RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 PBX4Q9BYU1 374 aa16.1■□□□□ 0.17
SS18-204ENST00000539244 IL17RBQ9NRM6 502 aa16.1■□□□□ 0.17
SS18-204ENST00000539244 Q9Y3F1 56 aa16.1■□□□□ 0.17
SS18-204ENST00000539244 TTC28Q96AY4 2481 aa16.09■□□□□ 0.17
SS18-204ENST00000539244 MYO9BQ13459 2157 aa16.09■□□□□ 0.17
SS18-204ENST00000539244 BEX3Q00994 111 aa16.09■□□□□ 0.17
SS18-204ENST00000539244 FSCN1Q16658 493 aaKnown RBP16.09■□□□□ 0.17
SS18-204ENST00000539244 ZNF365Q70YC5 407 aa16.09■□□□□ 0.17
SS18-204ENST00000539244 TLK2Q86UE8 772 aa16.09■□□□□ 0.17
SS18-204ENST00000539244 OTUD7AQ8TE49 926 aaPredicted RBP16.09■□□□□ 0.17
SS18-204ENST00000539244 MORC4Q8TE76 937 aa16.09■□□□□ 0.17
SS18-204ENST00000539244 PPP1R12CQ9BZL4 782 aa16.09■□□□□ 0.17
SS18-204ENST00000539244 CYP39A1Q9NYL5 469 aa16.09■□□□□ 0.17
SS18-204ENST00000539244 ANAPC4Q9UJX5 808 aa16.09■□□□□ 0.17
SS18-204ENST00000539244 PRR12Q9ULL5 1215 aa16.09■□□□□ 0.17
SS18-204ENST00000539244 STX8Q9UNK0 236 aa16.09■□□□□ 0.17
SS18-204ENST00000539244 SALL3Q9BXA9 1300 aa16.09■□□□□ 0.17
SS18-204ENST00000539244 TSPY2A6NKD2 308 aa16.08■□□□□ 0.16
SS18-204ENST00000539244 FGRP09769 529 aa16.08■□□□□ 0.16
SS18-204ENST00000539244 ACRP10323 421 aa16.08■□□□□ 0.16
SS18-204ENST00000539244 ALAS1P13196 640 aa16.08■□□□□ 0.16
SS18-204ENST00000539244 SMPD1P17405 629 aa16.08■□□□□ 0.16
SS18-204ENST00000539244 IKQ13123 557 aaPredicted RBP16.08■□□□□ 0.16
SS18-204ENST00000539244 MUM1L1Q5H9M0 696 aa16.08■□□□□ 0.16
SS18-204ENST00000539244 IQSEC1Q6DN90 963 aa16.08■□□□□ 0.16
SS18-204ENST00000539244 TAPT1Q6NXT6 567 aa16.08■□□□□ 0.16
SS18-204ENST00000539244 CXCL17Q6UXB2 119 aa16.08■□□□□ 0.16
SS18-204ENST00000539244 KCTD1Q719H9 257 aa16.08■□□□□ 0.16
SS18-204ENST00000539244 USP38Q8NB14 1042 aa16.08■□□□□ 0.16
SS18-204ENST00000539244 HERVK_113Q902F9 699 aa16.08■□□□□ 0.16
SS18-204ENST00000539244 IL23AQ9NPF7 189 aa16.08■□□□□ 0.16
SS18-204ENST00000539244 ISY1Q9ULR0 285 aaKnown RBP16.08■□□□□ 0.16
SS18-204ENST00000539244 PCDHB15Q9Y5E8 787 aa16.08■□□□□ 0.16
SS18-204ENST00000539244 GRIN2DO15399 1336 aa16.08■□□□□ 0.16
SS18-204ENST00000539244 ORC4O43929 436 aa16.07■□□□□ 0.16
SS18-204ENST00000539244 ZEB2O60315 1214 aa16.07■□□□□ 0.16
SS18-204ENST00000539244 NMT2O60551 498 aa16.07■□□□□ 0.16
SS18-204ENST00000539244 MX1P20591 662 aa16.07■□□□□ 0.16
SS18-204ENST00000539244 CYP2C18P33260 490 aa16.07■□□□□ 0.16
SS18-204ENST00000539244 PBX2P40425 430 aa16.07■□□□□ 0.16
SS18-204ENST00000539244 CTDSPL2Q05D32 466 aa16.07■□□□□ 0.16
SS18-204ENST00000539244 ITGA7Q13683 1181 aa16.07■□□□□ 0.16
SS18-204ENST00000539244 NOL8Q76FK4 1167 aaKnown RBP16.07■□□□□ 0.16
SS18-204ENST00000539244 AP5M1Q9H0R1 490 aa16.07■□□□□ 0.16
SS18-204ENST00000539244 VTA1Q9NP79 307 aa16.07■□□□□ 0.16
SS18-204ENST00000539244 LOC102724159A0A0B4J2E5 919 aa16.06■□□□□ 0.16
SS18-204ENST00000539244 GRXCR1A8MXD5 290 aa16.06■□□□□ 0.16
SS18-204ENST00000539244 DYNC1LI2O43237 492 aaPredicted RBP16.06■□□□□ 0.16
SS18-204ENST00000539244 ICAM1P05362 532 aa16.06■□□□□ 0.16
SS18-204ENST00000539244 PWP2Q15269 919 aaKnown RBP16.06■□□□□ 0.16
SS18-204ENST00000539244 ALX1Q15699 326 aa16.06■□□□□ 0.16
SS18-204ENST00000539244 RAB30Q15771 203 aa16.06■□□□□ 0.16
SS18-204ENST00000539244 TJAP1Q5JTD0 557 aa16.06■□□□□ 0.16
SS18-204ENST00000539244 AKNAD1Q5T1N1 836 aa16.06■□□□□ 0.16
SS18-204ENST00000539244 BTNL9Q6UXG8 535 aa16.06■□□□□ 0.16
SS18-204ENST00000539244 RASGRP2Q7LDG7 609 aa16.06■□□□□ 0.16
SS18-204ENST00000539244 DCAF4Q8WV16 495 aa16.06■□□□□ 0.16
SS18-204ENST00000539244 GAS2L1Q99501 681 aaPredicted RBP16.06■□□□□ 0.16
SS18-204ENST00000539244 RANBP17Q9H2T7 1088 aaKnown RBP16.06■□□□□ 0.16
SS18-204ENST00000539244 HIPK3Q9H422 1215 aa16.06■□□□□ 0.16
SS18-204ENST00000539244 PDGFCQ9NRA1 345 aa16.06■□□□□ 0.16
SS18-204ENST00000539244 CCPG1Q9ULG6 757 aa16.06■□□□□ 0.16
SS18-204ENST00000539244 CHD9Q3L8U1 2897 aa16.06■□□□□ 0.16
SS18-204ENST00000539244 UMODL1Q5DID0 1318 aa16.05■□□□□ 0.16
SS18-204ENST00000539244 B4GALT4O60513 344 aa16.05■□□□□ 0.16
SS18-204ENST00000539244 FBXO16Q8IX29 292 aaPredicted RBP16.05■□□□□ 0.16
SS18-204ENST00000539244 NOC4LQ9BVI4 516 aaKnown RBP16.05■□□□□ 0.16
SS18-204ENST00000539244 MTIF3Q9H2K0 278 aaKnown RBP16.05■□□□□ 0.16
SS18-204ENST00000539244 INCENPQ9NQS7 918 aa16.05■□□□□ 0.16
SS18-204ENST00000539244 CXXC1Q9P0U4 656 aaPredicted RBP16.05■□□□□ 0.16
SS18-204ENST00000539244 DDX49Q9Y6V7 483 aaKnown RBP16.05■□□□□ 0.16
SS18-204ENST00000539244 GBF1Q92538 1859 aa16.05■□□□□ 0.16
SS18-204ENST00000539244 RANBP6O60518 1105 aaKnown RBP16.04■□□□□ 0.16
SS18-204ENST00000539244 FGBP02675 491 aa16.04■□□□□ 0.16
SS18-204ENST00000539244 PTGS1P23219 599 aa16.04■□□□□ 0.16
SS18-204ENST00000539244 SNAP25P60880 206 aa16.04■□□□□ 0.16
SS18-204ENST00000539244 DUSP28Q4G0W2 176 aa16.04■□□□□ 0.16
SS18-204ENST00000539244 VPS53Q5VIR6 699 aa16.04■□□□□ 0.16
SS18-204ENST00000539244 NSMFQ6X4W1 530 aa16.04■□□□□ 0.16
SS18-204ENST00000539244 EEPD1Q7L9B9 569 aa16.04■□□□□ 0.16
SS18-204ENST00000539244 TICAM2Q86XR7 235 aa16.04■□□□□ 0.16
SS18-204ENST00000539244 CHMP4CQ96CF2 233 aa16.04■□□□□ 0.16
SS18-204ENST00000539244 EVI5LQ96CN4 794 aa16.04■□□□□ 0.16
SS18-204ENST00000539244 PRDM6Q9NQX0 595 aa16.04■□□□□ 0.16
SS18-204ENST00000539244 HELLSQ9NRZ9 838 aa16.04■□□□□ 0.16
SS18-204ENST00000539244 TCP11L1Q9NUJ3 509 aa16.04■□□□□ 0.16
SS18-204ENST00000539244 ADD3Q9UEY8 706 aaKnown RBP16.04■□□□□ 0.16
SS18-204ENST00000539244 MSRAQ9UJ68 235 aa16.04■□□□□ 0.16
SS18-204ENST00000539244 CHD7Q9P2D1 2997 aa16.03■□□□□ 0.16
SS18-204ENST00000539244 RBM47A0AV96 593 aaKnown RBP16.03■□□□□ 0.16
SS18-204ENST00000539244 ALDH5A1P51649 535 aaPredicted RBP16.03■□□□□ 0.16
SS18-204ENST00000539244 TMEM63BQ5T3F8 832 aa16.03■□□□□ 0.16
SS18-204ENST00000539244 KIAA1211Q6ZU35 1233 aa16.03■□□□□ 0.16
SS18-204ENST00000539244 VWCEQ96DN2 955 aa16.03■□□□□ 0.16
SS18-204ENST00000539244 PURBQ96QR8 312 aaKnown RBP16.03■□□□□ 0.16
SS18-204ENST00000539244 TRPV6Q9H1D0 765 aa16.03■□□□□ 0.16
SS18-204ENST00000539244 WNT8AQ9H1J5 351 aa16.03■□□□□ 0.16
SS18-204ENST00000539244 PRDM12Q9H4Q4 367 aa16.03■□□□□ 0.16
SS18-204ENST00000539244 SCN10AQ9Y5Y9 1956 aa16.02■□□□□ 0.16
SS18-204ENST00000539244 ZMYM6O95789 1325 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms