RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 CTNND1O60716 968 aaKnown RBP8.67□□□□□ -1.02
CD44-228ENST00000528455 LAMB1P07942 1786 aa8.67□□□□□ -1.02
CD44-228ENST00000528455 TSPY3P0CV98 308 aa8.67□□□□□ -1.02
CD44-228ENST00000528455 TSPY8P0CW00 308 aa8.67□□□□□ -1.02
CD44-228ENST00000528455 MYH8P13535 1937 aa8.67□□□□□ -1.02
CD44-228ENST00000528455 NOVP48745 357 aa8.67□□□□□ -1.02
CD44-228ENST00000528455 NCOA4Q13772 614 aa8.67□□□□□ -1.02
CD44-228ENST00000528455 PPP2R5BQ15173 497 aa8.67□□□□□ -1.02
CD44-228ENST00000528455 OXLD1Q5BKU9 147 aa8.67□□□□□ -1.02
CD44-228ENST00000528455 DDX60LQ5H9U9 1706 aaKnown RBP8.67□□□□□ -1.02
CD44-228ENST00000528455 RRP12Q5JTH9 1297 aaKnown RBP8.67□□□□□ -1.02
CD44-228ENST00000528455 NBPF12Q5TAG4 269 aaPredicted RBP8.67□□□□□ -1.02
CD44-228ENST00000528455 PRAMEF18Q5VWM3 479 aa8.67□□□□□ -1.02
CD44-228ENST00000528455 USP17L2Q6R6M4 530 aa8.67□□□□□ -1.02
CD44-228ENST00000528455 CYB5R4Q7L1T6 521 aa8.67□□□□□ -1.02
CD44-228ENST00000528455 STK11IPQ8N1F8 1099 aa8.67□□□□□ -1.02
CD44-228ENST00000528455 MKL1Q969V6 931 aa8.67□□□□□ -1.02
CD44-228ENST00000528455 ZNF274Q96GC6 653 aaPredicted RBP8.67□□□□□ -1.02
CD44-228ENST00000528455 ZSCAN31Q96LW9 406 aaPredicted RBP8.67□□□□□ -1.02
CD44-228ENST00000528455 ZSCAN10Q96SZ4 725 aaPredicted RBP8.67□□□□□ -1.02
CD44-228ENST00000528455 UPF3BQ9BZI7 483 aaKnown RBP8.67□□□□□ -1.02
CD44-228ENST00000528455 CABP5Q9NP86 173 aa8.67□□□□□ -1.02
CD44-228ENST00000528455 TOMM22Q9NS69 142 aa8.67□□□□□ -1.02
CD44-228ENST00000528455 SCAF8Q9UPN6 1271 aaKnown RBP8.67□□□□□ -1.02
CD44-228ENST00000528455 LIMCH1Q9UPQ0 1083 aa8.67□□□□□ -1.02
CD44-228ENST00000528455 NEDD4P46934 1319 aa8.66□□□□□ -1.02
CD44-228ENST00000528455 PHF20L1A8MW92 1017 aa8.66□□□□□ -1.02
CD44-228ENST00000528455 IFIT3O14879 490 aaKnown RBP8.66□□□□□ -1.02
CD44-228ENST00000528455 PPP1R12BO60237 982 aaPredicted RBP8.66□□□□□ -1.02
CD44-228ENST00000528455 USP2O75604 605 aaPredicted RBP8.66□□□□□ -1.02
CD44-228ENST00000528455 PRDM1O75626 825 aa8.66□□□□□ -1.02
CD44-228ENST00000528455 HSPA8P11142 646 aaKnown RBP8.66□□□□□ -1.02
CD44-228ENST00000528455 ADD1P35611 737 aaKnown RBP8.66□□□□□ -1.02
CD44-228ENST00000528455 ANP32AP39687 249 aaKnown RBP8.66□□□□□ -1.02
CD44-228ENST00000528455 CAP2P40123 477 aa8.66□□□□□ -1.02
CD44-228ENST00000528455 ANTXR2P58335 489 aa8.66□□□□□ -1.02
CD44-228ENST00000528455 FGD1P98174 961 aa8.66□□□□□ -1.02
CD44-228ENST00000528455 BECN1Q14457 450 aa8.66□□□□□ -1.02
CD44-228ENST00000528455 SEC23AQ15436 765 aa8.66□□□□□ -1.02
CD44-228ENST00000528455 SLC4A8Q2Y0W8 1093 aa8.66□□□□□ -1.02
CD44-228ENST00000528455 FAM47AQ5JRC9 791 aa8.66□□□□□ -1.02
CD44-228ENST00000528455 Q6ZUG5 572 aa8.66□□□□□ -1.02
CD44-228ENST00000528455 MIGA2Q7L4E1 593 aa8.66□□□□□ -1.02
CD44-228ENST00000528455 SGMS1Q86VZ5 419 aa8.66□□□□□ -1.02
CD44-228ENST00000528455 SLC44A5Q8NCS7 719 aa8.66□□□□□ -1.02
CD44-228ENST00000528455 UBAC1Q9BSL1 405 aa8.66□□□□□ -1.02
CD44-228ENST00000528455 ZNF341Q9BYN7 854 aa8.66□□□□□ -1.02
CD44-228ENST00000528455 KANSL2Q9H9L4 492 aa8.66□□□□□ -1.02
CD44-228ENST00000528455 IL17RBQ9NRM6 502 aa8.66□□□□□ -1.02
CD44-228ENST00000528455 ANGEL1Q9UNK9 670 aaKnown RBP8.66□□□□□ -1.02
CD44-228ENST00000528455 THSD7BQ9C0I4 1608 aa8.65□□□□□ -1.02
CD44-228ENST00000528455 IGKV6D-41A0A0C4DH26 115 aa8.65□□□□□ -1.02
CD44-228ENST00000528455 FAM155AB1AL88 458 aaPredicted RBP8.65□□□□□ -1.02
CD44-228ENST00000528455 CAPN5O15484 640 aaPredicted RBP8.65□□□□□ -1.02
CD44-228ENST00000528455 ASNSP08243 561 aa8.65□□□□□ -1.02
CD44-228ENST00000528455 CPA1P15085 419 aa8.65□□□□□ -1.02
CD44-228ENST00000528455 SMCPP49901 116 aaPredicted RBP8.65□□□□□ -1.02
CD44-228ENST00000528455 RCAN1P53805 252 aa8.65□□□□□ -1.02
CD44-228ENST00000528455 AK2P54819 239 aa8.65□□□□□ -1.02
CD44-228ENST00000528455 KIF23Q02241 960 aaPredicted RBP8.65□□□□□ -1.02
CD44-228ENST00000528455 USP4Q13107 963 aa8.65□□□□□ -1.02
CD44-228ENST00000528455 CBLBQ13191 982 aa8.65□□□□□ -1.02
CD44-228ENST00000528455 COL9A3Q14050 684 aaPredicted RBP8.65□□□□□ -1.02
CD44-228ENST00000528455 TOB2Q14106 344 aaPredicted RBP8.65□□□□□ -1.02
CD44-228ENST00000528455 MAP3K11Q16584 847 aa8.65□□□□□ -1.02
CD44-228ENST00000528455 ABCB5Q2M3G0 1257 aa8.65□□□□□ -1.02
CD44-228ENST00000528455 TMEM67Q5HYA8 995 aa8.65□□□□□ -1.02
CD44-228ENST00000528455 SYNE3Q6ZMZ3 975 aa8.65□□□□□ -1.02
CD44-228ENST00000528455 TMEM179Q6ZVK1 233 aa8.65□□□□□ -1.02
CD44-228ENST00000528455 Q6ZVU0 165 aa8.65□□□□□ -1.02
CD44-228ENST00000528455 CHST3Q7LGC8 479 aa8.65□□□□□ -1.02
CD44-228ENST00000528455 MAP3K14Q99558 947 aa8.65□□□□□ -1.02
CD44-228ENST00000528455 DNAJC18Q9H819 358 aa8.65□□□□□ -1.02
CD44-228ENST00000528455 MTMR4Q9NYA4 1195 aa8.65□□□□□ -1.02
CD44-228ENST00000528455 NYAP2Q9P242 653 aa8.65□□□□□ -1.02
CD44-228ENST00000528455 SYNPO2Q9UMS6 1093 aa8.65□□□□□ -1.02
CD44-228ENST00000528455 SIPA1L1O43166 1804 aa8.65□□□□□ -1.02
CD44-228ENST00000528455 CCDC69A6NI79 296 aa8.64□□□□□ -1.03
CD44-228ENST00000528455 UBE2Q2LH0YL09 131 aa8.64□□□□□ -1.03
CD44-228ENST00000528455 SH2B2O14492 632 aaPredicted RBP8.64□□□□□ -1.03
CD44-228ENST00000528455 CALM1P0DP23 149 aa8.64□□□□□ -1.03
CD44-228ENST00000528455 CALM2P0DP24 149 aa8.64□□□□□ -1.03
CD44-228ENST00000528455 CALM3P0DP25 149 aa8.64□□□□□ -1.03
CD44-228ENST00000528455 TOP1P11387 765 aaKnown RBP8.64□□□□□ -1.03
CD44-228ENST00000528455 AKR1B1P15121 316 aa8.64□□□□□ -1.03
CD44-228ENST00000528455 PDIA3P30101 505 aaKnown RBP8.64□□□□□ -1.03
CD44-228ENST00000528455 RRP1BQ14684 758 aaKnown RBP8.64□□□□□ -1.03
CD44-228ENST00000528455 WTAPQ15007 396 aa8.64□□□□□ -1.03
CD44-228ENST00000528455 EML3Q32P44 896 aa8.64□□□□□ -1.03
CD44-228ENST00000528455 IFIT1BQ5T764 474 aaKnown RBP8.64□□□□□ -1.03
CD44-228ENST00000528455 RCSD1Q6JBY9 416 aa8.64□□□□□ -1.03
CD44-228ENST00000528455 MOB2Q70IA6 237 aa8.64□□□□□ -1.03
CD44-228ENST00000528455 ARMC9Q7Z3E5 817 aa8.64□□□□□ -1.03
CD44-228ENST00000528455 SIAH1Q8IUQ4 282 aa8.64□□□□□ -1.03
CD44-228ENST00000528455 CRIPAKQ8N1N5 446 aa8.64□□□□□ -1.03
CD44-228ENST00000528455 ENAHQ8N8S7 591 aaPredicted RBP8.64□□□□□ -1.03
CD44-228ENST00000528455 BRF1Q92994 677 aa8.64□□□□□ -1.03
CD44-228ENST00000528455 ZIC5Q96T25 663 aa8.64□□□□□ -1.03
CD44-228ENST00000528455 ZKSCAN3Q9BRR0 538 aa8.64□□□□□ -1.03
CD44-228ENST00000528455 LY9Q9HBG7 655 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms