RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 RASSF7Q02833 373 aa11.18□□□□□ -0.62
PDGFRB-207ENST00000520579 ESCO1Q5FWF5 840 aa11.18□□□□□ -0.62
PDGFRB-207ENST00000520579 METTL24Q5JXM2 366 aa11.18□□□□□ -0.62
PDGFRB-207ENST00000520579 FAM89AQ96GI7 184 aa11.18□□□□□ -0.62
PDGFRB-207ENST00000520579 KIF20BQ96Q89 1820 aa11.18□□□□□ -0.62
PDGFRB-207ENST00000520579 CPP00450 1065 aa11.18□□□□□ -0.62
PDGFRB-207ENST00000520579 PTPREP23469 700 aa11.18□□□□□ -0.62
PDGFRB-207ENST00000520579 CYLC1P35663 651 aaPredicted RBP11.18□□□□□ -0.62
PDGFRB-207ENST00000520579 MDM2Q00987 491 aaPredicted RBP11.18□□□□□ -0.62
PDGFRB-207ENST00000520579 WDR93Q6P2C0 686 aa11.18□□□□□ -0.62
PDGFRB-207ENST00000520579 HOOK3Q86VS8 718 aa11.18□□□□□ -0.62
PDGFRB-207ENST00000520579 PHACTR1Q9C0D0 580 aa11.18□□□□□ -0.62
PDGFRB-207ENST00000520579 HAUS4Q9H6D7 363 aa11.18□□□□□ -0.62
PDGFRB-207ENST00000520579 NHEJ1Q9H9Q4 299 aaPredicted RBP11.18□□□□□ -0.62
PDGFRB-207ENST00000520579 MKRN4PQ13434 485 aaPredicted RBP11.17□□□□□ -0.62
PDGFRB-207ENST00000520579 PIK3AP1Q6ZUJ8 805 aa11.17□□□□□ -0.62
PDGFRB-207ENST00000520579 DRAXINQ8NBI3 349 aaPredicted RBP11.17□□□□□ -0.62
PDGFRB-207ENST00000520579 SPATA4Q8NEY3 305 aa11.17□□□□□ -0.62
PDGFRB-207ENST00000520579 TPX2Q9ULW0 747 aaKnown RBP11.17□□□□□ -0.62
PDGFRB-207ENST00000520579 ALKQ9UM73 1620 aa11.17□□□□□ -0.62
PDGFRB-207ENST00000520579 GOLGA8KD6RF30 607 aa11.17□□□□□ -0.62
PDGFRB-207ENST00000520579 TACC1O75410 805 aa11.17□□□□□ -0.62
PDGFRB-207ENST00000520579 PRPHP41219 470 aa11.17□□□□□ -0.62
PDGFRB-207ENST00000520579 MAGEA8P43361 318 aa11.17□□□□□ -0.62
PDGFRB-207ENST00000520579 PMS1P54277 932 aaKnown RBP11.17□□□□□ -0.62
PDGFRB-207ENST00000520579 CCDC15Q0P6D6 951 aa11.17□□□□□ -0.62
PDGFRB-207ENST00000520579 LLGL1Q15334 1064 aa11.17□□□□□ -0.62
PDGFRB-207ENST00000520579 FAM114A1Q8IWE2 563 aa11.17□□□□□ -0.62
PDGFRB-207ENST00000520579 PARP9Q8IXQ6 854 aa11.17□□□□□ -0.62
PDGFRB-207ENST00000520579 STAMBPL1Q96FJ0 436 aa11.17□□□□□ -0.62
PDGFRB-207ENST00000520579 IFIH1Q9BYX4 1025 aaKnown RBP11.17□□□□□ -0.62
PDGFRB-207ENST00000520579 CNNM1Q9NRU3 951 aa11.17□□□□□ -0.62
PDGFRB-207ENST00000520579 ZSWIM5Q9P217 1185 aa11.17□□□□□ -0.62
PDGFRB-207ENST00000520579 CDC42BPGQ6DT37 1551 aa11.17□□□□□ -0.62
PDGFRB-207ENST00000520579 CD2APQ9Y5K6 639 aa11.17□□□□□ -0.62
PDGFRB-207ENST00000520579 SH3TC1Q8TE82 1336 aa11.17□□□□□ -0.62
PDGFRB-207ENST00000520579 PPP1R3GB7ZBB8 358 aa11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 FAM163BP0C2L3 166 aa11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 PRCPP42785 496 aa11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 RFX5P48382 616 aaPredicted RBP11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 PTGDRQ13258 359 aa11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 QPCTQ16769 361 aa11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 TCP11X2Q5H9J9 407 aa11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 MGARPQ8TDB4 240 aa11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 NKRFO15226 690 aaKnown RBP eCLIP11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 GLI1P08151 1106 aa11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 NEFHP12036 1026 aa11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 AARSP49588 968 aaKnown RBP eCLIP11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 WTAPQ15007 396 aa11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 AKAP4Q5JQC9 854 aa11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 ACBD5Q5T8D3 534 aaPredicted RBP11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 TMEM110Q86TL2 294 aa11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 MYCBPAPQ8TBZ2 947 aa11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 DPH5Q9H2P9 285 aa11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 MLXIPLQ9NP71 852 aa11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 PLAAQ9Y263 795 aa11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 SH2B2O14492 632 aaPredicted RBP11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 ATP6V1G1O75348 118 aa11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 TATP17735 454 aaPredicted RBP11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 KRT83P78385 493 aa11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 EHHADHQ08426 723 aa11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 IFFO1Q0D2I5 559 aa11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 TCIRG1Q13488 830 aa11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 SETDB1Q15047 1291 aa11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 SPTY2D1Q68D10 685 aaPredicted RBP11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 CAPRIN2Q6IMN6 1127 aaKnown RBP11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 IQCEQ6IPM2 695 aa11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 CYB5D1Q6P9G0 228 aa11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 NOVA2Q9UNW9 492 aaKnown RBP11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 HECW2Q9P2P5 1572 aa11.16□□□□□ -0.62
PDGFRB-207ENST00000520579 DYTNA2CJ06 578 aa11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 PPP1R37O75864 691 aa11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 MBD4O95243 580 aa11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 ERCC5P28715 1186 aaPredicted RBP11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 STAT6P42226 847 aa11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 ADCY1Q08828 1119 aa11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 RRAGAQ7L523 313 aa11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 APTXQ7Z2E3 356 aaKnown RBP11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 SPATA21Q7Z572 469 aa11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 EXOC8Q8IYI6 725 aa11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 SYCP3Q8IZU3 236 aa11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 TRIML1Q8N9V2 468 aa11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 AP1M1Q9BXS5 423 aa11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 PCDHGA4Q9Y5G9 962 aa11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 DIP2BQ9P265 1576 aa11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 ZNF532Q9HCE3 1301 aa11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 USO1O60763 962 aaKnown RBP11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 PRPF4BQ13523 1007 aaKnown RBP11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 ZNF790Q6PG37 636 aa11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 CSGALNACT2Q8N6G5 542 aa11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 STIM2Q9P246 746 aa11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 ABCF2Q9UG63 623 aa11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 SRCAPQ6ZRS2 3230 aa11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 ZC3H4Q9UPT8 1303 aaKnown RBP11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 CYP2D7A0A087X1C5 515 aa11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 EYA2O00167 538 aa11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 MMP1P03956 469 aa11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 MAGEA1P43355 309 aa11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 RAB27AP51159 221 aa11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 RILPL1Q5EBL4 403 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms