RNA–Protein interactions for RNA: ENST00000536212.1

VPS33A-203, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-203ENST00000536212 CYLDQ9NQC7 956 aa6.55□□□□□ -1.36
VPS33A-203ENST00000536212 TMPRSS4Q9NRS4 437 aa6.55□□□□□ -1.36
VPS33A-203ENST00000536212 CNNM1Q9NRU3 951 aa6.55□□□□□ -1.36
VPS33A-203ENST00000536212 INTS13Q9NVM9 706 aa6.55□□□□□ -1.36
VPS33A-203ENST00000536212 FBXO2Q9UK22 296 aaPredicted RBP6.55□□□□□ -1.36
VPS33A-203ENST00000536212 MAN1B1Q9UKM7 699 aa6.55□□□□□ -1.36
VPS33A-203ENST00000536212 KCNH3Q9ULD8 1083 aa6.55□□□□□ -1.36
VPS33A-203ENST00000536212 WWC3Q9ULE0 1092 aa6.55□□□□□ -1.36
VPS33A-203ENST00000536212 ASAP1Q9ULH1 1129 aa6.55□□□□□ -1.36
VPS33A-203ENST00000536212 PCDHA5Q9Y5H7 936 aa6.55□□□□□ -1.36
VPS33A-203ENST00000536212 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.55□□□□□ -1.36
VPS33A-203ENST00000536212 DISP2A7MBM2 1401 aa6.55□□□□□ -1.36
VPS33A-203ENST00000536212 AKAP11Q9UKA4 1901 aa6.54□□□□□ -1.36
VPS33A-203ENST00000536212 GSG1L2A8MUP6 293 aa6.54□□□□□ -1.36
VPS33A-203ENST00000536212 IDH1O75874 414 aaKnown RBP6.54□□□□□ -1.36
VPS33A-203ENST00000536212 MMP1P03956 469 aa6.54□□□□□ -1.36
VPS33A-203ENST00000536212 PROCP04070 461 aa6.54□□□□□ -1.36
VPS33A-203ENST00000536212 SLFN14P0C7P3 912 aa6.54□□□□□ -1.36
VPS33A-203ENST00000536212 GNAT2P19087 354 aa6.54□□□□□ -1.36
VPS33A-203ENST00000536212 TOB1P50616 345 aaPredicted RBP6.54□□□□□ -1.36
VPS33A-203ENST00000536212 SRSF11Q05519 484 aaKnown RBP6.54□□□□□ -1.36
VPS33A-203ENST00000536212 PDE4BQ07343 736 aa6.54□□□□□ -1.36
VPS33A-203ENST00000536212 PNOCQ13519 176 aa6.54□□□□□ -1.36
VPS33A-203ENST00000536212 TRIM29Q14134 588 aa6.54□□□□□ -1.36
VPS33A-203ENST00000536212 ELF2Q15723 593 aa6.54□□□□□ -1.36
VPS33A-203ENST00000536212 OCLNQ16625 522 aa6.54□□□□□ -1.36
VPS33A-203ENST00000536212 LONRF3Q496Y0 759 aa6.54□□□□□ -1.36
VPS33A-203ENST00000536212 RILPL1Q5EBL4 403 aa6.54□□□□□ -1.36
VPS33A-203ENST00000536212 AKNAD1Q5T1N1 836 aa6.54□□□□□ -1.36
VPS33A-203ENST00000536212 OLFM4Q6UX06 510 aa6.54□□□□□ -1.36
VPS33A-203ENST00000536212 SYT10Q6XYQ8 523 aa6.54□□□□□ -1.36
VPS33A-203ENST00000536212 DNAJC14Q6Y2X3 702 aaPredicted RBP6.54□□□□□ -1.36
VPS33A-203ENST00000536212 NOSTRINQ8IVI9 506 aa6.54□□□□□ -1.36
VPS33A-203ENST00000536212 TMTC2Q8N394 836 aa6.54□□□□□ -1.36
VPS33A-203ENST00000536212 MLKLQ8NB16 471 aa6.54□□□□□ -1.36
VPS33A-203ENST00000536212 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.54□□□□□ -1.36
VPS33A-203ENST00000536212 ZNF784Q8NCA9 323 aaPredicted RBP6.54□□□□□ -1.36
VPS33A-203ENST00000536212 CNNM3Q8NE01 707 aa6.54□□□□□ -1.36
VPS33A-203ENST00000536212 SPATA20Q8TB22 786 aa6.54□□□□□ -1.36
VPS33A-203ENST00000536212 PHKBQ93100 1093 aa6.54□□□□□ -1.36
VPS33A-203ENST00000536212 CLIC6Q96NY7 704 aa6.54□□□□□ -1.36
VPS33A-203ENST00000536212 CXXC1Q9P0U4 656 aaPredicted RBP6.54□□□□□ -1.36
VPS33A-203ENST00000536212 ZSWIM5Q9P217 1185 aa6.54□□□□□ -1.36
VPS33A-203ENST00000536212 HOOK1Q9UJC3 728 aaKnown RBP6.54□□□□□ -1.36
VPS33A-203ENST00000536212 RTL9Q8NET4 1388 aa6.54□□□□□ -1.36
VPS33A-203ENST00000536212 ARAP2Q8WZ64 1704 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 BCL9O00512 1426 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 CCDC196A0A1B0GTZ2 297 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 VWA3AA6NCI4 1184 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 GOLGA6L9A6NEM1 432 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 FIGNL2A6NMB9 653 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 TMEM232C9JQI7 657 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 IFIT3O14879 490 aaKnown RBP6.53□□□□□ -1.36
VPS33A-203ENST00000536212 ARHGAP6O43182 974 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 SPINT1O43278 529 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 ATP8B1O43520 1251 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 TADA3O75528 432 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 SERPINC1P01008 464 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 APPP05067 770 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 TOP1P11387 765 aaKnown RBP6.53□□□□□ -1.36
VPS33A-203ENST00000536212 SLC5A1P13866 664 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 TCF3P15923 654 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 RXRAP19793 462 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 GPTP24298 496 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 ERCC5P28715 1186 aaPredicted RBP6.53□□□□□ -1.36
VPS33A-203ENST00000536212 IL6STP40189 918 aaPredicted RBP6.53□□□□□ -1.36
VPS33A-203ENST00000536212 MAP3K10Q02779 954 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 MAP3K12Q12852 859 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 MORC3Q14149 939 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 BMS1Q14692 1282 aaKnown RBP6.53□□□□□ -1.36
VPS33A-203ENST00000536212 POSTNQ15063 836 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 PPP2R5BQ15173 497 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 SAFBQ15424 915 aaKnown RBP eCLIP6.53□□□□□ -1.36
VPS33A-203ENST00000536212 RTN1Q16799 776 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 PPP1R26Q5T8A7 1209 aaPredicted RBP6.53□□□□□ -1.36
VPS33A-203ENST00000536212 NFXL1Q6ZNB6 911 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 MICU3Q86XE3 530 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 CRACR2BQ8N4Y2 399 aaPredicted RBP6.53□□□□□ -1.36
VPS33A-203ENST00000536212 SPATA5Q8NB90 893 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 TSEN2Q8NCE0 465 aaKnown RBP6.53□□□□□ -1.36
VPS33A-203ENST00000536212 AIDAQ96BJ3 306 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 DRC1Q96MC2 740 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 SLC4A9Q96Q91 983 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 MPHOSPH8Q99549 860 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 SLC26A6Q9BXS9 759 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 NAPBQ9H115 298 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 ZNF358Q9NW07 568 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 FANCLQ9NW38 375 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 ZNF446Q9NWS9 450 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 PGPEP1Q9NXJ5 209 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 DNAI1Q9UI46 699 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 ANAPC4Q9UJX5 808 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 SRPRBQ9Y5M8 271 aaKnown RBP6.53□□□□□ -1.36
VPS33A-203ENST00000536212 SLC12A7Q9Y666 1083 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 ABCA3Q99758 1704 aa6.53□□□□□ -1.36
VPS33A-203ENST00000536212 MYH7P12883 1935 aa6.52□□□□□ -1.37
VPS33A-203ENST00000536212 KRTAP9-6A0A140TA67 174 aa6.52□□□□□ -1.37
VPS33A-203ENST00000536212 CDC14CA4D256 554 aa6.52□□□□□ -1.37
VPS33A-203ENST00000536212 PHF20L1A8MW92 1017 aa6.52□□□□□ -1.37
VPS33A-203ENST00000536212 TMEM229AB2RXF0 380 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms