2-4Q9H2Z4 354 aa18.3■□□□□ 0.52
CLSTN3-213ENST00000541953 ORC4O43929 436 aa18.29■□□□□ 0.52
CLSTN3-213ENST00000541953 OTOP2Q7RTS6 562 aa18.29■□□□□ 0.52
CLSTN3-213ENST00000541953 TMEM47Q9BQJ4 181 aa18.29■□□□□ 0.52
CLSTN3-213ENST00000541953 GPCPD1Q9NPB8 672 aa18.29■□□□□ 0.52
CLSTN3-213ENST00000541953 FGAP02671 866 aa18.28■□□□□ 0.52
CLSTN3-213ENST00000541953 MYOGP15173 224 aa18.28■□□□□ 0.52
CLSTN3-213ENST00000541953 ALDH5A1P51649 535 aaPredicted RBP18.28■□□□□ 0.52
CLSTN3-213ENST00000541953 RABGGTBP53611 331 aa18.28■□□□□ 0.52
CLSTN3-213ENST00000541953 HAND2P61296 217 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms