RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 M0R2N6 131 aa13.08□□□□□ -0.32
MCF2L-231ENST00000494043 ATP2A1O14983 1001 aa13.08□□□□□ -0.32
MCF2L-231ENST00000494043 HERVK_113P62684 666 aa13.08□□□□□ -0.32
MCF2L-231ENST00000494043 TMEM132BQ14DG7 1078 aa13.08□□□□□ -0.32
MCF2L-231ENST00000494043 FOXD4L6Q3SYB3 417 aaPredicted RBP13.08□□□□□ -0.32
MCF2L-231ENST00000494043 FOXD4L3Q6VB84 417 aaPredicted RBP13.08□□□□□ -0.32
MCF2L-231ENST00000494043 CPXCR1Q8N123 301 aa13.08□□□□□ -0.32
MCF2L-231ENST00000494043 MB21D1Q8N884 522 aa13.08□□□□□ -0.32
MCF2L-231ENST00000494043 CUL5Q93034 780 aa13.08□□□□□ -0.32
MCF2L-231ENST00000494043 CCDC102AQ96A19 550 aa13.08□□□□□ -0.32
MCF2L-231ENST00000494043 P2RX7Q99572 595 aaKnown RBP13.08□□□□□ -0.32
MCF2L-231ENST00000494043 PSTPIP2Q9H939 334 aa13.08□□□□□ -0.32
MCF2L-231ENST00000494043 PNMA3Q9UL41 463 aa13.08□□□□□ -0.32
MCF2L-231ENST00000494043 ZNF214Q9UL59 606 aaPredicted RBP13.08□□□□□ -0.32
MCF2L-231ENST00000494043 MRPL11Q9Y3B7 192 aaKnown RBP13.08□□□□□ -0.32
MCF2L-231ENST00000494043 MANSC4A6NHS7 340 aaPredicted RBP13.07□□□□□ -0.32
MCF2L-231ENST00000494043 PDHXO00330 501 aa13.07□□□□□ -0.32
MCF2L-231ENST00000494043 OPLAHO14841 1288 aa13.07□□□□□ -0.32
MCF2L-231ENST00000494043 BAG4O95429 457 aaKnown RBP13.07□□□□□ -0.32
MCF2L-231ENST00000494043 APLP1P51693 650 aa13.07□□□□□ -0.32
MCF2L-231ENST00000494043 MRPL12P52815 198 aaKnown RBP13.07□□□□□ -0.32
MCF2L-231ENST00000494043 MYSM1Q5VVJ2 828 aa13.07□□□□□ -0.32
MCF2L-231ENST00000494043 FAM173BQ6P4H8 233 aa13.07□□□□□ -0.32
MCF2L-231ENST00000494043 POTEEQ6S8J3 1075 aa13.07□□□□□ -0.32
MCF2L-231ENST00000494043 TEX2Q8IWB9 1127 aa13.07□□□□□ -0.32
MCF2L-231ENST00000494043 REXO1Q8N1G1 1221 aaKnown RBP13.07□□□□□ -0.32
MCF2L-231ENST00000494043 RASGRP4Q8TDF6 673 aa13.07□□□□□ -0.32
MCF2L-231ENST00000494043 GTF3C2Q8WUA4 911 aaPredicted RBP13.07□□□□□ -0.32
MCF2L-231ENST00000494043 TEX13BQ9BXU2 312 aa13.07□□□□□ -0.32
MCF2L-231ENST00000494043 CREBZFQ9NS37 354 aa13.07□□□□□ -0.32
MCF2L-231ENST00000494043 PCDHA6Q9UN73 950 aa13.07□□□□□ -0.32
MCF2L-231ENST00000494043 PCDHA8Q9Y5H6 950 aa13.07□□□□□ -0.32
MCF2L-231ENST00000494043 ALAS1P13196 640 aa13.06□□□□□ -0.32
MCF2L-231ENST00000494043 CLK2P49760 499 aaKnown RBP13.06□□□□□ -0.32
MCF2L-231ENST00000494043 DNM1Q05193 864 aaKnown RBP13.06□□□□□ -0.32
MCF2L-231ENST00000494043 UBE2SQ16763 222 aa13.06□□□□□ -0.32
MCF2L-231ENST00000494043 NOM1Q5C9Z4 860 aaKnown RBP13.06□□□□□ -0.32
MCF2L-231ENST00000494043 EARS2Q5JPH6 523 aaKnown RBP13.06□□□□□ -0.32
MCF2L-231ENST00000494043 SNRNP48Q6IEG0 339 aaKnown RBP13.06□□□□□ -0.32
MCF2L-231ENST00000494043 KRT25Q7Z3Z0 450 aa13.06□□□□□ -0.32
MCF2L-231ENST00000494043 FAM43AQ8N2R8 423 aa13.06□□□□□ -0.32
MCF2L-231ENST00000494043 CHAMP1Q96JM3 812 aa13.06□□□□□ -0.32
MCF2L-231ENST00000494043 GBP4Q96PP9 640 aa13.06□□□□□ -0.32
MCF2L-231ENST00000494043 PTPN18Q99952 460 aa13.06□□□□□ -0.32
MCF2L-231ENST00000494043 COL11A1P12107 1806 aaPredicted RBP13.06□□□□□ -0.32
MCF2L-231ENST00000494043 CCDC194A0A1B0GVG4 234 aa13.05□□□□□ -0.32
MCF2L-231ENST00000494043 FAM205CA6NFA0 338 aa13.05□□□□□ -0.32
MCF2L-231ENST00000494043 RASSF10A6NK89 507 aa13.05□□□□□ -0.32
MCF2L-231ENST00000494043 PIK3CDO00329 1044 aa13.05□□□□□ -0.32
MCF2L-231ENST00000494043 MEIS2O14770 477 aa13.05□□□□□ -0.32
MCF2L-231ENST00000494043 CNMDO75829 334 aa13.05□□□□□ -0.32
MCF2L-231ENST00000494043 STAT3P40763 770 aa13.05□□□□□ -0.32
MCF2L-231ENST00000494043 TKFCQ3LXA3 575 aa13.05□□□□□ -0.32
MCF2L-231ENST00000494043 ATL3Q6DD88 541 aa13.05□□□□□ -0.32
MCF2L-231ENST00000494043 USP17L6PQ6QN14 398 aa13.05□□□□□ -0.32
MCF2L-231ENST00000494043 PIK3AP1Q6ZUJ8 805 aa13.05□□□□□ -0.32
MCF2L-231ENST00000494043 CLEC4DQ8WXI8 215 aa13.05□□□□□ -0.32
MCF2L-231ENST00000494043 ZNF396Q96N95 335 aaPredicted RBP13.05□□□□□ -0.32
MCF2L-231ENST00000494043 PARK7Q99497 189 aaKnown RBP13.05□□□□□ -0.32
MCF2L-231ENST00000494043 ZCCHC17Q9NP64 241 aaKnown RBP13.05□□□□□ -0.32
MCF2L-231ENST00000494043 RNF146Q9NTX7 359 aa13.05□□□□□ -0.32
MCF2L-231ENST00000494043 TMEM260Q9NX78 707 aa13.05□□□□□ -0.32
MCF2L-231ENST00000494043 BTBD7Q9P203 1132 aa13.05□□□□□ -0.32
MCF2L-231ENST00000494043 BIN2Q9UBW5 565 aaPredicted RBP13.05□□□□□ -0.32
MCF2L-231ENST00000494043 RABGAP1Q9Y3P9 1069 aa13.05□□□□□ -0.32
MCF2L-231ENST00000494043 MYH15Q9Y2K3 1946 aa13.05□□□□□ -0.32
MCF2L-231ENST00000494043 IGF2BP3O00425 579 aaKnown RBP eCLIP13.04□□□□□ -0.32
MCF2L-231ENST00000494043 NFIBO00712 420 aa13.04□□□□□ -0.32
MCF2L-231ENST00000494043 CYP2C8P10632 490 aa13.04□□□□□ -0.32
MCF2L-231ENST00000494043 INHBEP58166 350 aa13.04□□□□□ -0.32
MCF2L-231ENST00000494043 KRT85P78386 507 aa13.04□□□□□ -0.32
MCF2L-231ENST00000494043 GHRHRQ02643 423 aa13.04□□□□□ -0.32
MCF2L-231ENST00000494043 SREBF2Q12772 1141 aa13.04□□□□□ -0.32
MCF2L-231ENST00000494043 AP3B2Q13367 1082 aa13.04□□□□□ -0.32
MCF2L-231ENST00000494043 PLS1Q14651 629 aa13.04□□□□□ -0.32
MCF2L-231ENST00000494043 NONOQ15233 471 aaKnown RBP eCLIP13.04□□□□□ -0.32
MCF2L-231ENST00000494043 RILPL1Q5EBL4 403 aa13.04□□□□□ -0.32
MCF2L-231ENST00000494043 MUM1L1Q5H9M0 696 aa13.04□□□□□ -0.32
MCF2L-231ENST00000494043 JAKMIP3Q5VZ66 844 aa13.04□□□□□ -0.32
MCF2L-231ENST00000494043 MCTP2Q6DN12 878 aa13.04□□□□□ -0.32
MCF2L-231ENST00000494043 CYP4F22Q6NT55 531 aa13.04□□□□□ -0.32
MCF2L-231ENST00000494043 PAXIP1Q6ZW49 1069 aaPredicted RBP13.04□□□□□ -0.32
MCF2L-231ENST00000494043 MCF2L2Q86YR7 1114 aa13.04□□□□□ -0.32
MCF2L-231ENST00000494043 RIOX2Q8IUF8 465 aa13.04□□□□□ -0.32
MCF2L-231ENST00000494043 SMCR8Q8TEV9 937 aaPredicted RBP13.04□□□□□ -0.32
MCF2L-231ENST00000494043 TRERF1Q96PN7 1200 aa13.04□□□□□ -0.32
MCF2L-231ENST00000494043 USP28Q96RU2 1077 aa13.04□□□□□ -0.32
MCF2L-231ENST00000494043 PAGR1Q9BTK6 254 aa13.04□□□□□ -0.32
MCF2L-231ENST00000494043 SPATC1LQ9H0A9 340 aa13.04□□□□□ -0.32
MCF2L-231ENST00000494043 HOMER2Q9NSB8 354 aa13.04□□□□□ -0.32
MCF2L-231ENST00000494043 RBPJLQ9UBG7 517 aa13.04□□□□□ -0.32
MCF2L-231ENST00000494043 NOL7Q9UMY1 257 aaKnown RBP13.04□□□□□ -0.32
MCF2L-231ENST00000494043 CNPY2Q9Y2B0 182 aa13.04□□□□□ -0.32
MCF2L-231ENST00000494043 RIPK3Q9Y572 518 aa13.04□□□□□ -0.32
MCF2L-231ENST00000494043 RBBP6Q7Z6E9 1792 aaKnown RBP13.03□□□□□ -0.32
MCF2L-231ENST00000494043 GCOM1H8Y6P7 765 aaPredicted RBP13.03□□□□□ -0.32
MCF2L-231ENST00000494043 CFBP00751 764 aa13.03□□□□□ -0.32
MCF2L-231ENST00000494043 POLR2MP0CAP2 368 aa13.03□□□□□ -0.32
MCF2L-231ENST00000494043 NCLP19338 710 aaKnown RBP13.03□□□□□ -0.32
MCF2L-231ENST00000494043 HOXA13P31271 388 aaPredicted RBP13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms