RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 AMPD2Q01433 879 aa6.52□□□□□ -1.37
CD44-217ENST00000525348 NAALADL2Q58DX5 795 aa6.52□□□□□ -1.37
CD44-217ENST00000525348 HLA-DQA1Q5Y7H0 255 aa6.52□□□□□ -1.37
CD44-217ENST00000525348 CYP2R1Q6VVX0 501 aa6.52□□□□□ -1.37
CD44-217ENST00000525348 BVESQ8NE79 360 aa6.52□□□□□ -1.37
CD44-217ENST00000525348 SLC38A3Q99624 504 aa6.52□□□□□ -1.37
CD44-217ENST00000525348 TNFRSF12AQ9NP84 129 aa6.52□□□□□ -1.37
CD44-217ENST00000525348 OR14I1A6ND48 311 aa6.51□□□□□ -1.37
CD44-217ENST00000525348 C2orf71A6NGG8 1288 aa6.51□□□□□ -1.37
CD44-217ENST00000525348 KLF4O43474 513 aa6.51□□□□□ -1.37
CD44-217ENST00000525348 SUSD5O60279 629 aa6.51□□□□□ -1.37
CD44-217ENST00000525348 DDAH1O94760 285 aa6.51□□□□□ -1.37
CD44-217ENST00000525348 ZC3H6P61129 1189 aaKnown RBP6.51□□□□□ -1.37
CD44-217ENST00000525348 ANKS3Q6ZW76 656 aa6.51□□□□□ -1.37
CD44-217ENST00000525348 TRIM59Q8IWR1 403 aa6.51□□□□□ -1.37
CD44-217ENST00000525348 BHLHE22Q8NFJ8 381 aaPredicted RBP6.51□□□□□ -1.37
CD44-217ENST00000525348 SGPP1Q9BX95 441 aa6.51□□□□□ -1.37
CD44-217ENST00000525348 GCM1Q9NP62 436 aa6.51□□□□□ -1.37
CD44-217ENST00000525348 BACE2Q9Y5Z0 518 aa6.51□□□□□ -1.37
CD44-217ENST00000525348 PEX10O60683 326 aa6.5□□□□□ -1.37
CD44-217ENST00000525348 MED14OSP0DP75 135 aa6.5□□□□□ -1.37
CD44-217ENST00000525348 CYP4F8P98187 520 aa6.5□□□□□ -1.37
CD44-217ENST00000525348 FXNQ16595 210 aa6.5□□□□□ -1.37
CD44-217ENST00000525348 EEF1DP3Q658K8 133 aa6.5□□□□□ -1.37
CD44-217ENST00000525348 GTF2IRD2BQ6EKJ0 949 aa6.5□□□□□ -1.37
CD44-217ENST00000525348 GTF2IRD2Q86UP8 949 aa6.5□□□□□ -1.37
CD44-217ENST00000525348 PPP1R14AQ96A00 147 aa6.5□□□□□ -1.37
CD44-217ENST00000525348 SLC26A8Q96RN1 970 aa6.5□□□□□ -1.37
CD44-217ENST00000525348 CD320Q9NPF0 282 aa6.5□□□□□ -1.37
CD44-217ENST00000525348 ST7Q9NRC1 585 aa6.5□□□□□ -1.37
CD44-217ENST00000525348 KLHL14Q9P2G3 628 aa6.5□□□□□ -1.37
CD44-217ENST00000525348 FBLN5Q9UBX5 448 aa6.5□□□□□ -1.37
CD44-217ENST00000525348 PPP1R11O60927 126 aaPredicted RBP6.49□□□□□ -1.37
CD44-217ENST00000525348 ITGAVP06756 1048 aa6.49□□□□□ -1.37
CD44-217ENST00000525348 NAT2P11245 290 aa6.49□□□□□ -1.37
CD44-217ENST00000525348 TACR1P25103 407 aa6.49□□□□□ -1.37
CD44-217ENST00000525348 VIPR1P32241 457 aa6.49□□□□□ -1.37
CD44-217ENST00000525348 YBX1P67809 324 aaKnown RBP6.49□□□□□ -1.37
CD44-217ENST00000525348 SCRN1Q12765 414 aa6.49□□□□□ -1.37
CD44-217ENST00000525348 LAPTM5Q13571 262 aa6.49□□□□□ -1.37
CD44-217ENST00000525348 PKN1Q16512 942 aa6.49□□□□□ -1.37
CD44-217ENST00000525348 MBLAC2Q68D91 279 aa6.49□□□□□ -1.37
CD44-217ENST00000525348 ZNF227Q86WZ6 799 aa6.49□□□□□ -1.37
CD44-217ENST00000525348 CPNE8Q86YQ8 564 aa6.49□□□□□ -1.37
CD44-217ENST00000525348 JAMLQ86YT9 394 aa6.49□□□□□ -1.37
CD44-217ENST00000525348 BTN2A2Q8WVV5 523 aa6.49□□□□□ -1.37
CD44-217ENST00000525348 COPS5Q92905 334 aa6.49□□□□□ -1.37
CD44-217ENST00000525348 PPP1R16BQ96T49 567 aa6.49□□□□□ -1.37
CD44-217ENST00000525348 GPRC5CQ9NQ84 441 aa6.49□□□□□ -1.37
CD44-217ENST00000525348 TEX51A0A1B0GUA7 166 aa6.48□□□□□ -1.37
CD44-217ENST00000525348 DBX1A6NMT0 343 aa6.48□□□□□ -1.37
CD44-217ENST00000525348 TBC1D8O95759 1140 aa6.48□□□□□ -1.37
CD44-217ENST00000525348 GLDCP23378 1020 aa6.48□□□□□ -1.37
CD44-217ENST00000525348 RAP1GAPP47736 663 aa6.48□□□□□ -1.37
CD44-217ENST00000525348 SEPHS1P49903 392 aa6.48□□□□□ -1.37
CD44-217ENST00000525348 DLG4P78352 724 aa6.48□□□□□ -1.37
CD44-217ENST00000525348 DDR2Q16832 855 aa6.48□□□□□ -1.37
CD44-217ENST00000525348 SLC10A6Q3KNW5 377 aa6.48□□□□□ -1.37
CD44-217ENST00000525348 SV2CQ496J9 727 aa6.48□□□□□ -1.37
CD44-217ENST00000525348 ATG14Q6ZNE5 492 aa6.48□□□□□ -1.37
CD44-217ENST00000525348 C1QL4Q86Z23 238 aa6.48□□□□□ -1.37
CD44-217ENST00000525348 KCNN1Q92952 543 aa6.48□□□□□ -1.37
CD44-217ENST00000525348 CLEC1BQ9P126 229 aa6.48□□□□□ -1.37
CD44-217ENST00000525348 MBD1Q9UIS9 605 aaPredicted RBP6.48□□□□□ -1.37
CD44-217ENST00000525348 NUDT19A8MXV4 375 aa6.47□□□□□ -1.37
CD44-217ENST00000525348 HRKO00198 91 aa6.47□□□□□ -1.37
CD44-217ENST00000525348 ARNTLO00327 626 aa6.47□□□□□ -1.37
CD44-217ENST00000525348 NOP56O00567 594 aaKnown RBP6.47□□□□□ -1.37
CD44-217ENST00000525348 CAPNS1P04632 268 aa6.47□□□□□ -1.37
CD44-217ENST00000525348 THBDP07204 575 aa6.47□□□□□ -1.37
CD44-217ENST00000525348 TMEM253P0C7T8 217 aa6.47□□□□□ -1.37
CD44-217ENST00000525348 L1CAMP32004 1257 aa6.47□□□□□ -1.37
CD44-217ENST00000525348 SRSF3P84103 164 aaKnown RBP6.47□□□□□ -1.37
CD44-217ENST00000525348 SF1Q15637 639 aaKnown RBP6.47□□□□□ -1.37
CD44-217ENST00000525348 RPTNQ6XPR3 784 aa6.47□□□□□ -1.37
CD44-217ENST00000525348 NPLOC4Q8TAT6 608 aa6.47□□□□□ -1.37
CD44-217ENST00000525348 KRTAP9-9Q9BYP9 154 aa6.47□□□□□ -1.37
CD44-217ENST00000525348 KRTAP9-4Q9BYQ2 154 aa6.47□□□□□ -1.37
CD44-217ENST00000525348 NKX2-4Q9H2Z4 354 aa6.47□□□□□ -1.37
CD44-217ENST00000525348 CNTD2Q9H8S5 307 aa6.47□□□□□ -1.37
CD44-217ENST00000525348 PDLIM7Q9NR12 457 aa6.47□□□□□ -1.37
CD44-217ENST00000525348 PLA2G2DQ9UNK4 145 aa6.47□□□□□ -1.37
CD44-217ENST00000525348 HCFC2Q9Y5Z7 792 aa6.47□□□□□ -1.37
CD44-217ENST00000525348 ARID1BQ8NFD5 2236 aaPredicted RBP6.47□□□□□ -1.37
CD44-217ENST00000525348 NPIPB6E9PJ23 425 aa6.46□□□□□ -1.38
CD44-217ENST00000525348 NFIBO00712 420 aa6.46□□□□□ -1.38
CD44-217ENST00000525348 SEMA7AO75326 666 aa6.46□□□□□ -1.38
CD44-217ENST00000525348 MPOP05164 745 aa6.46□□□□□ -1.38
CD44-217ENST00000525348 DBHP09172 617 aa6.46□□□□□ -1.38
CD44-217ENST00000525348 PLS3P13797 630 aa6.46□□□□□ -1.38
CD44-217ENST00000525348 ARL4AP40617 200 aa6.46□□□□□ -1.38
CD44-217ENST00000525348 EPHB3P54753 998 aa6.46□□□□□ -1.38
CD44-217ENST00000525348 CBX2Q14781 532 aaPredicted RBP6.46□□□□□ -1.38
CD44-217ENST00000525348 RAB3GAP1Q15042 981 aa6.46□□□□□ -1.38
CD44-217ENST00000525348 POMZP3Q6PJE2 187 aa6.46□□□□□ -1.38
CD44-217ENST00000525348 CRACR2BQ8N4Y2 399 aaPredicted RBP6.46□□□□□ -1.38
CD44-217ENST00000525348 NLGN2Q8NFZ4 835 aa6.46□□□□□ -1.38
CD44-217ENST00000525348 FRS2Q8WU20 508 aa6.46□□□□□ -1.38
CD44-217ENST00000525348 CYP26B1Q9NR63 512 aa6.46□□□□□ -1.38
CD44-217ENST00000525348 TMEFF2Q9UIK5 374 aaPredicted RBP6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms