RNA–Protein interactions for RNA: ENST00000493601.5

PTPRU-208, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 5

Gene PTPRU, Length 695 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-208ENST00000493601 UNC80Q8N2C7 3258 aa19.59■□□□□ 0.73
PTPRU-208ENST00000493601 SOWAHBA6NEL2 793 aa19.59■□□□□ 0.73
PTPRU-208ENST00000493601 SMAD3P84022 425 aaKnown RBP19.59■□□□□ 0.73
PTPRU-208ENST00000493601 TNFAIP2Q03169 654 aa19.59■□□□□ 0.73
PTPRU-208ENST00000493601 FPGSQ05932 587 aa19.59■□□□□ 0.73
PTPRU-208ENST00000493601 MUM1L1Q5H9M0 696 aa19.59■□□□□ 0.73
PTPRU-208ENST00000493601 GNASQ5JWF2 1037 aa19.59■□□□□ 0.73
PTPRU-208ENST00000493601 NOL8Q76FK4 1167 aaKnown RBP19.59■□□□□ 0.73
PTPRU-208ENST00000493601 RANBP17Q9H2T7 1088 aaKnown RBP19.59■□□□□ 0.73
PTPRU-208ENST00000493601 A0A0U1RQG5 324 aaPredicted RBP19.58■□□□□ 0.72
PTPRU-208ENST00000493601 HAND2P61296 217 aa19.58■□□□□ 0.72
PTPRU-208ENST00000493601 NKX3-2P78367 333 aa19.58■□□□□ 0.72
PTPRU-208ENST00000493601 AKNAD1Q5T1N1 836 aa19.58■□□□□ 0.72
PTPRU-208ENST00000493601 SYDE2Q5VT97 1194 aa19.58■□□□□ 0.72
PTPRU-208ENST00000493601 B4GALNT3Q6L9W6 998 aa19.58■□□□□ 0.72
PTPRU-208ENST00000493601 BTNL9Q6UXG8 535 aa19.58■□□□□ 0.72
PTPRU-208ENST00000493601 NSMFQ6X4W1 530 aa19.58■□□□□ 0.72
PTPRU-208ENST00000493601 MFSD6Q6ZSS7 791 aa19.58■□□□□ 0.72
PTPRU-208ENST00000493601 CHD1LQ86WJ1 897 aa19.58■□□□□ 0.72
PTPRU-208ENST00000493601 VTI1AQ96AJ9 217 aa19.58■□□□□ 0.72
PTPRU-208ENST00000493601 RNPC3Q96LT9 517 aaKnown RBP19.58■□□□□ 0.72
PTPRU-208ENST00000493601 YTHDC1Q96MU7 727 aaKnown RBP19.58■□□□□ 0.72
PTPRU-208ENST00000493601 GUCD1Q96NT3 240 aa19.58■□□□□ 0.72
PTPRU-208ENST00000493601 TMEM47Q9BQJ4 181 aa19.58■□□□□ 0.72
PTPRU-208ENST00000493601 RNF41Q9H4P4 317 aaPredicted RBP19.58■□□□□ 0.72
PTPRU-208ENST00000493601 ASTN1O14525 1302 aa19.57■□□□□ 0.72
PTPRU-208ENST00000493601 SLC16A2P36021 539 aa19.57■□□□□ 0.72
PTPRU-208ENST00000493601 IRX5P78411 483 aaPredicted RBP19.57■□□□□ 0.72
PTPRU-208ENST00000493601 TLK2Q86UE8 772 aa19.57■□□□□ 0.72
PTPRU-208ENST00000493601 TBX21Q9UL17 535 aa19.57■□□□□ 0.72
PTPRU-208ENST00000493601 PNMA2Q9UL42 364 aa19.57■□□□□ 0.72
PTPRU-208ENST00000493601 FRMPD2Q68DX3 1309 aaPredicted RBP19.56■□□□□ 0.72
PTPRU-208ENST00000493601 EYSQ5T1H1 3165 aa19.56■□□□□ 0.72
PTPRU-208ENST00000493601 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.56■□□□□ 0.72
PTPRU-208ENST00000493601 ARVCFO00192 962 aa19.56■□□□□ 0.72
PTPRU-208ENST00000493601 CTAGE5O15320 804 aa19.56■□□□□ 0.72
PTPRU-208ENST00000493601 TIMP1P01033 207 aa19.56■□□□□ 0.72
PTPRU-208ENST00000493601 PDHBP11177 359 aa19.56■□□□□ 0.72
PTPRU-208ENST00000493601 CDK7P50613 346 aa19.56■□□□□ 0.72
PTPRU-208ENST00000493601 NUCB1Q02818 461 aa19.56■□□□□ 0.72
PTPRU-208ENST00000493601 TTBK2Q6IQ55 1244 aa19.56■□□□□ 0.72
PTPRU-208ENST00000493601 TBC1D10CQ8IV04 446 aa19.56■□□□□ 0.72
PTPRU-208ENST00000493601 FAM161BQ96MY7 647 aa19.56■□□□□ 0.72
PTPRU-208ENST00000493601 TTC14Q96N46 770 aa19.56■□□□□ 0.72
PTPRU-208ENST00000493601 OSBPL3Q9H4L5 887 aa19.56■□□□□ 0.72
PTPRU-208ENST00000493601 GNEQ9Y223 722 aaKnown RBP19.56■□□□□ 0.72
PTPRU-208ENST00000493601 TLR3O15455 904 aaKnown RBP19.55■□□□□ 0.72
PTPRU-208ENST00000493601 SDSP20132 328 aa19.55■□□□□ 0.72
PTPRU-208ENST00000493601 EPHB4P54760 987 aa19.55■□□□□ 0.72
PTPRU-208ENST00000493601 FSCN1Q16658 493 aaKnown RBP19.55■□□□□ 0.72
PTPRU-208ENST00000493601 PLEKHM2Q8IWE5 1019 aa19.55■□□□□ 0.72
PTPRU-208ENST00000493601 FBXO16Q8IX29 292 aaPredicted RBP19.55■□□□□ 0.72
PTPRU-208ENST00000493601 ESR2Q92731 530 aa19.55■□□□□ 0.72
PTPRU-208ENST00000493601 AP5M1Q9H0R1 490 aa19.55■□□□□ 0.72
PTPRU-208ENST00000493601 CDH23Q9H251 3354 aa19.55■□□□□ 0.72
PTPRU-208ENST00000493601 VTA1Q9NP79 307 aa19.55■□□□□ 0.72
PTPRU-208ENST00000493601 GPCPD1Q9NPB8 672 aa19.55■□□□□ 0.72
PTPRU-208ENST00000493601 ADD3Q9UEY8 706 aaKnown RBP19.55■□□□□ 0.72
PTPRU-208ENST00000493601 LOC102724159A0A0B4J2E5 919 aa19.54■□□□□ 0.72
PTPRU-208ENST00000493601 ZEB2O60315 1214 aa19.54■□□□□ 0.72
PTPRU-208ENST00000493601 CABYRO75952 493 aa19.54■□□□□ 0.72
PTPRU-208ENST00000493601 NT5C2P49902 561 aa19.54■□□□□ 0.72
PTPRU-208ENST00000493601 BEX3Q00994 111 aa19.54■□□□□ 0.72
PTPRU-208ENST00000493601 ZNF543Q08ER8 600 aa19.54■□□□□ 0.72
PTPRU-208ENST00000493601 PWP2Q15269 919 aaKnown RBP19.54■□□□□ 0.72
PTPRU-208ENST00000493601 IQSEC1Q6DN90 963 aa19.54■□□□□ 0.72
PTPRU-208ENST00000493601 FAM126BQ8IXS8 530 aa19.54■□□□□ 0.72
PTPRU-208ENST00000493601 MORC4Q8TE76 937 aa19.54■□□□□ 0.72
PTPRU-208ENST00000493601 DIAPH3Q9NSV4 1193 aa19.54■□□□□ 0.72
PTPRU-208ENST00000493601 NEDD4P46934 1319 aa19.53■□□□□ 0.72
PTPRU-208ENST00000493601 PTPDC1A2A3K4 754 aa19.53■□□□□ 0.72
PTPRU-208ENST00000493601 HIP1O00291 1037 aa19.53■□□□□ 0.72
PTPRU-208ENST00000493601 DLL1O00548 723 aa19.53■□□□□ 0.72
PTPRU-208ENST00000493601 NFIBO00712 420 aa19.53■□□□□ 0.72
PTPRU-208ENST00000493601 SMPD1P17405 629 aa19.53■□□□□ 0.72
PTPRU-208ENST00000493601 BAATQ14032 418 aaPredicted RBP19.53■□□□□ 0.72
PTPRU-208ENST00000493601 MFSD5Q6N075 450 aa19.53■□□□□ 0.72
PTPRU-208ENST00000493601 EEPD1Q7L9B9 569 aa19.53■□□□□ 0.72
PTPRU-208ENST00000493601 Q9Y3F1 56 aa19.53■□□□□ 0.72
PTPRU-208ENST00000493601 DDX49Q9Y6V7 483 aaKnown RBP19.53■□□□□ 0.72
PTPRU-208ENST00000493601 TMEM265A0A087WTH1 108 aa19.52■□□□□ 0.72
PTPRU-208ENST00000493601 ZNF213O14771 459 aa19.52■□□□□ 0.72
PTPRU-208ENST00000493601 SNHG28P0DPA3 235 aa19.52■□□□□ 0.72
PTPRU-208ENST00000493601 ALDH5A1P51649 535 aaPredicted RBP19.52■□□□□ 0.72
PTPRU-208ENST00000493601 PPIGQ13427 754 aaKnown RBP eCLIP19.52■□□□□ 0.722e-7■■□□□ 11.8
PTPRU-208ENST00000493601 TAPT1Q6NXT6 567 aa19.52■□□□□ 0.72
PTPRU-208ENST00000493601 CWC27Q6UX04 472 aaKnown RBP19.52■□□□□ 0.72
PTPRU-208ENST00000493601 CXCL17Q6UXB2 119 aa19.52■□□□□ 0.72
PTPRU-208ENST00000493601 SEZ6LQ9BYH1 1024 aa19.52■□□□□ 0.72
PTPRU-208ENST00000493601 SEMA6BQ9H3T3 888 aa19.52■□□□□ 0.72
PTPRU-208ENST00000493601 PDGFCQ9NRA1 345 aa19.52■□□□□ 0.72
PTPRU-208ENST00000493601 WDR19Q8NEZ3 1342 aa19.51■□□□□ 0.71
PTPRU-208ENST00000493601 DYNC1LI2O43237 492 aaPredicted RBP19.51■□□□□ 0.71
PTPRU-208ENST00000493601 IGHDP01880 384 aa19.51■□□□□ 0.71
PTPRU-208ENST00000493601 CCDC178Q5BJE1 867 aa19.51■□□□□ 0.71
PTPRU-208ENST00000493601 GPATCH4Q5T3I0 446 aaKnown RBP19.51■□□□□ 0.71
PTPRU-208ENST00000493601 IQCA1Q86XH1 822 aa19.51■□□□□ 0.71
PTPRU-208ENST00000493601 TMEM199Q8N511 208 aa19.51■□□□□ 0.71
PTPRU-208ENST00000493601 PURBQ96QR8 312 aaKnown RBP19.51■□□□□ 0.71
PTPRU-208ENST00000493601 MPHOSPH6Q99547 160 aaKnown RBP19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms