RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 JAKMIP2Q96AA8 810 aa10.47□□□□□ -0.73
CLIP1-214ENST00000540539 FGD4Q96M96 766 aa10.47□□□□□ -0.73
CLIP1-214ENST00000540539 RPS6KC1Q96S38 1066 aa10.47□□□□□ -0.73
CLIP1-214ENST00000540539 KDM6AO15550 1401 aaPredicted RBP10.47□□□□□ -0.73
CLIP1-214ENST00000540539 CRB1P82279 1406 aa10.47□□□□□ -0.73
CLIP1-214ENST00000540539 HSF2BPO75031 334 aa10.47□□□□□ -0.73
CLIP1-214ENST00000540539 ME1P48163 572 aa10.47□□□□□ -0.73
CLIP1-214ENST00000540539 TBC1D1Q86TI0 1168 aaPredicted RBP10.47□□□□□ -0.73
CLIP1-214ENST00000540539 NME8Q8N427 588 aa10.47□□□□□ -0.73
CLIP1-214ENST00000540539 WHAMMQ8TF30 809 aa10.47□□□□□ -0.73
CLIP1-214ENST00000540539 MRPS27Q92552 414 aaKnown RBP10.47□□□□□ -0.73
CLIP1-214ENST00000540539 ZIM3Q96PE6 472 aa10.47□□□□□ -0.73
CLIP1-214ENST00000540539 TM6SF1Q9BZW5 370 aa10.47□□□□□ -0.73
CLIP1-214ENST00000540539 SWAP70Q9UH65 585 aa10.47□□□□□ -0.73
CLIP1-214ENST00000540539 SPG7Q9UQ90 795 aa10.47□□□□□ -0.73
CLIP1-214ENST00000540539 GMNCA6NCL1 334 aa10.46□□□□□ -0.73
CLIP1-214ENST00000540539 PFDN1O60925 122 aa10.46□□□□□ -0.73
CLIP1-214ENST00000540539 PDHA1P08559 390 aa10.46□□□□□ -0.73
CLIP1-214ENST00000540539 TRPC1P48995 793 aa10.46□□□□□ -0.73
CLIP1-214ENST00000540539 NDUFA8P51970 172 aa10.46□□□□□ -0.73
CLIP1-214ENST00000540539 USP46P62068 366 aa10.46□□□□□ -0.73
CLIP1-214ENST00000540539 GUCY1B3Q02153 619 aa10.46□□□□□ -0.73
CLIP1-214ENST00000540539 COL9A3Q14050 684 aaPredicted RBP10.46□□□□□ -0.73
CLIP1-214ENST00000540539 RASGRP2Q7LDG7 609 aa10.46□□□□□ -0.73
CLIP1-214ENST00000540539 FNBP4Q8N3X1 1017 aaPredicted RBP10.46□□□□□ -0.73
CLIP1-214ENST00000540539 LINS1Q8NG48 757 aa10.46□□□□□ -0.73
CLIP1-214ENST00000540539 USP28Q96RU2 1077 aa10.46□□□□□ -0.73
CLIP1-214ENST00000540539 SEC62Q99442 399 aaKnown RBP10.46□□□□□ -0.73
CLIP1-214ENST00000540539 HELLSQ9NRZ9 838 aa10.46□□□□□ -0.73
CLIP1-214ENST00000540539 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.46□□□□□ -0.73
CLIP1-214ENST00000540539 STAP2Q9UGK3 403 aa10.46□□□□□ -0.73
CLIP1-214ENST00000540539 MYH15Q9Y2K3 1946 aa10.46□□□□□ -0.73
CLIP1-214ENST00000540539 JAK2O60674 1132 aa10.46□□□□□ -0.74
CLIP1-214ENST00000540539 SLC3A2P08195 630 aaKnown RBP10.46□□□□□ -0.74
CLIP1-214ENST00000540539 ATP2A2P16615 1042 aaKnown RBP10.46□□□□□ -0.74
CLIP1-214ENST00000540539 RFC5P40937 340 aa10.46□□□□□ -0.74
CLIP1-214ENST00000540539 OXCT1P55809 520 aa10.46□□□□□ -0.74
CLIP1-214ENST00000540539 HDAC4P56524 1084 aa10.46□□□□□ -0.74
CLIP1-214ENST00000540539 NBPF14Q5TI25 921 aa10.46□□□□□ -0.74
CLIP1-214ENST00000540539 CCDC102BQ68D86 513 aa10.46□□□□□ -0.74
CLIP1-214ENST00000540539 RAPGEF4Q8WZA2 1011 aa10.46□□□□□ -0.74
CLIP1-214ENST00000540539 PRCCQ92733 491 aaPredicted RBP10.46□□□□□ -0.74
CLIP1-214ENST00000540539 PANX2Q96RD6 677 aa10.46□□□□□ -0.74
CLIP1-214ENST00000540539 SLF1Q9BQI6 1058 aa10.46□□□□□ -0.74
CLIP1-214ENST00000540539 SLC12A4Q9UP95 1085 aa10.46□□□□□ -0.74
CLIP1-214ENST00000540539 THRAP3Q9Y2W1 955 aaKnown RBP10.46□□□□□ -0.74
CLIP1-214ENST00000540539 BCL9LQ86UU0 1499 aa10.46□□□□□ -0.74
CLIP1-214ENST00000540539 C5orf60A6NFR6 353 aa10.45□□□□□ -0.74
CLIP1-214ENST00000540539 EIF3FO00303 357 aaPredicted RBP10.45□□□□□ -0.74
CLIP1-214ENST00000540539 BACH1O14867 736 aa10.45□□□□□ -0.74
CLIP1-214ENST00000540539 OR52E8Q6IFG1 317 aa10.45□□□□□ -0.74
CLIP1-214ENST00000540539 TMEM154Q6P9G4 183 aa10.45□□□□□ -0.74
CLIP1-214ENST00000540539 MYOCDQ8IZQ8 938 aa10.45□□□□□ -0.74
CLIP1-214ENST00000540539 TRIM11Q96F44 468 aa10.45□□□□□ -0.74
CLIP1-214ENST00000540539 ANKRD27Q96NW4 1050 aa10.45□□□□□ -0.74
CLIP1-214ENST00000540539 TRAPPC9Q96Q05 1148 aa10.45□□□□□ -0.74
CLIP1-214ENST00000540539 IQSEC3Q9UPP2 1182 aaPredicted RBP10.45□□□□□ -0.74
CLIP1-214ENST00000540539 DLG5Q8TDM6 1919 aa10.45□□□□□ -0.74
CLIP1-214ENST00000540539 ZNF233A6NK53 670 aa10.45□□□□□ -0.74
CLIP1-214ENST00000540539 TRAPPC3O43617 180 aa10.45□□□□□ -0.74
CLIP1-214ENST00000540539 CCDC166P0CW27 439 aa10.45□□□□□ -0.74
CLIP1-214ENST00000540539 HARSP12081 509 aaKnown RBP10.45□□□□□ -0.74
CLIP1-214ENST00000540539 NFE2L2Q16236 605 aa10.45□□□□□ -0.74
CLIP1-214ENST00000540539 HSP90AA4PQ58FG1 418 aa10.45□□□□□ -0.74
CLIP1-214ENST00000540539 PPP4R3AQ6IN85 833 aa10.45□□□□□ -0.74
CLIP1-214ENST00000540539 LMNTD2Q8IXW0 634 aa10.45□□□□□ -0.74
CLIP1-214ENST00000540539 SMC1BQ8NDV3 1235 aa10.45□□□□□ -0.74
CLIP1-214ENST00000540539 CTNNBL1Q8WYA6 563 aaPredicted RBP10.45□□□□□ -0.74
CLIP1-214ENST00000540539 ZNHIT6Q9NWK9 470 aaKnown RBP10.45□□□□□ -0.74
CLIP1-214ENST00000540539 USP21Q9UK80 565 aa10.45□□□□□ -0.74
CLIP1-214ENST00000540539 CEP131Q9UPN4 1083 aa10.45□□□□□ -0.74
CLIP1-214ENST00000540539 CFAP73A6NFT4 308 aa10.44□□□□□ -0.74
CLIP1-214ENST00000540539 H3BQV1 296 aa10.44□□□□□ -0.74
CLIP1-214ENST00000540539 SRGAP2O75044 1071 aa10.44□□□□□ -0.74
CLIP1-214ENST00000540539 RAB11FIP3O75154 756 aa10.44□□□□□ -0.74
CLIP1-214ENST00000540539 FLOT1O75955 427 aa10.44□□□□□ -0.74
CLIP1-214ENST00000540539 ZFXP17010 805 aaPredicted RBP10.44□□□□□ -0.74
CLIP1-214ENST00000540539 YY1P25490 414 aa10.44□□□□□ -0.74
CLIP1-214ENST00000540539 ITGB3BPQ13352 177 aaPredicted RBP10.44□□□□□ -0.74
CLIP1-214ENST00000540539 GLE1Q53GS7 698 aaKnown RBP10.44□□□□□ -0.74
CLIP1-214ENST00000540539 SMUG1Q53HV7 270 aa10.44□□□□□ -0.74
CLIP1-214ENST00000540539 RC3H1Q5TC82 1133 aaKnown RBP10.44□□□□□ -0.74
CLIP1-214ENST00000540539 IFFO2Q5TF58 517 aa10.44□□□□□ -0.74
CLIP1-214ENST00000540539 NANOGNBQ7Z5D8 188 aa10.44□□□□□ -0.74
CLIP1-214ENST00000540539 MLKLQ8NB16 471 aa10.44□□□□□ -0.74
CLIP1-214ENST00000540539 KLHDC4Q8TBB5 520 aa10.44□□□□□ -0.74
CLIP1-214ENST00000540539 CLIP3Q96DZ5 547 aa10.44□□□□□ -0.74
CLIP1-214ENST00000540539 CAPZA3Q96KX2 299 aa10.44□□□□□ -0.74
CLIP1-214ENST00000540539 UBAP1Q9NZ09 502 aa10.44□□□□□ -0.74
CLIP1-214ENST00000540539 DLGAP2Q9P1A6 1054 aa10.44□□□□□ -0.74
CLIP1-214ENST00000540539 TTF2Q9UNY4 1162 aaKnown RBP10.44□□□□□ -0.74
CLIP1-214ENST00000540539 MEGF6O75095 1541 aa10.44□□□□□ -0.74
CLIP1-214ENST00000540539 AFF2P51816 1311 aa10.44□□□□□ -0.74
CLIP1-214ENST00000540539 ENC1O14682 589 aa10.44□□□□□ -0.74
CLIP1-214ENST00000540539 LSM1O15116 133 aaKnown RBP10.44□□□□□ -0.74
CLIP1-214ENST00000540539 SUPT3HO75486 399 aa10.44□□□□□ -0.74
CLIP1-214ENST00000540539 GSTA1P08263 222 aa10.44□□□□□ -0.74
CLIP1-214ENST00000540539 TATP17735 454 aaPredicted RBP10.44□□□□□ -0.74
CLIP1-214ENST00000540539 HOXA10P31260 410 aaPredicted RBP10.44□□□□□ -0.74
CLIP1-214ENST00000540539 ALDH5A1P51649 535 aaPredicted RBP10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms