RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 UPF3AQ9H1J1 476 aaKnown RBP7.82□□□□□ -1.16
CD44-221ENST00000526000 HIPK3Q9H422 1215 aa7.82□□□□□ -1.16
CD44-221ENST00000526000 ACAD9Q9H845 621 aa7.82□□□□□ -1.16
CD44-221ENST00000526000 GPCPD1Q9NPB8 672 aa7.82□□□□□ -1.16
CD44-221ENST00000526000 IL23AQ9NPF7 189 aa7.82□□□□□ -1.16
CD44-221ENST00000526000 A1CFQ9NQ94 594 aaKnown RBP7.82□□□□□ -1.16
CD44-221ENST00000526000 FBXO40Q9UH90 709 aa7.82□□□□□ -1.16
CD44-221ENST00000526000 BAZ2AQ9UIF9 1905 aaKnown RBP7.82□□□□□ -1.16
CD44-221ENST00000526000 ZNF536O15090 1300 aa7.81□□□□□ -1.16
CD44-221ENST00000526000 TMEM265A0A087WTH1 108 aa7.81□□□□□ -1.16
CD44-221ENST00000526000 ATP2A1O14983 1001 aa7.81□□□□□ -1.16
CD44-221ENST00000526000 B4GALT4O60513 344 aa7.81□□□□□ -1.16
CD44-221ENST00000526000 RANBP6O60518 1105 aaKnown RBP7.81□□□□□ -1.16
CD44-221ENST00000526000 CD4P01730 458 aa7.81□□□□□ -1.16
CD44-221ENST00000526000 MYL3P08590 195 aa7.81□□□□□ -1.16
CD44-221ENST00000526000 CST5P28325 142 aaPredicted RBP7.81□□□□□ -1.16
CD44-221ENST00000526000 PDE4BQ07343 736 aa7.81□□□□□ -1.16
CD44-221ENST00000526000 PPARAQ07869 468 aa7.81□□□□□ -1.16
CD44-221ENST00000526000 BAATQ14032 418 aaPredicted RBP7.81□□□□□ -1.16
CD44-221ENST00000526000 FSCN1Q16658 493 aaKnown RBP7.81□□□□□ -1.16
CD44-221ENST00000526000 CCDC96Q2M329 555 aa7.81□□□□□ -1.16
CD44-221ENST00000526000 FAM47CQ5HY64 1035 aa7.81□□□□□ -1.16
CD44-221ENST00000526000 RRP12Q5JTH9 1297 aaKnown RBP7.81□□□□□ -1.16
CD44-221ENST00000526000 KRT40Q6A162 431 aa7.81□□□□□ -1.16
CD44-221ENST00000526000 RCSD1Q6JBY9 416 aa7.81□□□□□ -1.16
CD44-221ENST00000526000 GIMAP6Q6P9H5 292 aa7.81□□□□□ -1.16
CD44-221ENST00000526000 ZNF467Q7Z7K2 595 aaPredicted RBP7.81□□□□□ -1.16
CD44-221ENST00000526000 TLK2Q86UE8 772 aa7.81□□□□□ -1.16
CD44-221ENST00000526000 HERVK_113Q902F9 699 aa7.81□□□□□ -1.16
CD44-221ENST00000526000 GPATCH3Q96I76 525 aa7.81□□□□□ -1.16
CD44-221ENST00000526000 FSD1Q9BTV5 496 aa7.81□□□□□ -1.16
CD44-221ENST00000526000 NAPBQ9H115 298 aa7.81□□□□□ -1.16
CD44-221ENST00000526000 SLC28A3Q9HAS3 691 aa7.81□□□□□ -1.16
CD44-221ENST00000526000 TOMM22Q9NS69 142 aa7.81□□□□□ -1.16
CD44-221ENST00000526000 PRR12Q9ULL5 1215 aa7.81□□□□□ -1.16
CD44-221ENST00000526000 STX8Q9UNK0 236 aa7.81□□□□□ -1.16
CD44-221ENST00000526000 NAV1Q8NEY1 1877 aa7.81□□□□□ -1.16
CD44-221ENST00000526000 MROH7Q68CQ1 1323 aa7.8□□□□□ -1.16
CD44-221ENST00000526000 FRMPD2Q68DX3 1309 aaPredicted RBP7.8□□□□□ -1.16
CD44-221ENST00000526000 FRMPD3Q5JV73 1810 aa7.8□□□□□ -1.16
CD44-221ENST00000526000 ASB14A6NK59 587 aa7.8□□□□□ -1.16
CD44-221ENST00000526000 TSPY2A6NKD2 308 aa7.8□□□□□ -1.16
CD44-221ENST00000526000 ZEB2O60315 1214 aa7.8□□□□□ -1.16
CD44-221ENST00000526000 GNAT2P19087 354 aa7.8□□□□□ -1.16
CD44-221ENST00000526000 STAT2P52630 851 aa7.8□□□□□ -1.16
CD44-221ENST00000526000 TFF2Q03403 129 aa7.8□□□□□ -1.16
CD44-221ENST00000526000 TTLL4Q14679 1199 aa7.8□□□□□ -1.16
CD44-221ENST00000526000 RASIP1Q5U651 963 aa7.8□□□□□ -1.16
CD44-221ENST00000526000 IQSEC1Q6DN90 963 aa7.8□□□□□ -1.16
CD44-221ENST00000526000 TAPT1Q6NXT6 567 aa7.8□□□□□ -1.16
CD44-221ENST00000526000 PSRC1Q6PGN9 363 aaPredicted RBP7.8□□□□□ -1.16
CD44-221ENST00000526000 FAM160B2Q86V87 743 aa7.8□□□□□ -1.16
CD44-221ENST00000526000 GMCL1P1Q8NEA9 526 aa7.8□□□□□ -1.16
CD44-221ENST00000526000 IL27Q8NEV9 243 aa7.8□□□□□ -1.16
CD44-221ENST00000526000 ADAMTS19Q8TE59 1207 aa7.8□□□□□ -1.16
CD44-221ENST00000526000 COPS5Q92905 334 aa7.8□□□□□ -1.16
CD44-221ENST00000526000 ASB2Q96Q27 587 aa7.8□□□□□ -1.16
CD44-221ENST00000526000 NOC4LQ9BVI4 516 aaKnown RBP7.8□□□□□ -1.16
CD44-221ENST00000526000 NACAP1Q9BZK3 213 aa7.8□□□□□ -1.16
CD44-221ENST00000526000 WNT8AQ9H1J5 351 aa7.8□□□□□ -1.16
CD44-221ENST00000526000 CHMP4BQ9H444 224 aaKnown RBP7.8□□□□□ -1.16
CD44-221ENST00000526000 DCTPP1Q9H773 170 aa7.8□□□□□ -1.16
CD44-221ENST00000526000 ZNF287Q9HBT7 754 aa7.8□□□□□ -1.16
CD44-221ENST00000526000 IL17RBQ9NRM6 502 aa7.8□□□□□ -1.16
CD44-221ENST00000526000 TRMT13Q9NUP7 481 aaKnown RBP7.8□□□□□ -1.16
CD44-221ENST00000526000 THEGQ9P2T0 379 aa7.8□□□□□ -1.16
CD44-221ENST00000526000 CCPG1Q9ULG6 757 aa7.8□□□□□ -1.16
CD44-221ENST00000526000 GNEQ9Y223 722 aaKnown RBP7.8□□□□□ -1.16
CD44-221ENST00000526000 SLC4A7Q9Y6M7 1214 aa7.8□□□□□ -1.16
CD44-221ENST00000526000 PTPDC1A2A3K4 754 aa7.79□□□□□ -1.16
CD44-221ENST00000526000 ZFYP08048 801 aaPredicted RBP7.79□□□□□ -1.16
CD44-221ENST00000526000 SLC3A2P08195 630 aaKnown RBP7.79□□□□□ -1.16
CD44-221ENST00000526000 CALML3P27482 149 aa7.79□□□□□ -1.16
CD44-221ENST00000526000 OAZ1P54368 228 aa7.79□□□□□ -1.16
CD44-221ENST00000526000 MRPS5P82675 430 aaKnown RBP7.79□□□□□ -1.16
CD44-221ENST00000526000 RAB30Q15771 203 aa7.79□□□□□ -1.16
CD44-221ENST00000526000 VPS53Q5VIR6 699 aa7.79□□□□□ -1.16
CD44-221ENST00000526000 PPP2R2DQ66LE6 453 aa7.79□□□□□ -1.16
CD44-221ENST00000526000 RPUSD2Q8IZ73 545 aaKnown RBP7.79□□□□□ -1.16
CD44-221ENST00000526000 SLC43A3Q8NBI5 491 aa7.79□□□□□ -1.16
CD44-221ENST00000526000 UHRF1Q96T88 793 aaPredicted RBP7.79□□□□□ -1.16
CD44-221ENST00000526000 WDR11Q9BZH6 1224 aa7.79□□□□□ -1.16
CD44-221ENST00000526000 FTOQ9C0B1 505 aaKnown RBP eCLIP7.79□□□□□ -1.16
CD44-221ENST00000526000 CYP39A1Q9NYL5 469 aa7.79□□□□□ -1.16
CD44-221ENST00000526000 LTBP2Q14767 1821 aa7.79□□□□□ -1.16
CD44-221ENST00000526000 COL11A1P12107 1806 aaPredicted RBP7.78□□□□□ -1.16
CD44-221ENST00000526000 DNAH12Q6ZR08 3092 aa7.78□□□□□ -1.16
CD44-221ENST00000526000 NFIBO00712 420 aa7.78□□□□□ -1.16
CD44-221ENST00000526000 CABYRO75952 493 aa7.78□□□□□ -1.16
CD44-221ENST00000526000 CENPBP07199 599 aaPredicted RBP7.78□□□□□ -1.16
CD44-221ENST00000526000 ATP2A2P16615 1042 aaKnown RBP7.78□□□□□ -1.16
CD44-221ENST00000526000 KCNQ1P51787 676 aa7.78□□□□□ -1.16
CD44-221ENST00000526000 HAND2P61296 217 aa7.78□□□□□ -1.16
CD44-221ENST00000526000 NBPF20Q3BBV1 942 aa7.78□□□□□ -1.16
CD44-221ENST00000526000 TKFCQ3LXA3 575 aa7.78□□□□□ -1.16
CD44-221ENST00000526000 ZMYM1Q5SVZ6 1142 aa7.78□□□□□ -1.16
CD44-221ENST00000526000 AKNAD1Q5T1N1 836 aa7.78□□□□□ -1.16
CD44-221ENST00000526000 SPRED2Q7Z698 418 aa7.78□□□□□ -1.16
CD44-221ENST00000526000 TMCO2Q7Z6W1 182 aaPredicted RBP7.78□□□□□ -1.16
CD44-221ENST00000526000 OR6J1Q8NGC5 347 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms