RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 USP17L11C9JVI0 530 aa20.24■□□□□ 0.83
CLIP1-215ENST00000541108 USP17L18D6R9N7 530 aa20.24■□□□□ 0.83
CLIP1-215ENST00000541108 USP17L22D6RA61 530 aa20.24■□□□□ 0.83
CLIP1-215ENST00000541108 USP17L17D6RBQ6 530 aa20.24■□□□□ 0.83
CLIP1-215ENST00000541108 USP17L19D6RCP7 530 aa20.24■□□□□ 0.83
CLIP1-215ENST00000541108 USP17L20D6RJB6 530 aa20.24■□□□□ 0.83
CLIP1-215ENST00000541108 USP17L24Q0WX57 530 aa20.24■□□□□ 0.83
CLIP1-215ENST00000541108 HOXC10Q9NYD6 342 aa20.24■□□□□ 0.83
CLIP1-215ENST00000541108 ADAMTS5Q9UNA0 930 aa20.24■□□□□ 0.83
CLIP1-215ENST00000541108 MRPL11Q9Y3B7 192 aaKnown RBP20.24■□□□□ 0.83
CLIP1-215ENST00000541108 ABCB11O95342 1321 aa20.24■□□□□ 0.83
CLIP1-215ENST00000541108 PTPRFP10586 1907 aa20.24■□□□□ 0.83
CLIP1-215ENST00000541108 A0A0G2JLL6 359 aaPredicted RBP20.23■□□□□ 0.83
CLIP1-215ENST00000541108 PIK3CDO00329 1044 aa20.23■□□□□ 0.83
CLIP1-215ENST00000541108 ATP2B1P20020 1258 aa20.23■□□□□ 0.83
CLIP1-215ENST00000541108 AP3B2Q13367 1082 aa20.23■□□□□ 0.83
CLIP1-215ENST00000541108 ORC2Q13416 577 aaPredicted RBP20.23■□□□□ 0.83
CLIP1-215ENST00000541108 INF2Q27J81 1249 aa20.23■□□□□ 0.83
CLIP1-215ENST00000541108 CCDC174Q6PII3 467 aa20.23■□□□□ 0.83
CLIP1-215ENST00000541108 PRRT2Q7Z6L0 340 aaPredicted RBP20.23■□□□□ 0.83
CLIP1-215ENST00000541108 SYAP1Q96A49 352 aaPredicted RBP20.23■□□□□ 0.83
CLIP1-215ENST00000541108 OTUD5Q96G74 571 aa20.23■□□□□ 0.83
CLIP1-215ENST00000541108 PARP14Q460N5 1801 aa20.23■□□□□ 0.83
CLIP1-215ENST00000541108 MEIS2O14770 477 aa20.22■□□□□ 0.83
CLIP1-215ENST00000541108 ZBED4O75132 1171 aa20.22■□□□□ 0.83
CLIP1-215ENST00000541108 DSG3P32926 999 aa20.22■□□□□ 0.83
CLIP1-215ENST00000541108 AXDND1Q5T1B0 1012 aaPredicted RBP20.22■□□□□ 0.83
CLIP1-215ENST00000541108 JAKMIP3Q5VZ66 844 aa20.22■□□□□ 0.83
CLIP1-215ENST00000541108 NEK8Q86SG6 692 aa20.22■□□□□ 0.83
CLIP1-215ENST00000541108 CNKSR2Q8WXI2 1034 aa20.22■□□□□ 0.83
CLIP1-215ENST00000541108 SLC10A4Q96EP9 437 aa20.22■□□□□ 0.83
CLIP1-215ENST00000541108 ZNF536O15090 1300 aa20.22■□□□□ 0.83
CLIP1-215ENST00000541108 VWA5AO00534 786 aa20.22■□□□□ 0.83
CLIP1-215ENST00000541108 FOSP01100 380 aaPredicted RBP20.22■□□□□ 0.83
CLIP1-215ENST00000541108 PTPREP23469 700 aa20.22■□□□□ 0.83
CLIP1-215ENST00000541108 MARCKSP29966 332 aaPredicted RBP20.22■□□□□ 0.83
CLIP1-215ENST00000541108 HOXA7P31268 230 aaPredicted RBP20.22■□□□□ 0.83
CLIP1-215ENST00000541108 OAZ1P54368 228 aa20.22■□□□□ 0.83
CLIP1-215ENST00000541108 C2orf69Q8N8R5 385 aa20.22■□□□□ 0.83
CLIP1-215ENST00000541108 KRI1Q8N9T8 703 aaKnown RBP20.22■□□□□ 0.83
CLIP1-215ENST00000541108 TBCKQ8TEA7 893 aa20.22■□□□□ 0.83
CLIP1-215ENST00000541108 OPTNQ96CV9 577 aa20.22■□□□□ 0.83
CLIP1-215ENST00000541108 ZNF408Q9H9D4 720 aa20.22■□□□□ 0.83
CLIP1-215ENST00000541108 GBA2Q9HCG7 927 aaPredicted RBP20.22■□□□□ 0.83
CLIP1-215ENST00000541108 RLFQ13129 1914 aa20.21■□□□□ 0.83
CLIP1-215ENST00000541108 OPLAHO14841 1288 aa20.21■□□□□ 0.83
CLIP1-215ENST00000541108 CUTAO60888 179 aa20.21■□□□□ 0.83
CLIP1-215ENST00000541108 ITGBL1O95965 494 aaPredicted RBP20.21■□□□□ 0.83
CLIP1-215ENST00000541108 ATP2C1P98194 919 aaPredicted RBP20.21■□□□□ 0.83
CLIP1-215ENST00000541108 ZNF174Q15697 407 aa20.21■□□□□ 0.83
CLIP1-215ENST00000541108 CHADLQ6NUI6 762 aa20.21■□□□□ 0.83
CLIP1-215ENST00000541108 CAVIN1Q6NZI2 390 aaKnown RBP20.21■□□□□ 0.83
CLIP1-215ENST00000541108 ZNF579Q8NAF0 562 aaKnown RBP20.21■□□□□ 0.83
CLIP1-215ENST00000541108 ZNF526Q8TF50 670 aaPredicted RBP20.21■□□□□ 0.83
CLIP1-215ENST00000541108 TMEM260Q9NX78 707 aa20.21■□□□□ 0.83
CLIP1-215ENST00000541108 CTDP1Q9Y5B0 961 aaPredicted RBP20.21■□□□□ 0.83
CLIP1-215ENST00000541108 SRPRBQ9Y5M8 271 aaKnown RBP20.21■□□□□ 0.83
CLIP1-215ENST00000541108 LAD1O00515 517 aa20.2■□□□□ 0.82
CLIP1-215ENST00000541108 WNT7AO00755 349 aa20.2■□□□□ 0.82
CLIP1-215ENST00000541108 CMA1P23946 247 aa20.2■□□□□ 0.82
CLIP1-215ENST00000541108 UBE2SQ16763 222 aa20.2■□□□□ 0.82
CLIP1-215ENST00000541108 ARL6IP4Q66PJ3 421 aaKnown RBP20.2■□□□□ 0.82
CLIP1-215ENST00000541108 USP17L6PQ6QN14 398 aa20.2■□□□□ 0.82
CLIP1-215ENST00000541108 SAMD1Q6SPF0 538 aaPredicted RBP20.2■□□□□ 0.82
CLIP1-215ENST00000541108 FASTKD5Q7L8L6 764 aaKnown RBP20.2■□□□□ 0.82
CLIP1-215ENST00000541108 SAMD3Q8N6K7 520 aa20.2■□□□□ 0.82
CLIP1-215ENST00000541108 FERMT2Q96AC1 680 aa20.2■□□□□ 0.82
CLIP1-215ENST00000541108 CCPG1Q9ULG6 757 aa20.2■□□□□ 0.82
CLIP1-215ENST00000541108 ATP2A1O14983 1001 aa20.19■□□□□ 0.82
CLIP1-215ENST00000541108 FMR1Q06787 632 aaKnown RBP eCLIP20.19■□□□□ 0.824e-6■■■■□ 21.6
CLIP1-215ENST00000541108 PTGDRQ13258 359 aa20.19■□□□□ 0.82
CLIP1-215ENST00000541108 CCAR1Q8IX12 1150 aaKnown RBP20.19■□□□□ 0.82
CLIP1-215ENST00000541108 ATG4CQ96DT6 458 aa20.19■□□□□ 0.82
CLIP1-215ENST00000541108 MAP3K20Q9NYL2 800 aaKnown RBP20.19■□□□□ 0.82
CLIP1-215ENST00000541108 FBXO2Q9UK22 296 aaPredicted RBP20.19■□□□□ 0.82
CLIP1-215ENST00000541108 LOC285556D6RIA3 1793 aa20.19■□□□□ 0.82
CLIP1-215ENST00000541108 SMCHD1A6NHR9 2005 aa20.19■□□□□ 0.82
CLIP1-215ENST00000541108 CELF2O95319 508 aaKnown RBP20.19■□□□□ 0.82
CLIP1-215ENST00000541108 MCM7P33993 719 aa20.19■□□□□ 0.82
CLIP1-215ENST00000541108 MRPS27Q92552 414 aaKnown RBP20.19■□□□□ 0.82
CLIP1-215ENST00000541108 AGBL1Q96MI9 1066 aa20.19■□□□□ 0.82
CLIP1-215ENST00000541108 NAP1L4Q99733 375 aaKnown RBP20.19■□□□□ 0.82
CLIP1-215ENST00000541108 TMEM63CQ9P1W3 806 aa20.19■□□□□ 0.82
CLIP1-215ENST00000541108 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.19■□□□□ 0.82
CLIP1-215ENST00000541108 SPDYE3A6NKU9 549 aa20.18■□□□□ 0.82
CLIP1-215ENST00000541108 USP11P51784 963 aa20.18■□□□□ 0.82
CLIP1-215ENST00000541108 GHRHRQ02643 423 aa20.18■□□□□ 0.82
CLIP1-215ENST00000541108 LETM2Q2VYF4 491 aa20.18■□□□□ 0.82
CLIP1-215ENST00000541108 PPP4R3AQ6IN85 833 aa20.18■□□□□ 0.82
CLIP1-215ENST00000541108 MCF2L2Q86YR7 1114 aa20.18■□□□□ 0.82
CLIP1-215ENST00000541108 CPXCR1Q8N123 301 aa20.18■□□□□ 0.82
CLIP1-215ENST00000541108 C4orf32Q8N8J7 132 aa20.18■□□□□ 0.82
CLIP1-215ENST00000541108 REPS2Q8NFH8 660 aa20.18■□□□□ 0.82
CLIP1-215ENST00000541108 GCOM1H8Y6P7 765 aaPredicted RBP20.17■□□□□ 0.82
CLIP1-215ENST00000541108 POLR2MP0CAP2 368 aa20.17■□□□□ 0.82
CLIP1-215ENST00000541108 LIG1P18858 919 aa20.17■□□□□ 0.82
CLIP1-215ENST00000541108 SNAPC2Q13487 334 aa20.17■□□□□ 0.82
CLIP1-215ENST00000541108 TPRNQ4KMQ1 711 aa20.17■□□□□ 0.82
CLIP1-215ENST00000541108 TREML2Q5T2D2 321 aa20.17■□□□□ 0.82
CLIP1-215ENST00000541108 CCDC73Q6ZRK6 1079 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms