RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 ALX1Q15699 326 aa10.29□□□□□ -0.76
CLSTN3-212ENST00000541770 C12orf60Q5U649 245 aa10.29□□□□□ -0.76
CLSTN3-212ENST00000541770 PPP2R2DQ66LE6 453 aa10.29□□□□□ -0.76
CLSTN3-212ENST00000541770 CCSAPQ6IQ19 270 aaPredicted RBP10.29□□□□□ -0.76
CLSTN3-212ENST00000541770 CTR9Q6PD62 1173 aa10.29□□□□□ -0.76
CLSTN3-212ENST00000541770 FAM126BQ8IXS8 530 aa10.29□□□□□ -0.76
CLSTN3-212ENST00000541770 IFNL3Q8IZI9 196 aa10.29□□□□□ -0.76
CLSTN3-212ENST00000541770 MSL3Q8N5Y2 521 aaKnown RBP10.29□□□□□ -0.76
CLSTN3-212ENST00000541770 REPS2Q8NFH8 660 aa10.29□□□□□ -0.76
CLSTN3-212ENST00000541770 TEX13BQ9BXU2 312 aa10.29□□□□□ -0.76
CLSTN3-212ENST00000541770 ABHD16BQ9H3Z7 469 aa10.29□□□□□ -0.76
CLSTN3-212ENST00000541770 EPB41L4AQ9HCS5 686 aaPredicted RBP10.29□□□□□ -0.76
CLSTN3-212ENST00000541770 ISY1Q9ULR0 285 aaKnown RBP10.29□□□□□ -0.76
CLSTN3-212ENST00000541770 YBX2Q9Y2T7 364 aaKnown RBP10.29□□□□□ -0.76
CLSTN3-212ENST00000541770 ZMYM6O95789 1325 aa10.29□□□□□ -0.76
CLSTN3-212ENST00000541770 FOXP2O15409 715 aa10.28□□□□□ -0.76
CLSTN3-212ENST00000541770 SGSM2O43147 1006 aa10.28□□□□□ -0.76
CLSTN3-212ENST00000541770 ZBED4O75132 1171 aa10.28□□□□□ -0.76
CLSTN3-212ENST00000541770 APPP05067 770 aa10.28□□□□□ -0.76
CLSTN3-212ENST00000541770 HSPD1P10809 573 aaKnown RBP10.28□□□□□ -0.76
CLSTN3-212ENST00000541770 MYOGP15173 224 aa10.28□□□□□ -0.76
CLSTN3-212ENST00000541770 CST5P28325 142 aaPredicted RBP10.28□□□□□ -0.76
CLSTN3-212ENST00000541770 TFF2Q03403 129 aa10.28□□□□□ -0.76
CLSTN3-212ENST00000541770 RASIP1Q5U651 963 aa10.28□□□□□ -0.76
CLSTN3-212ENST00000541770 VPS53Q5VIR6 699 aa10.28□□□□□ -0.76
CLSTN3-212ENST00000541770 MAMDC4Q6UXC1 1216 aa10.28□□□□□ -0.76
CLSTN3-212ENST00000541770 C16orf86Q6ZW13 317 aa10.28□□□□□ -0.76
CLSTN3-212ENST00000541770 ARMCX2Q7L311 632 aa10.28□□□□□ -0.76
CLSTN3-212ENST00000541770 HERVK_113Q902F9 699 aa10.28□□□□□ -0.76
CLSTN3-212ENST00000541770 KIFC2Q96AC6 838 aa10.28□□□□□ -0.76
CLSTN3-212ENST00000541770 DSCC1Q9BVC3 393 aa10.28□□□□□ -0.76
CLSTN3-212ENST00000541770 HIPK3Q9H422 1215 aa10.28□□□□□ -0.76
CLSTN3-212ENST00000541770 RAVER2Q9HCJ3 691 aaKnown RBP10.28□□□□□ -0.76
CLSTN3-212ENST00000541770 UMODL1Q5DID0 1318 aa10.28□□□□□ -0.76
CLSTN3-212ENST00000541770 CDC45O75419 566 aa10.27□□□□□ -0.77
CLSTN3-212ENST00000541770 TDO2P48775 406 aa10.27□□□□□ -0.77
CLSTN3-212ENST00000541770 KCNQ1P51787 676 aa10.27□□□□□ -0.77
CLSTN3-212ENST00000541770 GJA9P57773 515 aa10.27□□□□□ -0.77
CLSTN3-212ENST00000541770 CASC1Q6TDU7 716 aa10.27□□□□□ -0.77
CLSTN3-212ENST00000541770 CXCL17Q6UXB2 119 aa10.27□□□□□ -0.77
CLSTN3-212ENST00000541770 PPP4R3CPQ6ZMV5 832 aa10.27□□□□□ -0.77
CLSTN3-212ENST00000541770 PRPF38AQ8NAV1 312 aaKnown RBP10.27□□□□□ -0.77
CLSTN3-212ENST00000541770 C1QTNF1Q9BXJ1 281 aa10.27□□□□□ -0.77
CLSTN3-212ENST00000541770 NAPBQ9H115 298 aa10.27□□□□□ -0.77
CLSTN3-212ENST00000541770 UPF3AQ9H1J1 476 aaKnown RBP10.27□□□□□ -0.77
CLSTN3-212ENST00000541770 IL25Q9H293 177 aa10.27□□□□□ -0.77
CLSTN3-212ENST00000541770 CERS4Q9HA82 394 aa10.27□□□□□ -0.77
CLSTN3-212ENST00000541770 HOMER2Q9NSB8 354 aa10.27□□□□□ -0.77
CLSTN3-212ENST00000541770 SLC4A7Q9Y6M7 1214 aa10.27□□□□□ -0.77
CLSTN3-212ENST00000541770 GREB1LQ9C091 1923 aaPredicted RBP10.27□□□□□ -0.77
CLSTN3-212ENST00000541770 DNAJC25-GNG10A0A024R161 153 aa10.26□□□□□ -0.77
CLSTN3-212ENST00000541770 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.26□□□□□ -0.77
CLSTN3-212ENST00000541770 MINDY4BA8MYZ0 360 aa10.26□□□□□ -0.77
CLSTN3-212ENST00000541770 F5H6K3 240 aa10.26□□□□□ -0.77
CLSTN3-212ENST00000541770 RFXAPO00287 272 aa10.26□□□□□ -0.77
CLSTN3-212ENST00000541770 CD4P01730 458 aa10.26□□□□□ -0.77
CLSTN3-212ENST00000541770 FGAP02671 866 aa10.26□□□□□ -0.77
CLSTN3-212ENST00000541770 TNFAIP2Q03169 654 aa10.26□□□□□ -0.77
CLSTN3-212ENST00000541770 KLRC3Q07444 240 aa10.26□□□□□ -0.77
CLSTN3-212ENST00000541770 ITGA7Q13683 1181 aa10.26□□□□□ -0.77
CLSTN3-212ENST00000541770 AAK1Q2M2I8 961 aa10.26□□□□□ -0.77
CLSTN3-212ENST00000541770 ZNF467Q7Z7K2 595 aaPredicted RBP10.26□□□□□ -0.77
CLSTN3-212ENST00000541770 CCDC144CPQ8IYA2 1237 aa10.26□□□□□ -0.77
CLSTN3-212ENST00000541770 CHMP4CQ96CF2 233 aa10.26□□□□□ -0.77
CLSTN3-212ENST00000541770 SCLYQ96I15 445 aa10.26□□□□□ -0.77
CLSTN3-212ENST00000541770 ESYT1Q9BSJ8 1104 aa10.26□□□□□ -0.77
CLSTN3-212ENST00000541770 MKNK2Q9HBH9 465 aa10.26□□□□□ -0.77
CLSTN3-212ENST00000541770 CLIP2Q9UDT6 1046 aa10.26□□□□□ -0.77
CLSTN3-212ENST00000541770 LRRC37A2A6NM11 1700 aa10.26□□□□□ -0.77
CLSTN3-212ENST00000541770 SCN5AQ14524 2016 aa10.26□□□□□ -0.77
CLSTN3-212ENST00000541770 GTPBP6O43824 516 aaPredicted RBP10.25□□□□□ -0.77
CLSTN3-212ENST00000541770 NDUFB10O96000 172 aa10.25□□□□□ -0.77
CLSTN3-212ENST00000541770 BMP1P13497 986 aa10.25□□□□□ -0.77
CLSTN3-212ENST00000541770 TLK2Q86UE8 772 aa10.25□□□□□ -0.77
CLSTN3-212ENST00000541770 RPUSD2Q8IZ73 545 aaKnown RBP10.25□□□□□ -0.77
CLSTN3-212ENST00000541770 AP5M1Q9H0R1 490 aa10.25□□□□□ -0.77
CLSTN3-212ENST00000541770 TRPV6Q9H1D0 765 aa10.25□□□□□ -0.77
CLSTN3-212ENST00000541770 EPHX3Q9H6B9 360 aa10.25□□□□□ -0.77
CLSTN3-212ENST00000541770 ZNF287Q9HBT7 754 aa10.25□□□□□ -0.77
CLSTN3-212ENST00000541770 FBXO40Q9UH90 709 aa10.25□□□□□ -0.77
CLSTN3-212ENST00000541770 CTNNA3Q9UI47 895 aa10.25□□□□□ -0.77
CLSTN3-212ENST00000541770 ANAPC4Q9UJX5 808 aa10.25□□□□□ -0.77
CLSTN3-212ENST00000541770 HCN4Q9Y3Q4 1203 aa10.25□□□□□ -0.77
CLSTN3-212ENST00000541770 CTAGE5O15320 804 aa10.24□□□□□ -0.77
CLSTN3-212ENST00000541770 DYNC1LI2O43237 492 aaPredicted RBP10.24□□□□□ -0.77
CLSTN3-212ENST00000541770 ZEB2O60315 1214 aa10.24□□□□□ -0.77
CLSTN3-212ENST00000541770 B4GALT4O60513 344 aa10.24□□□□□ -0.77
CLSTN3-212ENST00000541770 SLC3A2P08195 630 aaKnown RBP10.24□□□□□ -0.77
CLSTN3-212ENST00000541770 ATP2A2P16615 1042 aaKnown RBP10.24□□□□□ -0.77
CLSTN3-212ENST00000541770 PTGS1P23219 599 aa10.24□□□□□ -0.77
CLSTN3-212ENST00000541770 PSMC6P62333 389 aa10.24□□□□□ -0.77
CLSTN3-212ENST00000541770 CNTN2Q02246 1040 aa10.24□□□□□ -0.77
CLSTN3-212ENST00000541770 PPARAQ07869 468 aa10.24□□□□□ -0.77
CLSTN3-212ENST00000541770 FSCN1Q16658 493 aaKnown RBP10.24□□□□□ -0.77
CLSTN3-212ENST00000541770 EEPD1Q7L9B9 569 aa10.24□□□□□ -0.77
CLSTN3-212ENST00000541770 DEFB128Q7Z7B8 93 aa10.24□□□□□ -0.77
CLSTN3-212ENST00000541770 LRRC47Q8N1G4 583 aaKnown RBP10.24□□□□□ -0.77
CLSTN3-212ENST00000541770 CHST13Q8NET6 341 aa10.24□□□□□ -0.77
CLSTN3-212ENST00000541770 FGD4Q96M96 766 aa10.24□□□□□ -0.77
CLSTN3-212ENST00000541770 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms