RNA–Protein interactions for RNA: ENST00000492170.1

MRPL55-231, Transcript of mitochondrial ribosomal protein L55, human

TSL 5

Gene MRPL55, Length 241 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MRPL55-231	ENST00000492170	TBX21	Q9UL17	535 aa		18.09	■□□□□ 0.49
MRPL55-231	ENST00000492170	CCDC171	Q6TFL3	1326 aa		18.08	■□□□□ 0.49
MRPL55-231	ENST00000492170	ARVCF	O00192	962 aa		18.08	■□□□□ 0.48
MRPL55-231	ENST00000492170	TIMP1	P01033	207 aa		18.08	■□□□□ 0.48
MRPL55-231	ENST00000492170	ICAM1	P05362	532 aa		18.08	■□□□□ 0.48
MRPL55-231	ENST00000492170	HSPD1	P10809	573 aa	Known RBP	18.08	■□□□□ 0.48
MRPL55-231	ENST00000492170	CDK7	P50613	346 aa		18.08	■□□□□ 0.48
MRPL55-231	ENST00000492170	EPHB4	P54760	987 aa		18.08	■□□□□ 0.48
MRPL55-231	ENST00000492170	NKX3-2	P78367	333 aa		18.08	■□□□□ 0.48
MRPL55-231	ENST00000492170	NMI	Q13287	307 aa	Predicted RBP	18.08	■□□□□ 0.48
MRPL55-231	ENST00000492170	MUM1L1	Q5H9M0	696 aa		18.08	■□□□□ 0.48
MRPL55-231	ENST00000492170	SYDE2	Q5VT97	1194 aa		18.08	■□□□□ 0.48
MRPL55-231	ENST00000492170	NSMF	Q6X4W1	530 aa		18.08	■□□□□ 0.48
MRPL55-231	ENST00000492170	TLK2	Q86UE8	772 aa		18.08	■□□□□ 0.48
MRPL55-231	ENST00000492170	ZNF589	Q86UQ0	364 aa	Predicted RBP	18.08	■□□□□ 0.48
MRPL55-231	ENST00000492170	RANBP17	Q9H2T7	1088 aa	Known RBP	18.08	■□□□□ 0.48
MRPL55-231	ENST00000492170	TCP11L1	Q9NUJ3	509 aa		18.08	■□□□□ 0.48
MRPL55-231	ENST00000492170	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	18.07	■□□□□ 0.48
MRPL55-231	ENST00000492170	TLR3	O15455	904 aa	Known RBP	18.07	■□□□□ 0.48
MRPL55-231	ENST00000492170	PC	P11498	1178 aa	Known RBP	18.07	■□□□□ 0.48
MRPL55-231	ENST00000492170	MFAP1	P55081	439 aa	Known RBP	18.07	■□□□□ 0.48
MRPL55-231	ENST00000492170	BTNL9	Q6UXG8	535 aa		18.07	■□□□□ 0.48
MRPL55-231	ENST00000492170	RILPL2	Q969X0	211 aa		18.07	■□□□□ 0.48
MRPL55-231	ENST00000492170	TMEM47	Q9BQJ4	181 aa		18.07	■□□□□ 0.48
MRPL55-231	ENST00000492170	AP5M1	Q9H0R1	490 aa		18.07	■□□□□ 0.48
MRPL55-231	ENST00000492170	SEMA6B	Q9H3T3	888 aa		18.07	■□□□□ 0.48
MRPL55-231	ENST00000492170	GNE	Q9Y223	722 aa	Known RBP	18.07	■□□□□ 0.48
MRPL55-231	ENST00000492170	SUPT16H	Q9Y5B9	1047 aa	Known RBP	18.07	■□□□□ 0.48
MRPL55-231	ENST00000492170	LRRC37A2	A6NM11	1700 aa		18.06	■□□□□ 0.48
MRPL55-231	ENST00000492170	ASTN1	O14525	1302 aa		18.06	■□□□□ 0.48
MRPL55-231	ENST00000492170	FRMPD2	Q68DX3	1309 aa	Predicted RBP	18.06	■□□□□ 0.48
MRPL55-231	ENST00000492170	CTAGE5	O15320	804 aa		18.06	■□□□□ 0.48
MRPL55-231	ENST00000492170	ZEB2	O60315	1214 aa		18.06	■□□□□ 0.48
MRPL55-231	ENST00000492170	CABYR	O75952	493 aa		18.06	■□□□□ 0.48
MRPL55-231	ENST00000492170	SLC16A2	P36021	539 aa		18.06	■□□□□ 0.48
MRPL55-231	ENST00000492170	HAND2	P61296	217 aa		18.06	■□□□□ 0.48
MRPL55-231	ENST00000492170	BEX3	Q00994	111 aa		18.06	■□□□□ 0.48
MRPL55-231	ENST00000492170	PPIG	Q13427	754 aa	Known RBP eCLIP	18.06	■□□□□ 0.48	1e-6	■■■■□ 24.6
MRPL55-231	ENST00000492170	TTBK2	Q6IQ55	1244 aa		18.06	■□□□□ 0.48
MRPL55-231	ENST00000492170	MFSD5	Q6N075	450 aa		18.06	■□□□□ 0.48
MRPL55-231	ENST00000492170	FBXO16	Q8IX29	292 aa	Predicted RBP	18.06	■□□□□ 0.48
MRPL55-231	ENST00000492170	CDX2	Q99626	313 aa	Predicted RBP	18.06	■□□□□ 0.48
MRPL55-231	ENST00000492170	RWDD1	Q9H446	243 aa	Predicted RBP	18.06	■□□□□ 0.48
MRPL55-231	ENST00000492170	VTA1	Q9NP79	307 aa		18.06	■□□□□ 0.48
MRPL55-231	ENST00000492170	UNC80	Q8N2C7	3258 aa		18.06	■□□□□ 0.48
MRPL55-231	ENST00000492170	TMEM265	A0A087WTH1	108 aa		18.05	■□□□□ 0.48
MRPL55-231	ENST00000492170	FSCN1	Q16658	493 aa	Known RBP	18.05	■□□□□ 0.48
MRPL55-231	ENST00000492170	AKNAD1	Q5T1N1	836 aa		18.05	■□□□□ 0.48
MRPL55-231	ENST00000492170	IQSEC1	Q6DN90	963 aa		18.05	■□□□□ 0.48
MRPL55-231	ENST00000492170	MFSD6	Q6ZSS7	791 aa		18.05	■□□□□ 0.48
MRPL55-231	ENST00000492170	EEPD1	Q7L9B9	569 aa		18.05	■□□□□ 0.48
MRPL55-231	ENST00000492170	FAM126B	Q8IXS8	530 aa		18.05	■□□□□ 0.48
MRPL55-231	ENST00000492170	RNF41	Q9H4P4	317 aa	Predicted RBP	18.05	■□□□□ 0.48
MRPL55-231	ENST00000492170	GPCPD1	Q9NPB8	672 aa		18.05	■□□□□ 0.48
MRPL55-231	ENST00000492170	ADD3	Q9UEY8	706 aa	Known RBP	18.05	■□□□□ 0.48
MRPL55-231	ENST00000492170	PNMA2	Q9UL42	364 aa		18.05	■□□□□ 0.48
MRPL55-231	ENST00000492170	DYNC1LI2	O43237	492 aa	Predicted RBP	18.04	■□□□□ 0.48
MRPL55-231	ENST00000492170	PDHB	P11177	359 aa		18.04	■□□□□ 0.48
MRPL55-231	ENST00000492170	SMPD1	P17405	629 aa		18.04	■□□□□ 0.48
MRPL55-231	ENST00000492170	CXCL17	Q6UXB2	119 aa		18.04	■□□□□ 0.48
MRPL55-231	ENST00000492170	SMC5	Q8IY18	1101 aa		18.04	■□□□□ 0.48
MRPL55-231	ENST00000492170	TMEM199	Q8N511	208 aa		18.04	■□□□□ 0.48
MRPL55-231	ENST00000492170	TTC14	Q96N46	770 aa		18.04	■□□□□ 0.48
MRPL55-231	ENST00000492170	TTYH1	Q9H313	450 aa	Predicted RBP	18.04	■□□□□ 0.48
MRPL55-231	ENST00000492170	PDGFC	Q9NRA1	345 aa		18.04	■□□□□ 0.48
MRPL55-231	ENST00000492170		Q9Y3F1	56 aa		18.04	■□□□□ 0.48
MRPL55-231	ENST00000492170	DDX49	Q9Y6V7	483 aa	Known RBP	18.04	■□□□□ 0.48
MRPL55-231	ENST00000492170	LOC102724159	A0A0B4J2E5	919 aa		18.03	■□□□□ 0.48
MRPL55-231	ENST00000492170	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	18.03	■□□□□ 0.48
MRPL55-231	ENST00000492170	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	18.03	■□□□□ 0.48
MRPL55-231	ENST00000492170	NFIB	O00712	420 aa		18.03	■□□□□ 0.48
MRPL55-231	ENST00000492170	SDS	P20132	328 aa		18.03	■□□□□ 0.48
MRPL55-231	ENST00000492170	ALDH5A1	P51649	535 aa	Predicted RBP	18.03	■□□□□ 0.48
MRPL55-231	ENST00000492170	BAAT	Q14032	418 aa	Predicted RBP	18.03	■□□□□ 0.48
MRPL55-231	ENST00000492170	PWP2	Q15269	919 aa	Known RBP	18.03	■□□□□ 0.48
MRPL55-231	ENST00000492170	B4GALNT3	Q6L9W6	998 aa		18.03	■□□□□ 0.48
MRPL55-231	ENST00000492170	TAPT1	Q6NXT6	567 aa		18.03	■□□□□ 0.48
MRPL55-231	ENST00000492170	TBC1D10C	Q8IV04	446 aa		18.03	■□□□□ 0.48
MRPL55-231	ENST00000492170	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	18.03	■□□□□ 0.48
MRPL55-231	ENST00000492170	MORC4	Q8TE76	937 aa		18.03	■□□□□ 0.48
MRPL55-231	ENST00000492170	ESR2	Q92731	530 aa		18.03	■□□□□ 0.48
MRPL55-231	ENST00000492170	SEZ6L	Q9BYH1	1024 aa		18.03	■□□□□ 0.48
MRPL55-231	ENST00000492170	PPP1R12C	Q9BZL4	782 aa		18.03	■□□□□ 0.48
MRPL55-231	ENST00000492170	EYS	Q5T1H1	3165 aa		18.02	■□□□□ 0.48
MRPL55-231	ENST00000492170	PTPDC1	A2A3K4	754 aa		18.02	■□□□□ 0.48
MRPL55-231	ENST00000492170	NT5C2	P49902	561 aa		18.02	■□□□□ 0.48
MRPL55-231	ENST00000492170	ZNF543	Q08ER8	600 aa		18.02	■□□□□ 0.48
MRPL55-231	ENST00000492170	ITGA7	Q13683	1181 aa		18.02	■□□□□ 0.48
MRPL55-231	ENST00000492170	KIAA1211	Q6ZU35	1233 aa		18.02	■□□□□ 0.48
MRPL55-231	ENST00000492170	CHD1L	Q86WJ1	897 aa		18.02	■□□□□ 0.48
MRPL55-231	ENST00000492170	SLC43A3	Q8NBI5	491 aa		18.02	■□□□□ 0.48
MRPL55-231	ENST00000492170	MYLIP	Q8WY64	445 aa		18.02	■□□□□ 0.48
MRPL55-231	ENST00000492170	PURB	Q96QR8	312 aa	Known RBP	18.02	■□□□□ 0.48
MRPL55-231	ENST00000492170	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	18.02	■□□□□ 0.48	2e-7	■■■□□ 15.4
MRPL55-231	ENST00000492170	WDR19	Q8NEZ3	1342 aa		18.01	■□□□□ 0.47
MRPL55-231	ENST00000492170	ZNF213	O14771	459 aa		18.01	■□□□□ 0.47
MRPL55-231	ENST00000492170	CD4	P01730	458 aa		18.01	■□□□□ 0.47
MRPL55-231	ENST00000492170	CSF2RA	P15509	400 aa		18.01	■□□□□ 0.47
MRPL55-231	ENST00000492170	DNAJB2	P25686	324 aa		18.01	■□□□□ 0.47
MRPL55-231	ENST00000492170	PSRC1	Q6PGN9	363 aa	Predicted RBP	18.01	■□□□□ 0.47

Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms