RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 CTAGE4Q8IX94 777 aa12.42□□□□□ -0.42
HDAC9-228ENST00000524023 GRAPLQ8TC17 118 aaPredicted RBP12.42□□□□□ -0.42
HDAC9-228ENST00000524023 ARHGEF1Q92888 912 aaKnown RBP12.42□□□□□ -0.42
HDAC9-228ENST00000524023 RTFDC1Q9BY42 306 aaPredicted RBP12.42□□□□□ -0.42
HDAC9-228ENST00000524023 CPVLQ9H3G5 476 aa12.42□□□□□ -0.42
HDAC9-228ENST00000524023 MYO6Q9UM54 1294 aa12.42□□□□□ -0.42
HDAC9-228ENST00000524023 RTCBQ9Y3I0 505 aaKnown RBP12.42□□□□□ -0.42
HDAC9-228ENST00000524023 BTAF1O14981 1849 aa12.42□□□□□ -0.42
HDAC9-228ENST00000524023 CCNT1O60563 726 aaKnown RBP12.42□□□□□ -0.42
HDAC9-228ENST00000524023 SRGNP10124 158 aa12.42□□□□□ -0.42
HDAC9-228ENST00000524023 NONOQ15233 471 aaKnown RBP eCLIP12.42□□□□□ -0.42
HDAC9-228ENST00000524023 TXNRD1Q16881 649 aa12.42□□□□□ -0.42
HDAC9-228ENST00000524023 TSR1Q2NL82 804 aaKnown RBP12.42□□□□□ -0.42
HDAC9-228ENST00000524023 LETM2Q2VYF4 491 aa12.42□□□□□ -0.42
HDAC9-228ENST00000524023 ZNF804AQ7Z570 1209 aa12.42□□□□□ -0.42
HDAC9-228ENST00000524023 CSGALNACT2Q8N6G5 542 aa12.42□□□□□ -0.42
HDAC9-228ENST00000524023 TRIM9Q9C026 710 aa12.42□□□□□ -0.42
HDAC9-228ENST00000524023 ZNF287Q9HBT7 754 aa12.42□□□□□ -0.42
HDAC9-228ENST00000524023 TRIM10Q9UDY6 481 aa12.42□□□□□ -0.42
HDAC9-228ENST00000524023 GUCA1BQ9UMX6 200 aa12.42□□□□□ -0.42
HDAC9-228ENST00000524023 SNED1Q8TER0 1413 aa12.41□□□□□ -0.42
HDAC9-228ENST00000524023 SMCO2A6NFE2 343 aa12.41□□□□□ -0.42
HDAC9-228ENST00000524023 B4DLN1 442 aa12.41□□□□□ -0.42
HDAC9-228ENST00000524023 CCNE1P24864 410 aa12.41□□□□□ -0.42
HDAC9-228ENST00000524023 CDK8P49336 464 aa12.41□□□□□ -0.42
HDAC9-228ENST00000524023 MEA1Q16626 185 aa12.41□□□□□ -0.42
HDAC9-228ENST00000524023 C16orf86Q6ZW13 317 aa12.41□□□□□ -0.42
HDAC9-228ENST00000524023 P2RX5Q93086 422 aa12.41□□□□□ -0.42
HDAC9-228ENST00000524023 EYA3Q99504 573 aa12.41□□□□□ -0.42
HDAC9-228ENST00000524023 C7orf25Q9BPX7 421 aa12.41□□□□□ -0.42
HDAC9-228ENST00000524023 TUBGCP2Q9BSJ2 902 aa12.41□□□□□ -0.42
HDAC9-228ENST00000524023 TTYH3Q9C0H2 523 aa12.41□□□□□ -0.42
HDAC9-228ENST00000524023 HAUS4Q9H6D7 363 aa12.41□□□□□ -0.42
HDAC9-228ENST00000524023 C6orf50Q9HD87 102 aa12.41□□□□□ -0.42
HDAC9-228ENST00000524023 EXOC1Q9NV70 894 aa12.41□□□□□ -0.42
HDAC9-228ENST00000524023 DDX60LQ5H9U9 1706 aaKnown RBP12.41□□□□□ -0.42
HDAC9-228ENST00000524023 BICDL2A1A5D9 508 aa12.4□□□□□ -0.42
HDAC9-228ENST00000524023 PSMD14O00487 310 aa12.4□□□□□ -0.42
HDAC9-228ENST00000524023 ERLIN1O75477 346 aa12.4□□□□□ -0.42
HDAC9-228ENST00000524023 RHOXF2BP0C7M4 288 aa12.4□□□□□ -0.42
HDAC9-228ENST00000524023 GNA11P29992 359 aa12.4□□□□□ -0.42
HDAC9-228ENST00000524023 HERVK_113P62684 666 aa12.4□□□□□ -0.42
HDAC9-228ENST00000524023 PDE4DQ08499 809 aa12.4□□□□□ -0.42
HDAC9-228ENST00000524023 STK4Q13043 487 aa12.4□□□□□ -0.42
HDAC9-228ENST00000524023 NEDD1Q8NHV4 660 aa12.4□□□□□ -0.42
HDAC9-228ENST00000524023 CCDC47Q96A33 483 aaKnown RBP12.4□□□□□ -0.42
HDAC9-228ENST00000524023 GPR101Q96P66 508 aaPredicted RBP12.4□□□□□ -0.42
HDAC9-228ENST00000524023 RHOXF2Q9BQY4 288 aa12.4□□□□□ -0.42
HDAC9-228ENST00000524023 RASSF10A6NK89 507 aa12.4□□□□□ -0.42
HDAC9-228ENST00000524023 BTDP43251 543 aa12.4□□□□□ -0.42
HDAC9-228ENST00000524023 ASIC1P78348 528 aa12.4□□□□□ -0.42
HDAC9-228ENST00000524023 ANKRD40Q6AI12 368 aa12.4□□□□□ -0.42
HDAC9-228ENST00000524023 USP17L2Q6R6M4 530 aa12.4□□□□□ -0.42
HDAC9-228ENST00000524023 C15orf52Q6ZUT6 534 aaKnown RBP12.4□□□□□ -0.42
HDAC9-228ENST00000524023 TRAPPC11Q7Z392 1133 aa12.4□□□□□ -0.42
HDAC9-228ENST00000524023 NEK8Q86SG6 692 aa12.4□□□□□ -0.42
HDAC9-228ENST00000524023 CERS3Q8IU89 383 aa12.4□□□□□ -0.42
HDAC9-228ENST00000524023 RRP36Q96EU6 259 aaKnown RBP12.4□□□□□ -0.42
HDAC9-228ENST00000524023 NUP58Q9BVL2 599 aa12.4□□□□□ -0.42
HDAC9-228ENST00000524023 ABCB6Q9NP58 842 aa12.4□□□□□ -0.42
HDAC9-228ENST00000524023 AGPAT5Q9NUQ2 364 aa12.4□□□□□ -0.42
HDAC9-228ENST00000524023 CCNL1Q9UK58 526 aaPredicted RBP12.4□□□□□ -0.42
HDAC9-228ENST00000524023 H3BQF6 201 aa12.39□□□□□ -0.43
HDAC9-228ENST00000524023 TECP42680 631 aa12.39□□□□□ -0.43
HDAC9-228ENST00000524023 VSNL1P62760 191 aa12.39□□□□□ -0.43
HDAC9-228ENST00000524023 KRT83P78385 493 aa12.39□□□□□ -0.43
HDAC9-228ENST00000524023 ST5P78524 1137 aa12.39□□□□□ -0.43
HDAC9-228ENST00000524023 TBC1D8BQ0IIM8 1120 aa12.39□□□□□ -0.43
HDAC9-228ENST00000524023 NCAPH2Q6IBW4 605 aa12.39□□□□□ -0.43
HDAC9-228ENST00000524023 ZNF662Q6ZS27 426 aa12.39□□□□□ -0.43
HDAC9-228ENST00000524023 HDXQ7Z353 690 aa12.39□□□□□ -0.43
HDAC9-228ENST00000524023 FAM114A1Q8IWE2 563 aa12.39□□□□□ -0.43
HDAC9-228ENST00000524023 RETREG2Q8NC44 543 aa12.39□□□□□ -0.43
HDAC9-228ENST00000524023 NOA1Q8NC60 698 aaKnown RBP12.39□□□□□ -0.43
HDAC9-228ENST00000524023 EEF2KMTQ96G04 330 aa12.39□□□□□ -0.43
HDAC9-228ENST00000524023 CNOT6LQ96LI5 555 aaKnown RBP12.39□□□□□ -0.43
HDAC9-228ENST00000524023 MMTAG2Q9BU76 263 aaKnown RBP12.39□□□□□ -0.43
HDAC9-228ENST00000524023 L1RE1Q9UN81 338 aa12.39□□□□□ -0.43
HDAC9-228ENST00000524023 GPR75-ASB3A0A0A6YYF3 556 aa12.39□□□□□ -0.43
HDAC9-228ENST00000524023 FCER1AP12319 257 aa12.39□□□□□ -0.43
HDAC9-228ENST00000524023 TRIM21P19474 475 aaKnown RBP12.39□□□□□ -0.43
HDAC9-228ENST00000524023 SMARCA1P28370 1054 aa12.39□□□□□ -0.43
HDAC9-228ENST00000524023 PPP1R2P41236 205 aa12.39□□□□□ -0.43
HDAC9-228ENST00000524023 KLK7P49862 253 aa12.39□□□□□ -0.43
HDAC9-228ENST00000524023 AMPD3Q01432 767 aa12.39□□□□□ -0.43
HDAC9-228ENST00000524023 CCDC122Q5T0U0 273 aa12.39□□□□□ -0.43
HDAC9-228ENST00000524023 SOGA3Q5TF21 947 aa12.39□□□□□ -0.43
HDAC9-228ENST00000524023 TEX11Q8IYF3 940 aa12.39□□□□□ -0.43
HDAC9-228ENST00000524023 MSL3Q8N5Y2 521 aaKnown RBP12.39□□□□□ -0.43
HDAC9-228ENST00000524023 TBCKQ8TEA7 893 aa12.39□□□□□ -0.43
HDAC9-228ENST00000524023 DNAJC5Q9H3Z4 198 aa12.39□□□□□ -0.43
HDAC9-228ENST00000524023 SEC63Q9UGP8 760 aaKnown RBP12.39□□□□□ -0.43
HDAC9-228ENST00000524023 TFR2Q9UP52 801 aa12.39□□□□□ -0.43
HDAC9-228ENST00000524023 TAF1LQ8IZX4 1826 aa12.38□□□□□ -0.43
HDAC9-228ENST00000524023 ENC1O14682 589 aa12.38□□□□□ -0.43
HDAC9-228ENST00000524023 TUBBP07437 444 aa12.38□□□□□ -0.43
HDAC9-228ENST00000524023 CYLC1P35663 651 aaPredicted RBP12.38□□□□□ -0.43
HDAC9-228ENST00000524023 MTIF2P46199 727 aaKnown RBP12.38□□□□□ -0.43
HDAC9-228ENST00000524023 ZBED6P86452 979 aa12.38□□□□□ -0.43
HDAC9-228ENST00000524023 ORC2Q13416 577 aaPredicted RBP12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 111.7 ms