RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 BICRALQ6AI39 1079 aa7.68□□□□□ -1.18
SCN1A-206ENST00000491429 HHIPL2Q6UWX4 724 aa7.68□□□□□ -1.18
SCN1A-206ENST00000491429 FERMT3Q86UX7 667 aa7.68□□□□□ -1.18
SCN1A-206ENST00000491429 GGT7Q9UJ14 662 aa7.68□□□□□ -1.18
SCN1A-206ENST00000491429 TACR1P25103 407 aa7.67□□□□□ -1.18
SCN1A-206ENST00000491429 UBXN11Q5T124 520 aa7.67□□□□□ -1.18
SCN1A-206ENST00000491429 TDRD10Q5VZ19 366 aaKnown RBP7.67□□□□□ -1.18
SCN1A-206ENST00000491429 CCDC144CPQ8IYA2 1237 aa7.67□□□□□ -1.18
SCN1A-206ENST00000491429 ZNF526Q8TF50 670 aaPredicted RBP7.67□□□□□ -1.18
SCN1A-206ENST00000491429 PMF1-BGLAPU3KQ54 211 aa7.67□□□□□ -1.18
SCN1A-206ENST00000491429 FGF10O15520 208 aaPredicted RBP7.66□□□□□ -1.18
SCN1A-206ENST00000491429 MC3RP41968 323 aa7.66□□□□□ -1.18
SCN1A-206ENST00000491429 HTRA3P83110 453 aa7.66□□□□□ -1.18
SCN1A-206ENST00000491429 PRR5P85299 388 aa7.66□□□□□ -1.18
SCN1A-206ENST00000491429 PUM1Q14671 1186 aaKnown RBP eCLIP7.66□□□□□ -1.18
SCN1A-206ENST00000491429 CWF19L1Q69YN2 538 aaKnown RBP7.66□□□□□ -1.18
SCN1A-206ENST00000491429 SAPCD2Q86UD0 394 aa7.66□□□□□ -1.18
SCN1A-206ENST00000491429 PDLIM7Q9NR12 457 aa7.66□□□□□ -1.18
SCN1A-206ENST00000491429 USP40Q9NVE5 1235 aa7.66□□□□□ -1.18
SCN1A-206ENST00000491429 A0A1W2PQJ5 194 aa7.65□□□□□ -1.18
SCN1A-206ENST00000491429 F8W031 263 aaPredicted RBP7.65□□□□□ -1.18
SCN1A-206ENST00000491429 K7ESM1 405 aa7.65□□□□□ -1.18
SCN1A-206ENST00000491429 DLX2Q07687 328 aaPredicted RBP7.65□□□□□ -1.18
SCN1A-206ENST00000491429 DCAF15Q66K64 600 aa7.65□□□□□ -1.18
SCN1A-206ENST00000491429 PPFIBP1Q86W92 1011 aa7.65□□□□□ -1.18
SCN1A-206ENST00000491429 SLITRK4Q8IW52 837 aa7.65□□□□□ -1.18
SCN1A-206ENST00000491429 BRF1Q92994 677 aa7.65□□□□□ -1.18
SCN1A-206ENST00000491429 NKD1Q969G9 470 aa7.65□□□□□ -1.18
SCN1A-206ENST00000491429 DHRS1Q96LJ7 313 aa7.65□□□□□ -1.18
SCN1A-206ENST00000491429 SRRTQ9BXP5 876 aaKnown RBP7.65□□□□□ -1.18
SCN1A-206ENST00000491429 ZNF445P59923 1031 aa7.64□□□□□ -1.19
SCN1A-206ENST00000491429 KRTAP5-3Q6L8H2 238 aa7.64□□□□□ -1.19
SCN1A-206ENST00000491429 CYP2R1Q6VVX0 501 aa7.64□□□□□ -1.19
SCN1A-206ENST00000491429 HS2ST1Q7LGA3 356 aa7.64□□□□□ -1.19
SCN1A-206ENST00000491429 FAN1Q9Y2M0 1017 aa7.64□□□□□ -1.19
SCN1A-206ENST00000491429 DUSP10Q9Y6W6 482 aa7.64□□□□□ -1.19
SCN1A-206ENST00000491429 SH3D21A4FU49 640 aa7.63□□□□□ -1.19
SCN1A-206ENST00000491429 ASGR2P07307 311 aa7.63□□□□□ -1.19
SCN1A-206ENST00000491429 ITGAEP38570 1179 aa7.63□□□□□ -1.19
SCN1A-206ENST00000491429 PMS1P54277 932 aaKnown RBP7.63□□□□□ -1.19
SCN1A-206ENST00000491429 AXDND1Q5T1B0 1012 aaPredicted RBP7.63□□□□□ -1.19
SCN1A-206ENST00000491429 FCRL3Q96P31 734 aaPredicted RBP7.63□□□□□ -1.19
SCN1A-206ENST00000491429 GPR20Q99678 358 aa7.63□□□□□ -1.19
SCN1A-206ENST00000491429 NT5C1AQ9BXI3 368 aa7.63□□□□□ -1.19
SCN1A-206ENST00000491429 BCAS3Q9H6U6 928 aa7.63□□□□□ -1.19
SCN1A-206ENST00000491429 GP6Q9HCN6 339 aa7.63□□□□□ -1.19
SCN1A-206ENST00000491429 IFNGR1P15260 489 aa7.62□□□□□ -1.19
SCN1A-206ENST00000491429 NOL9Q5SY16 702 aaKnown RBP7.62□□□□□ -1.19
SCN1A-206ENST00000491429 INTS3Q68E01 1043 aaKnown RBP7.62□□□□□ -1.19
SCN1A-206ENST00000491429 DDX1Q92499 740 aaKnown RBP7.62□□□□□ -1.19
SCN1A-206ENST00000491429 PTCHD1Q96NR3 888 aa7.62□□□□□ -1.19
SCN1A-206ENST00000491429 RNF38Q9H0F5 515 aa7.62□□□□□ -1.19
SCN1A-206ENST00000491429 RXFP1Q9HBX9 757 aa7.62□□□□□ -1.19
SCN1A-206ENST00000491429 FAM86C1Q9NVL1 165 aa7.62□□□□□ -1.19
SCN1A-206ENST00000491429 DBR1Q9UK59 544 aaKnown RBP7.62□□□□□ -1.19
SCN1A-206ENST00000491429 FIBCD1Q8N539 461 aa7.61□□□□□ -1.19
SCN1A-206ENST00000491429 CNOT11Q9UKZ1 510 aaKnown RBP7.61□□□□□ -1.19
SCN1A-206ENST00000491429 MYRFQ9Y2G1 1151 aa7.61□□□□□ -1.19
SCN1A-206ENST00000491429 NOBOXO60393 691 aa7.6□□□□□ -1.19
SCN1A-206ENST00000491429 TP53P04637 393 aaPredicted RBP7.6□□□□□ -1.19
SCN1A-206ENST00000491429 NCAM1P13591 858 aa7.6□□□□□ -1.19
SCN1A-206ENST00000491429 CNR2P34972 360 aa7.6□□□□□ -1.19
SCN1A-206ENST00000491429 CORO7P57737 925 aa7.6□□□□□ -1.19
SCN1A-206ENST00000491429 ZNF827Q17R98 1081 aa7.6□□□□□ -1.19
SCN1A-206ENST00000491429 ANKRD39Q53RE8 183 aa7.6□□□□□ -1.19
SCN1A-206ENST00000491429 CARFQ8N187 725 aa7.6□□□□□ -1.19
SCN1A-206ENST00000491429 ALG3Q92685 438 aa7.6□□□□□ -1.19
SCN1A-206ENST00000491429 ZNRF3Q9ULT6 936 aa7.6□□□□□ -1.19
SCN1A-206ENST00000491429 ZNF451Q9Y4E5 1061 aa7.6□□□□□ -1.19
SCN1A-206ENST00000491429 FHOD1Q9Y613 1164 aa7.6□□□□□ -1.19
SCN1A-206ENST00000491429 CD3EP07766 207 aa7.59□□□□□ -1.19
SCN1A-206ENST00000491429 GLI4P10075 376 aa7.59□□□□□ -1.19
SCN1A-206ENST00000491429 CD247P20963 164 aa7.59□□□□□ -1.19
SCN1A-206ENST00000491429 PMLP29590 882 aa7.59□□□□□ -1.19
SCN1A-206ENST00000491429 L1CAMP32004 1257 aa7.59□□□□□ -1.19
SCN1A-206ENST00000491429 NOP2P46087 812 aaKnown RBP7.59□□□□□ -1.19
SCN1A-206ENST00000491429 ZYXQ15942 572 aaKnown RBP7.59□□□□□ -1.19
SCN1A-206ENST00000491429 B3GNT8Q7Z7M8 397 aa7.59□□□□□ -1.19
SCN1A-206ENST00000491429 FBLN5Q9UBX5 448 aa7.59□□□□□ -1.19
SCN1A-206ENST00000491429 MAGEA10P43363 369 aaPredicted RBP7.58□□□□□ -1.2
SCN1A-206ENST00000491429 USP48Q86UV5 1035 aa7.58□□□□□ -1.2
SCN1A-206ENST00000491429 KIAA0825Q8IV33 1275 aa7.58□□□□□ -1.2
SCN1A-206ENST00000491429 NLGN2Q8NFZ4 835 aa7.58□□□□□ -1.2
SCN1A-206ENST00000491429 SMARCC1Q92922 1105 aaPredicted RBP7.58□□□□□ -1.2
SCN1A-206ENST00000491429 ZDHHC15Q96MV8 337 aa7.58□□□□□ -1.2
SCN1A-206ENST00000491429 NOX5Q96PH1 765 aa7.58□□□□□ -1.2
SCN1A-206ENST00000491429 LNPKQ9C0E8 428 aa7.58□□□□□ -1.2
SCN1A-206ENST00000491429 NOL6Q9H6R4 1146 aaKnown RBP7.58□□□□□ -1.2
SCN1A-206ENST00000491429 PALD1Q9ULE6 856 aa7.58□□□□□ -1.2
SCN1A-206ENST00000491429 TBC1D8O95759 1140 aa7.57□□□□□ -1.2
SCN1A-206ENST00000491429 MRPL58Q14197 206 aaKnown RBP7.57□□□□□ -1.2
SCN1A-206ENST00000491429 TAB3Q8N5C8 712 aaPredicted RBP7.57□□□□□ -1.2
SCN1A-206ENST00000491429 SPON2Q9BUD6 331 aa7.57□□□□□ -1.2
SCN1A-206ENST00000491429 SF3B6Q9Y3B4 125 aaKnown RBP7.57□□□□□ -1.2
SCN1A-206ENST00000491429 GJA9P57773 515 aa7.56□□□□□ -1.2
SCN1A-206ENST00000491429 SMARCC2Q8TAQ2 1214 aa7.56□□□□□ -1.2
SCN1A-206ENST00000491429 MCMBPQ9BTE3 642 aa7.56□□□□□ -1.2
SCN1A-206ENST00000491429 ITGB3P05106 788 aa7.55□□□□□ -1.2
SCN1A-206ENST00000491429 ADAM17P78536 824 aa7.55□□□□□ -1.2
SCN1A-206ENST00000491429 UNC5AQ6ZN44 842 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms