RNA–Protein interactions for RNA: ENST00000529563.5

USH1C-208, Transcript of USH1 protein network component harmonin, humanhuman

TSL 2

Gene USH1C, Length 942 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-208ENST00000529563 ADCY6O43306 1168 aa14.33□□□□□ -0.12
USH1C-208ENST00000529563 NMT2O60551 498 aa14.33□□□□□ -0.12
USH1C-208ENST00000529563 PLA2G6O60733 806 aa14.33□□□□□ -0.12
USH1C-208ENST00000529563 CABYRO75952 493 aa14.33□□□□□ -0.12
USH1C-208ENST00000529563 FSCN1Q16658 493 aaKnown RBP14.33□□□□□ -0.12
USH1C-208ENST00000529563 PSRC1Q6PGN9 363 aaPredicted RBP14.33□□□□□ -0.12
USH1C-208ENST00000529563 CXCL17Q6UXB2 119 aa14.33□□□□□ -0.12
USH1C-208ENST00000529563 FAM133AQ8N9E0 248 aa14.33□□□□□ -0.12
USH1C-208ENST00000529563 DCAF4Q8WV16 495 aa14.33□□□□□ -0.12
USH1C-208ENST00000529563 TIFAQ96CG3 184 aa14.33□□□□□ -0.12
USH1C-208ENST00000529563 FGD4Q96M96 766 aa14.33□□□□□ -0.12
USH1C-208ENST00000529563 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.33□□□□□ -0.12
USH1C-208ENST00000529563 INCENPQ9NQS7 918 aa14.33□□□□□ -0.12
USH1C-208ENST00000529563 TBX21Q9UL17 535 aa14.33□□□□□ -0.12
USH1C-208ENST00000529563 PRR12Q9ULL5 1215 aa14.33□□□□□ -0.12
USH1C-208ENST00000529563 PTPDC1A2A3K4 754 aa14.32□□□□□ -0.12
USH1C-208ENST00000529563 SOWAHBA6NEL2 793 aa14.32□□□□□ -0.12
USH1C-208ENST00000529563 TRIM6-TRIM34B2RNG4 842 aa14.32□□□□□ -0.12
USH1C-208ENST00000529563 ACRP10323 421 aa14.32□□□□□ -0.12
USH1C-208ENST00000529563 CSF2RAP15509 400 aa14.32□□□□□ -0.12
USH1C-208ENST00000529563 CDK7P50613 346 aa14.32□□□□□ -0.12
USH1C-208ENST00000529563 B4GALNT3Q6L9W6 998 aa14.32□□□□□ -0.12
USH1C-208ENST00000529563 KIAA1211Q6ZU35 1233 aa14.32□□□□□ -0.12
USH1C-208ENST00000529563 FBXO16Q8IX29 292 aaPredicted RBP14.32□□□□□ -0.12
USH1C-208ENST00000529563 GAS2L1Q99501 681 aaPredicted RBP14.32□□□□□ -0.12
USH1C-208ENST00000529563 MPHOSPH6Q99547 160 aaKnown RBP14.32□□□□□ -0.12
USH1C-208ENST00000529563 HELLSQ9NRZ9 838 aa14.32□□□□□ -0.12
USH1C-208ENST00000529563 ADD3Q9UEY8 706 aaKnown RBP14.32□□□□□ -0.12
USH1C-208ENST00000529563 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.32□□□□□ -0.12
USH1C-208ENST00000529563 MCM3APO60318 1980 aa14.32□□□□□ -0.12
USH1C-208ENST00000529563 ZNF536O15090 1300 aa14.32□□□□□ -0.12
USH1C-208ENST00000529563 LAMA2P24043 3122 aaKnown RBP14.32□□□□□ -0.12
USH1C-208ENST00000529563 ICAM1P05362 532 aa14.31□□□□□ -0.12
USH1C-208ENST00000529563 CYP2C18P33260 490 aa14.31□□□□□ -0.12
USH1C-208ENST00000529563 SLC16A2P36021 539 aa14.31□□□□□ -0.12
USH1C-208ENST00000529563 ITGA7Q13683 1181 aa14.31□□□□□ -0.12
USH1C-208ENST00000529563 MUM1L1Q5H9M0 696 aa14.31□□□□□ -0.12
USH1C-208ENST00000529563 VPS53Q5VIR6 699 aa14.31□□□□□ -0.12
USH1C-208ENST00000529563 SYDE2Q5VT97 1194 aa14.31□□□□□ -0.12
USH1C-208ENST00000529563 IQSEC1Q6DN90 963 aa14.31□□□□□ -0.12
USH1C-208ENST00000529563 FAM126BQ8IXS8 530 aa14.31□□□□□ -0.12
USH1C-208ENST00000529563 HIPK3Q9H422 1215 aa14.31□□□□□ -0.12
USH1C-208ENST00000529563 ZNF576Q9H609 170 aa14.31□□□□□ -0.12
USH1C-208ENST00000529563 GPCPD1Q9NPB8 672 aa14.31□□□□□ -0.12
USH1C-208ENST00000529563 GPHNQ9NQX3 736 aaPredicted RBP14.31□□□□□ -0.12
USH1C-208ENST00000529563 IL17RBQ9NRM6 502 aa14.31□□□□□ -0.12
USH1C-208ENST00000529563 CYP39A1Q9NYL5 469 aa14.31□□□□□ -0.12
USH1C-208ENST00000529563 MSRAQ9UJ68 235 aa14.31□□□□□ -0.12
USH1C-208ENST00000529563 FRMPD2Q68DX3 1309 aaPredicted RBP14.31□□□□□ -0.12
USH1C-208ENST00000529563 ORC4O43929 436 aa14.3□□□□□ -0.12
USH1C-208ENST00000529563 TOP1P11387 765 aaKnown RBP14.3□□□□□ -0.12
USH1C-208ENST00000529563 SMPD1P17405 629 aa14.3□□□□□ -0.12
USH1C-208ENST00000529563 GRIN2CQ14957 1233 aa14.3□□□□□ -0.12
USH1C-208ENST00000529563 MCMDC2Q4G0Z9 681 aa14.3□□□□□ -0.12
USH1C-208ENST00000529563 BRDTQ58F21 947 aaPredicted RBP14.3□□□□□ -0.12
USH1C-208ENST00000529563 TMEM240Q5SV17 173 aa14.3□□□□□ -0.12
USH1C-208ENST00000529563 ZNF365Q70YC5 407 aa14.3□□□□□ -0.12
USH1C-208ENST00000529563 RASGRP2Q7LDG7 609 aa14.3□□□□□ -0.12
USH1C-208ENST00000529563 PPM1EQ8WY54 764 aa14.3□□□□□ -0.12
USH1C-208ENST00000529563 RILPL2Q969X0 211 aa14.3□□□□□ -0.12
USH1C-208ENST00000529563 SEZ6LQ9BYH1 1024 aa14.3□□□□□ -0.12
USH1C-208ENST00000529563 KATNBL1Q9H079 304 aa14.3□□□□□ -0.12
USH1C-208ENST00000529563 VTA1Q9NP79 307 aa14.3□□□□□ -0.12
USH1C-208ENST00000529563 PDGFCQ9NRA1 345 aa14.3□□□□□ -0.12
USH1C-208ENST00000529563 ANAPC4Q9UJX5 808 aa14.3□□□□□ -0.12
USH1C-208ENST00000529563 DDX49Q9Y6V7 483 aaKnown RBP14.3□□□□□ -0.12
USH1C-208ENST00000529563 FGBP02675 491 aa14.29□□□□□ -0.12
USH1C-208ENST00000529563 CALML3P27482 149 aa14.29□□□□□ -0.12
USH1C-208ENST00000529563 BAATQ14032 418 aaPredicted RBP14.29□□□□□ -0.12
USH1C-208ENST00000529563 RAB30Q15771 203 aa14.29□□□□□ -0.12
USH1C-208ENST00000529563 TTBK2Q6IQ55 1244 aa14.29□□□□□ -0.12
USH1C-208ENST00000529563 SYMPKQ92797 1274 aaKnown RBP14.29□□□□□ -0.12
USH1C-208ENST00000529563 CCDC136Q96JN2 1154 aa14.29□□□□□ -0.12
USH1C-208ENST00000529563 IL23AQ9NPF7 189 aa14.29□□□□□ -0.12
USH1C-208ENST00000529563 PNMA2Q9UL42 364 aa14.29□□□□□ -0.12
USH1C-208ENST00000529563 GNEQ9Y223 722 aaKnown RBP14.29□□□□□ -0.12
USH1C-208ENST00000529563 ZBBXA8MT70 800 aa14.28□□□□□ -0.12
USH1C-208ENST00000529563 GRXCR1A8MXD5 290 aa14.28□□□□□ -0.12
USH1C-208ENST00000529563 ASTN1O14525 1302 aa14.28□□□□□ -0.12
USH1C-208ENST00000529563 CTAGE5O15320 804 aa14.28□□□□□ -0.12
USH1C-208ENST00000529563 MYL3P08590 195 aa14.28□□□□□ -0.12
USH1C-208ENST00000529563 PDE1AP54750 535 aa14.28□□□□□ -0.12
USH1C-208ENST00000529563 MFAP1P55081 439 aaKnown RBP14.28□□□□□ -0.12
USH1C-208ENST00000529563 CCL23P55773 120 aa14.28□□□□□ -0.12
USH1C-208ENST00000529563 HAND2P61296 217 aa14.28□□□□□ -0.12
USH1C-208ENST00000529563 PSMC6P62333 389 aa14.28□□□□□ -0.12
USH1C-208ENST00000529563 PDE4DQ08499 809 aa14.28□□□□□ -0.12
USH1C-208ENST00000529563 ALX1Q15699 326 aa14.28□□□□□ -0.12
USH1C-208ENST00000529563 MFSD6Q6ZSS7 791 aa14.28□□□□□ -0.12
USH1C-208ENST00000529563 RPUSD2Q8IZ73 545 aaKnown RBP14.28□□□□□ -0.12
USH1C-208ENST00000529563 RAD50Q92878 1312 aa14.28□□□□□ -0.12
USH1C-208ENST00000529563 FAM227BQ96M60 508 aa14.28□□□□□ -0.12
USH1C-208ENST00000529563 TMEM47Q9BQJ4 181 aa14.28□□□□□ -0.12
USH1C-208ENST00000529563 PBX4Q9BYU1 374 aa14.28□□□□□ -0.12
USH1C-208ENST00000529563 WDR11Q9BZH6 1224 aa14.28□□□□□ -0.12
USH1C-208ENST00000529563 RANBP17Q9H2T7 1088 aaKnown RBP14.28□□□□□ -0.12
USH1C-208ENST00000529563 POLR3EQ9NVU0 708 aa14.28□□□□□ -0.12
USH1C-208ENST00000529563 Q9Y3F1 56 aa14.28□□□□□ -0.12
USH1C-208ENST00000529563 UNC80Q8N2C7 3258 aa14.27□□□□□ -0.12
USH1C-208ENST00000529563 A0A0D9SFI3 127 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms