RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 NARFQ9UHQ1 456 aa15.18■□□□□ 0.02
PTPN1-202ENST00000541713 PCDHAC2Q9Y5I4 1007 aa15.18■□□□□ 0.02
PTPN1-202ENST00000541713 MYH14Q7Z406 1995 aaKnown RBP15.18■□□□□ 0.02
PTPN1-202ENST00000541713 MYO1BO43795 1136 aa15.18■□□□□ 0.02
PTPN1-202ENST00000541713 ATP1A1P05023 1023 aaKnown RBP15.18■□□□□ 0.02
PTPN1-202ENST00000541713 CYP26C1Q6V0L0 522 aa15.18■□□□□ 0.02
PTPN1-202ENST00000541713 SPATA20Q8TB22 786 aa15.18■□□□□ 0.02
PTPN1-202ENST00000541713 NAPGQ99747 312 aaPredicted RBP15.18■□□□□ 0.02
PTPN1-202ENST00000541713 CLEC4GQ6UXB4 293 aa15.17■□□□□ 0.02
PTPN1-202ENST00000541713 C2CD5Q86YS7 1000 aa15.17■□□□□ 0.02
PTPN1-202ENST00000541713 CNOT6LQ96LI5 555 aaKnown RBP15.17■□□□□ 0.02
PTPN1-202ENST00000541713 RCCD1A6NED2 376 aa15.17■□□□□ 0.02
PTPN1-202ENST00000541713 H3BQF6 201 aa15.17■□□□□ 0.02
PTPN1-202ENST00000541713 NDUFA10O95299 355 aa15.17■□□□□ 0.02
PTPN1-202ENST00000541713 PROCA1Q8NCQ7 364 aaPredicted RBP15.17■□□□□ 0.02
PTPN1-202ENST00000541713 PANX2Q96RD6 677 aa15.17■□□□□ 0.02
PTPN1-202ENST00000541713 NYXQ9GZU5 481 aa15.17■□□□□ 0.02
PTPN1-202ENST00000541713 RWDD2AQ9UIY3 292 aa15.17■□□□□ 0.02
PTPN1-202ENST00000541713 CDC23Q9UJX2 597 aa15.17■□□□□ 0.02
PTPN1-202ENST00000541713 SPEF2Q9C093 1822 aa15.16■□□□□ 0.02
PTPN1-202ENST00000541713 BUB1O43683 1085 aa15.16■□□□□ 0.02
PTPN1-202ENST00000541713 PDE4CQ08493 712 aa15.16■□□□□ 0.02
PTPN1-202ENST00000541713 TDRD12Q587J7 1177 aaKnown RBP15.16■□□□□ 0.02
PTPN1-202ENST00000541713 MEX3CQ5U5Q3 659 aaKnown RBP15.16■□□□□ 0.02
PTPN1-202ENST00000541713 SRGAP1Q7Z6B7 1085 aa15.16■□□□□ 0.02
PTPN1-202ENST00000541713 RRP36Q96EU6 259 aaKnown RBP15.16■□□□□ 0.02
PTPN1-202ENST00000541713 LRWD1Q9UFC0 647 aa15.16■□□□□ 0.02
PTPN1-202ENST00000541713 C4AP0C0L4 1744 aa15.16■□□□□ 0.02
PTPN1-202ENST00000541713 C4BP0C0L5 1744 aa15.16■□□□□ 0.02
PTPN1-202ENST00000541713 MYH7P12883 1935 aa15.16■□□□□ 0.02
PTPN1-202ENST00000541713 NPHP3-ACAD11A0A0J9YXS1 232 aa15.16■□□□□ 0.02
PTPN1-202ENST00000541713 GOLGA6L9A6NEM1 432 aa15.16■□□□□ 0.02
PTPN1-202ENST00000541713 STXBP3O00186 592 aa15.16■□□□□ 0.02
PTPN1-202ENST00000541713 ORC4O43929 436 aa15.16■□□□□ 0.02
PTPN1-202ENST00000541713 BMP15O95972 392 aa15.16■□□□□ 0.02
PTPN1-202ENST00000541713 NONOQ15233 471 aaKnown RBP eCLIP15.16■□□□□ 0.02
PTPN1-202ENST00000541713 SPTY2D1Q68D10 685 aaPredicted RBP15.16■□□□□ 0.02
PTPN1-202ENST00000541713 MSL1Q68DK7 614 aa15.16■□□□□ 0.02
PTPN1-202ENST00000541713 GPR161Q8N6U8 529 aaKnown RBP15.16■□□□□ 0.02
PTPN1-202ENST00000541713 MB21D1Q8N884 522 aa15.16■□□□□ 0.02
PTPN1-202ENST00000541713 OR8K1Q8NGG5 319 aa15.16■□□□□ 0.02
PTPN1-202ENST00000541713 SPATA31A5Q5VU36 1347 aa15.16■□□□□ 0.02
PTPN1-202ENST00000541713 SPATA31A7Q8IWB4 1347 aa15.16■□□□□ 0.02
PTPN1-202ENST00000541713 UBAP1LF5GYI3 381 aa15.16■□□□□ 0.02
PTPN1-202ENST00000541713 SLC7A5Q01650 507 aa15.16■□□□□ 0.02
PTPN1-202ENST00000541713 ZNF804AQ7Z570 1209 aa15.16■□□□□ 0.02
PTPN1-202ENST00000541713 MLXIPQ9HAP2 919 aa15.16■□□□□ 0.02
PTPN1-202ENST00000541713 ZNHIT6Q9NWK9 470 aaKnown RBP15.16■□□□□ 0.02
PTPN1-202ENST00000541713 MYH15Q9Y2K3 1946 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 USP17L15C9J2P7 530 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 USP17L13C9JLJ4 530 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 USP17L11C9JVI0 530 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 USP17L18D6R9N7 530 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 USP17L22D6RA61 530 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 USP17L17D6RBQ6 530 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 USP17L19D6RCP7 530 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 USP17L20D6RJB6 530 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 OR52Z1P0C646 297 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 USP17L24Q0WX57 530 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 UTP14CQ5TAP6 766 aaKnown RBP15.15■□□□□ 0.02
PTPN1-202ENST00000541713 USP17L6PQ6QN14 398 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 TMTC1Q8IUR5 882 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 MMS19Q96T76 1030 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 CD209Q9NNX6 404 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.15■□□□□ 0.028e-7■■■■■ 167
PTPN1-202ENST00000541713 SCAF8Q9UPN6 1271 aaKnown RBP15.15■□□□□ 0.02
PTPN1-202ENST00000541713 EPHB6O15197 1021 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 NCK2O43639 380 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 SLC37A4O43826 429 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 RPS6KA4O75676 772 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 GABPB1Q06547 395 aaPredicted RBP15.15■□□□□ 0.02
PTPN1-202ENST00000541713 TTC19Q6DKK2 380 aaPredicted RBP15.15■□□□□ 0.02
PTPN1-202ENST00000541713 SNX29Q8TEQ0 813 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 KCNQ5Q9NR82 932 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 RMND1Q9NWS8 449 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 MYO6Q9UM54 1294 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 MEIS1O00470 390 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 AKR1B1P15121 316 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 TM4SF1P30408 202 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 LONP1P36776 959 aaKnown RBP15.15■□□□□ 0.02
PTPN1-202ENST00000541713 HNRNPH2P55795 449 aaKnown RBP15.15■□□□□ 0.02
PTPN1-202ENST00000541713 C2orf54Q08AI8 447 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 PPP2R5BQ15173 497 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 USH1GQ495M9 461 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 RRAGAQ7L523 313 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 ADSSL1Q8N142 457 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 REXO1Q8N1G1 1221 aaKnown RBP15.15■□□□□ 0.02
PTPN1-202ENST00000541713 C4orf32Q8N8J7 132 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 WDR66Q8TBY9 1149 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 ANKZF1Q9H8Y5 726 aa15.15■□□□□ 0.02
PTPN1-202ENST00000541713 REXO2Q9Y3B8 237 aaKnown RBP15.15■□□□□ 0.02
PTPN1-202ENST00000541713 AKR1B10O60218 316 aa15.14■□□□□ 0.01
PTPN1-202ENST00000541713 KRT18P05783 430 aaKnown RBP15.14■□□□□ 0.01
PTPN1-202ENST00000541713 ZNF622Q969S3 477 aaKnown RBP eCLIP15.14■□□□□ 0.011e-6■□□□□ 11
PTPN1-202ENST00000541713 JAKMIP2Q96AA8 810 aa15.14■□□□□ 0.01
PTPN1-202ENST00000541713 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.14■□□□□ 0.01
PTPN1-202ENST00000541713 C6orf50Q9HD87 102 aa15.14■□□□□ 0.01
PTPN1-202ENST00000541713 BCS1LQ9Y276 419 aa15.14■□□□□ 0.01
PTPN1-202ENST00000541713 ITGB4P16144 1822 aa15.14■□□□□ 0.01
PTPN1-202ENST00000541713 CCDC42Q96M95 316 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms