RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 MED10Q9BTT4 135 aa15.74■□□□□ 0.11
COLCA1-204ENST00000540738 SKILP12757 684 aa15.74■□□□□ 0.11
COLCA1-204ENST00000540738 DCUN1D2Q6PH85 259 aa15.74■□□□□ 0.11
COLCA1-204ENST00000540738 NUCKS1Q9H1E3 243 aaKnown RBP15.74■□□□□ 0.11
COLCA1-204ENST00000540738 USP17L15C9J2P7 530 aa15.74■□□□□ 0.11
COLCA1-204ENST00000540738 USP17L13C9JLJ4 530 aa15.74■□□□□ 0.11
COLCA1-204ENST00000540738 USP17L11C9JVI0 530 aa15.74■□□□□ 0.11
COLCA1-204ENST00000540738 USP17L18D6R9N7 530 aa15.74■□□□□ 0.11
COLCA1-204ENST00000540738 USP17L22D6RA61 530 aa15.74■□□□□ 0.11
COLCA1-204ENST00000540738 USP17L17D6RBQ6 530 aa15.74■□□□□ 0.11
COLCA1-204ENST00000540738 USP17L19D6RCP7 530 aa15.74■□□□□ 0.11
COLCA1-204ENST00000540738 USP17L20D6RJB6 530 aa15.74■□□□□ 0.11
COLCA1-204ENST00000540738 UBXN2AP68543 259 aa15.74■□□□□ 0.11
COLCA1-204ENST00000540738 RNASELQ05823 741 aaKnown RBP15.74■□□□□ 0.11
COLCA1-204ENST00000540738 USP17L24Q0WX57 530 aa15.74■□□□□ 0.11
COLCA1-204ENST00000540738 AP3B2Q13367 1082 aa15.74■□□□□ 0.11
COLCA1-204ENST00000540738 RSBN1LQ6PCB5 846 aaPredicted RBP15.74■□□□□ 0.11
COLCA1-204ENST00000540738 GABPB2Q8TAK5 448 aaPredicted RBP15.74■□□□□ 0.11
COLCA1-204ENST00000540738 FAM84BQ96KN1 310 aaPredicted RBP15.74■□□□□ 0.11
COLCA1-204ENST00000540738 CLSTN2Q9H4D0 955 aa15.74■□□□□ 0.11
COLCA1-204ENST00000540738 IFNKQ9P0W0 207 aa15.74■□□□□ 0.11
COLCA1-204ENST00000540738 ZNF157P51786 506 aaPredicted RBP15.73■□□□□ 0.11
COLCA1-204ENST00000540738 EEPD1Q7L9B9 569 aa15.73■□□□□ 0.11
COLCA1-204ENST00000540738 CCDC155Q8N6L0 562 aa15.73■□□□□ 0.11
COLCA1-204ENST00000540738 HESX1Q9UBX0 185 aa15.73■□□□□ 0.11
COLCA1-204ENST00000540738 BTBD18B2RXH4 712 aa15.73■□□□□ 0.11
COLCA1-204ENST00000540738 SPOPO43791 374 aa15.73■□□□□ 0.11
COLCA1-204ENST00000540738 ARMCX5Q6P1M9 558 aa15.73■□□□□ 0.11
COLCA1-204ENST00000540738 PDCL2Q8N4E4 241 aa15.73■□□□□ 0.11
COLCA1-204ENST00000540738 TMX1Q9H3N1 280 aa15.73■□□□□ 0.11
COLCA1-204ENST00000540738 INO80B-WBP1J3KQ70 363 aa15.73■□□□□ 0.11
COLCA1-204ENST00000540738 GAP43P17677 238 aa15.73■□□□□ 0.11
COLCA1-204ENST00000540738 FAM167AQ96KS9 214 aa15.73■□□□□ 0.11
COLCA1-204ENST00000540738 INO80BQ9C086 356 aaPredicted RBP15.73■□□□□ 0.11
COLCA1-204ENST00000540738 PANK4Q9NVE7 773 aa15.73■□□□□ 0.11
COLCA1-204ENST00000540738 MYO3AQ8NEV4 1616 aa15.73■□□□□ 0.11
COLCA1-204ENST00000540738 XRCC5P13010 732 aaKnown RBP15.73■□□□□ 0.11
COLCA1-204ENST00000540738 FERP16591 822 aa15.73■□□□□ 0.11
COLCA1-204ENST00000540738 ATP2A2P16615 1042 aaKnown RBP15.73■□□□□ 0.11
COLCA1-204ENST00000540738 TAF1CQ15572 869 aaPredicted RBP15.73■□□□□ 0.11
COLCA1-204ENST00000540738 SNRNP48Q6IEG0 339 aaKnown RBP15.73■□□□□ 0.11
COLCA1-204ENST00000540738 RAET1EQ8TD07 263 aa15.73■□□□□ 0.11
COLCA1-204ENST00000540738 METTL14Q9HCE5 456 aaKnown RBP15.73■□□□□ 0.11
COLCA1-204ENST00000540738 SH2B2O14492 632 aaPredicted RBP15.72■□□□□ 0.11
COLCA1-204ENST00000540738 TNPO2O14787 897 aaKnown RBP15.72■□□□□ 0.11
COLCA1-204ENST00000540738 SEC24BO95487 1268 aa15.72■□□□□ 0.11
COLCA1-204ENST00000540738 CYP4A11Q02928 519 aa15.72■□□□□ 0.11
COLCA1-204ENST00000540738 ADALQ6DHV7 355 aa15.72■□□□□ 0.11
COLCA1-204ENST00000540738 CEP170P1Q96L14 293 aa15.72■□□□□ 0.11
COLCA1-204ENST00000540738 TXNDC16Q9P2K2 825 aa15.72■□□□□ 0.11
COLCA1-204ENST00000540738 ABCB11O95342 1321 aa15.72■□□□□ 0.11
COLCA1-204ENST00000540738 AKR1B15C9JRZ8 316 aaPredicted RBP15.72■□□□□ 0.11
COLCA1-204ENST00000540738 FCER1AP12319 257 aa15.72■□□□□ 0.11
COLCA1-204ENST00000540738 MMP14P50281 582 aa15.72■□□□□ 0.11
COLCA1-204ENST00000540738 CYP2J2P51589 502 aa15.72■□□□□ 0.11
COLCA1-204ENST00000540738 FAM83BQ5T0W9 1011 aa15.72■□□□□ 0.11
COLCA1-204ENST00000540738 RCSD1Q6JBY9 416 aa15.72■□□□□ 0.11
COLCA1-204ENST00000540738 KIAA1841Q6NSI8 718 aa15.72■□□□□ 0.11
COLCA1-204ENST00000540738 METTL23Q86XA0 190 aa15.72■□□□□ 0.11
COLCA1-204ENST00000540738 C16orf45Q96MC5 204 aaPredicted RBP15.72■□□□□ 0.11
COLCA1-204ENST00000540738 VPS16Q9H269 839 aa15.72■□□□□ 0.11
COLCA1-204ENST00000540738 PRPF3O43395 683 aaKnown RBP15.72■□□□□ 0.11
COLCA1-204ENST00000540738 EIF2AK2P19525 551 aaKnown RBP15.72■□□□□ 0.11
COLCA1-204ENST00000540738 ECE1P42892 770 aa15.72■□□□□ 0.11
COLCA1-204ENST00000540738 MAP2K1Q02750 393 aaPredicted RBP15.72■□□□□ 0.11
COLCA1-204ENST00000540738 SLC9C1Q4G0N8 1177 aa15.72■□□□□ 0.11
COLCA1-204ENST00000540738 PRPF38AQ8NAV1 312 aaKnown RBP15.72■□□□□ 0.11
COLCA1-204ENST00000540738 NELFBQ8WX92 580 aa15.72■□□□□ 0.11
COLCA1-204ENST00000540738 NAP1L3Q99457 506 aaPredicted RBP15.72■□□□□ 0.11
COLCA1-204ENST00000540738 ANO3Q9BYT9 981 aa15.72■□□□□ 0.11
COLCA1-204ENST00000540738 IQCGQ9H095 443 aaKnown RBP15.72■□□□□ 0.11
COLCA1-204ENST00000540738 C1orf112Q9NSG2 853 aa15.72■□□□□ 0.11
COLCA1-204ENST00000540738 ENTPD3O75355 529 aa15.72■□□□□ 0.11
COLCA1-204ENST00000540738 SNAPC2Q13487 334 aa15.72■□□□□ 0.11
COLCA1-204ENST00000540738 PDXDC2PQ6P474 469 aa15.72■□□□□ 0.11
COLCA1-204ENST00000540738 ZNF589Q86UQ0 364 aaPredicted RBP15.72■□□□□ 0.11
COLCA1-204ENST00000540738 STAG1Q8WVM7 1258 aa15.72■□□□□ 0.11
COLCA1-204ENST00000540738 PARK7Q99497 189 aaKnown RBP15.72■□□□□ 0.11
COLCA1-204ENST00000540738 CYP2D7A0A087X1C5 515 aa15.72■□□□□ 0.11
COLCA1-204ENST00000540738 IFNAR1P17181 557 aa15.72■□□□□ 0.11
COLCA1-204ENST00000540738 SEPT2Q15019 361 aa15.72■□□□□ 0.11
COLCA1-204ENST00000540738 PROCA1Q8NCQ7 364 aaPredicted RBP15.72■□□□□ 0.11
COLCA1-204ENST00000540738 FBXO18Q8NFZ0 1043 aa15.72■□□□□ 0.11
COLCA1-204ENST00000540738 PPP1R14CQ8TAE6 165 aa15.72■□□□□ 0.11
COLCA1-204ENST00000540738 NSUN6Q8TEA1 469 aaKnown RBP15.72■□□□□ 0.11
COLCA1-204ENST00000540738 ZNF830Q96NB3 372 aaPredicted RBP15.72■□□□□ 0.11
COLCA1-204ENST00000540738 ZFYVE28Q9HCC9 887 aa15.72■□□□□ 0.11
COLCA1-204ENST00000540738 TPCN1Q9ULQ1 816 aa15.72■□□□□ 0.11
COLCA1-204ENST00000540738 MYL3P08590 195 aa15.71■□□□□ 0.11
COLCA1-204ENST00000540738 Q3C1V9 767 aa15.71■□□□□ 0.11
COLCA1-204ENST00000540738 MMS19Q96T76 1030 aa15.71■□□□□ 0.11
COLCA1-204ENST00000540738 ZSWIM5Q9P217 1185 aa15.71■□□□□ 0.11
COLCA1-204ENST00000540738 NLRP12P59046 1061 aa15.71■□□□□ 0.11
COLCA1-204ENST00000540738 AGBL3Q8NEM8 1001 aa15.71■□□□□ 0.11
COLCA1-204ENST00000540738 NLRP7Q8WX94 980 aa15.71■□□□□ 0.11
COLCA1-204ENST00000540738 JAKMIP2Q96AA8 810 aa15.71■□□□□ 0.11
COLCA1-204ENST00000540738 ZBED2Q9BTP6 218 aa15.71■□□□□ 0.11
COLCA1-204ENST00000540738 SREBF2Q12772 1141 aa15.71■□□□□ 0.11
COLCA1-204ENST00000540738 PTGDRQ13258 359 aa15.71■□□□□ 0.11
COLCA1-204ENST00000540738 FAM26FQ5R3K3 315 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms