RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 CRYBG1Q9Y4K1 1723 aa5.72□□□□□ -1.49
USP54-217ENST00000498213 FAM155AB1AL88 458 aaPredicted RBP5.72□□□□□ -1.49
USP54-217ENST00000498213 GCP02774 474 aa5.72□□□□□ -1.49
USP54-217ENST00000498213 PGRP06401 933 aa5.72□□□□□ -1.49
USP54-217ENST00000498213 TFE3P19532 575 aaPredicted RBP5.72□□□□□ -1.49
USP54-217ENST00000498213 BNIP3Q12983 259 aa5.72□□□□□ -1.49
USP54-217ENST00000498213 PWP1Q13610 501 aa5.72□□□□□ -1.49
USP54-217ENST00000498213 ZNF124Q15973 351 aa5.72□□□□□ -1.49
USP54-217ENST00000498213 SPRED2Q7Z698 418 aa5.72□□□□□ -1.49
USP54-217ENST00000498213 RELL1Q8IUW5 271 aa5.72□□□□□ -1.49
USP54-217ENST00000498213 MFSD2AQ8NA29 543 aa5.72□□□□□ -1.49
USP54-217ENST00000498213 XAGE3Q8WTP9 111 aa5.72□□□□□ -1.49
USP54-217ENST00000498213 SYTL4Q96C24 671 aaPredicted RBP5.72□□□□□ -1.49
USP54-217ENST00000498213 GCC1Q96CN9 775 aa5.72□□□□□ -1.49
USP54-217ENST00000498213 FBRSQ9HAH7 460 aa5.72□□□□□ -1.49
USP54-217ENST00000498213 POGKQ9P215 609 aa5.72□□□□□ -1.49
USP54-217ENST00000498213 CCNL1Q9UK58 526 aaPredicted RBP5.72□□□□□ -1.49
USP54-217ENST00000498213 TLR6Q9Y2C9 796 aa5.72□□□□□ -1.49
USP54-217ENST00000498213 CICQ96RK0 1608 aaPredicted RBP5.71□□□□□ -1.5
USP54-217ENST00000498213 F6X3S4 739 aa5.71□□□□□ -1.5
USP54-217ENST00000498213 IGF2BP3O00425 579 aaKnown RBP eCLIP5.71□□□□□ -1.5
USP54-217ENST00000498213 CTSHP09668 335 aa5.71□□□□□ -1.5
USP54-217ENST00000498213 DPEP1P16444 411 aa5.71□□□□□ -1.5
USP54-217ENST00000498213 CDK8P49336 464 aa5.71□□□□□ -1.5
USP54-217ENST00000498213 MAP2K1Q02750 393 aaPredicted RBP5.71□□□□□ -1.5
USP54-217ENST00000498213 RPL6Q02878 288 aaKnown RBP5.71□□□□□ -1.5
USP54-217ENST00000498213 GRM1Q13255 1194 aa5.71□□□□□ -1.5
USP54-217ENST00000498213 ANGEL2Q5VTE6 544 aaKnown RBP5.71□□□□□ -1.5
USP54-217ENST00000498213 WFDC3Q8IUB2 231 aa5.71□□□□□ -1.5
USP54-217ENST00000498213 GIPC2Q8TF65 315 aa5.71□□□□□ -1.5
USP54-217ENST00000498213 ASB11Q8WXH4 323 aa5.71□□□□□ -1.5
USP54-217ENST00000498213 MAPK8IP1Q9UQF2 711 aa5.71□□□□□ -1.5
USP54-217ENST00000498213 TACC3Q9Y6A5 838 aa5.71□□□□□ -1.5
USP54-217ENST00000498213 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.71□□□□□ -1.5
USP54-217ENST00000498213 ANKARQ7Z5J8 1434 aa5.71□□□□□ -1.5
USP54-217ENST00000498213 PITPNM2Q9BZ72 1349 aa5.71□□□□□ -1.5
USP54-217ENST00000498213 USP31Q70CQ4 1352 aa5.7□□□□□ -1.5
USP54-217ENST00000498213 DBX1A6NMT0 343 aa5.7□□□□□ -1.5
USP54-217ENST00000498213 CD8BP10966 210 aa5.7□□□□□ -1.5
USP54-217ENST00000498213 CYP7A1P22680 504 aa5.7□□□□□ -1.5
USP54-217ENST00000498213 GBP2P32456 591 aaPredicted RBP5.7□□□□□ -1.5
USP54-217ENST00000498213 FXR1P51114 621 aaKnown RBP eCLIP5.7□□□□□ -1.5
USP54-217ENST00000498213 TAGLNQ01995 201 aaKnown RBP5.7□□□□□ -1.5
USP54-217ENST00000498213 IKZF1Q13422 519 aa5.7□□□□□ -1.5
USP54-217ENST00000498213 SLBPQ14493 270 aaKnown RBP eCLIP5.7□□□□□ -1.5
USP54-217ENST00000498213 NKG7Q16617 165 aa5.7□□□□□ -1.5
USP54-217ENST00000498213 SNAP47Q5SQN1 464 aa5.7□□□□□ -1.5
USP54-217ENST00000498213 SFRP5Q5T4F7 317 aa5.7□□□□□ -1.5
USP54-217ENST00000498213 TMCO4Q5TGY1 634 aa5.7□□□□□ -1.5
USP54-217ENST00000498213 PRAMEF13Q5VWM6 474 aa5.7□□□□□ -1.5
USP54-217ENST00000498213 LETMD1Q6P1Q0 360 aa5.7□□□□□ -1.5
USP54-217ENST00000498213 PHC3Q8NDX5 983 aa5.7□□□□□ -1.5
USP54-217ENST00000498213 PI4K2BQ8TCG2 481 aa5.7□□□□□ -1.5
USP54-217ENST00000498213 HEXIM2Q96MH2 286 aaKnown RBP5.7□□□□□ -1.5
USP54-217ENST00000498213 SNX11Q9Y5W9 270 aa5.7□□□□□ -1.5
USP54-217ENST00000498213 U3KQE9 123 aa5.7□□□□□ -1.5
USP54-217ENST00000498213 YTHDC2Q9H6S0 1430 aaKnown RBP5.7□□□□□ -1.5
USP54-217ENST00000498213 WDR17Q8IZU2 1322 aa5.7□□□□□ -1.5
USP54-217ENST00000498213 LMO7Q8WWI1 1683 aa5.69□□□□□ -1.5
USP54-217ENST00000498213 EIF3AQ14152 1382 aaKnown RBP5.69□□□□□ -1.5
USP54-217ENST00000498213 LOC105371045A0A1W2PR82 267 aa5.69□□□□□ -1.5
USP54-217ENST00000498213 GLTPD2A6NH11 291 aa5.69□□□□□ -1.5
USP54-217ENST00000498213 FARP2O94887 1054 aaPredicted RBP5.69□□□□□ -1.5
USP54-217ENST00000498213 SLITRK5O94991 958 aa5.69□□□□□ -1.5
USP54-217ENST00000498213 EOMESO95936 686 aa5.69□□□□□ -1.5
USP54-217ENST00000498213 CST3P01034 146 aaPredicted RBP5.69□□□□□ -1.5
USP54-217ENST00000498213 CAP2P40123 477 aa5.69□□□□□ -1.5
USP54-217ENST00000498213 CD96P40200 585 aa5.69□□□□□ -1.5
USP54-217ENST00000498213 CLCN7P51798 805 aa5.69□□□□□ -1.5
USP54-217ENST00000498213 RGL3Q3MIN7 710 aa5.69□□□□□ -1.5
USP54-217ENST00000498213 ATG4DQ86TL0 474 aaPredicted RBP5.69□□□□□ -1.5
USP54-217ENST00000498213 AMIGO3Q86WK7 504 aa5.69□□□□□ -1.5
USP54-217ENST00000498213 MFSD4AQ8N468 514 aa5.69□□□□□ -1.5
USP54-217ENST00000498213 DPH2Q9BQC3 489 aaPredicted RBP5.69□□□□□ -1.5
USP54-217ENST00000498213 RC3H2Q9HBD1 1191 aaKnown RBP5.69□□□□□ -1.5
USP54-217ENST00000498213 PLAGL2Q9UPG8 496 aa5.69□□□□□ -1.5
USP54-217ENST00000498213 WDR33Q9C0J8 1336 aaKnown RBP5.69□□□□□ -1.5
USP54-217ENST00000498213 IFT172Q9UG01 1749 aa5.68□□□□□ -1.5
USP54-217ENST00000498213 GFRA2O00451 464 aa5.68□□□□□ -1.5
USP54-217ENST00000498213 CBX7O95931 251 aa5.68□□□□□ -1.5
USP54-217ENST00000498213 FUT4P22083 530 aa5.68□□□□□ -1.5
USP54-217ENST00000498213 TGFB2P61812 414 aa5.68□□□□□ -1.5
USP54-217ENST00000498213 LMNB2Q03252 620 aa5.68□□□□□ -1.5
USP54-217ENST00000498213 CAMK2GQ13555 558 aaPredicted RBP5.68□□□□□ -1.5
USP54-217ENST00000498213 PKN1Q16512 942 aa5.68□□□□□ -1.5
USP54-217ENST00000498213 DEFB115Q30KQ5 88 aa5.68□□□□□ -1.5
USP54-217ENST00000498213 CDKAL1Q5VV42 579 aa5.68□□□□□ -1.5
USP54-217ENST00000498213 BNC2Q6ZN30 1099 aaPredicted RBP5.68□□□□□ -1.5
USP54-217ENST00000498213 CCDC84Q86UT8 332 aaPredicted RBP5.68□□□□□ -1.5
USP54-217ENST00000498213 SPACA3Q8IXA5 215 aa5.68□□□□□ -1.5
USP54-217ENST00000498213 FLAD1Q8NFF5 587 aa5.68□□□□□ -1.5
USP54-217ENST00000498213 FAM168AQ92567 244 aa5.68□□□□□ -1.5
USP54-217ENST00000498213 TNKS2Q9H2K2 1166 aa5.68□□□□□ -1.5
USP54-217ENST00000498213 TUBGCP6Q96RT7 1819 aa5.68□□□□□ -1.5
USP54-217ENST00000498213 NHSQ6T4R5 1651 aa5.68□□□□□ -1.5
USP54-217ENST00000498213 A0A0C4DFX4 3053 aa5.68□□□□□ -1.5
USP54-217ENST00000498213 BTAF1O14981 1849 aa5.67□□□□□ -1.5
USP54-217ENST00000498213 MINDY4BA8MYZ0 360 aa5.67□□□□□ -1.5
USP54-217ENST00000498213 PF4P02776 101 aa5.67□□□□□ -1.5
USP54-217ENST00000498213 MMP10P09238 476 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms