RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 GLT1D1Q96MS3 346 aa16.08■□□□□ 0.16
COL6A3-211ENST00000491233 OSBPL3Q9H4L5 887 aa16.08■□□□□ 0.16
COL6A3-211ENST00000491233 GPCPD1Q9NPB8 672 aa16.08■□□□□ 0.16
COL6A3-211ENST00000491233 TCP11L1Q9NUJ3 509 aa16.08■□□□□ 0.16
COL6A3-211ENST00000491233 CYP39A1Q9NYL5 469 aa16.08■□□□□ 0.16
COL6A3-211ENST00000491233 DDX49Q9Y6V7 483 aaKnown RBP16.08■□□□□ 0.16
COL6A3-211ENST00000491233 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.07■□□□□ 0.16
COL6A3-211ENST00000491233 ASB14A6NK59 587 aa16.07■□□□□ 0.16
COL6A3-211ENST00000491233 ASGR1P07306 291 aa16.07■□□□□ 0.16
COL6A3-211ENST00000491233 PCP11498 1178 aaKnown RBP16.07■□□□□ 0.16
COL6A3-211ENST00000491233 RAG1P15918 1043 aa16.07■□□□□ 0.16
COL6A3-211ENST00000491233 MFAP1P55081 439 aaKnown RBP16.07■□□□□ 0.16
COL6A3-211ENST00000491233 BTNL9Q6UXG8 535 aa16.07■□□□□ 0.16
COL6A3-211ENST00000491233 MFSD6Q6ZSS7 791 aa16.07■□□□□ 0.16
COL6A3-211ENST00000491233 ANKRD33Q7Z3H0 272 aa16.07■□□□□ 0.16
COL6A3-211ENST00000491233 TOX2Q96NM4 488 aa16.07■□□□□ 0.16
COL6A3-211ENST00000491233 DIAPH3Q9NSV4 1193 aa16.07■□□□□ 0.16
COL6A3-211ENST00000491233 TMEM39AQ9NV64 488 aa16.07■□□□□ 0.16
COL6A3-211ENST00000491233 STXBP5LQ9Y2K9 1186 aa16.07■□□□□ 0.16
COL6A3-211ENST00000491233 NEDD4P46934 1319 aa16.07■□□□□ 0.16
COL6A3-211ENST00000491233 MYH6P13533 1939 aa16.06■□□□□ 0.16
COL6A3-211ENST00000491233 ELP1O95163 1332 aa16.06■□□□□ 0.16
COL6A3-211ENST00000491233 DCDC2CA8MYV0 355 aa16.06■□□□□ 0.16
COL6A3-211ENST00000491233 CTAGE5O15320 804 aa16.06■□□□□ 0.16
COL6A3-211ENST00000491233 PDHBP11177 359 aa16.06■□□□□ 0.16
COL6A3-211ENST00000491233 TNFAIP2Q03169 654 aa16.06■□□□□ 0.16
COL6A3-211ENST00000491233 FAAP100Q0VG06 881 aa16.06■□□□□ 0.16
COL6A3-211ENST00000491233 GNASQ5JWF2 1037 aa16.06■□□□□ 0.16
COL6A3-211ENST00000491233 NOL8Q76FK4 1167 aaKnown RBP16.06■□□□□ 0.16
COL6A3-211ENST00000491233 FBXO16Q8IX29 292 aaPredicted RBP16.06■□□□□ 0.16
COL6A3-211ENST00000491233 RNF41Q9H4P4 317 aaPredicted RBP16.06■□□□□ 0.16
COL6A3-211ENST00000491233 MROH7Q68CQ1 1323 aa16.05■□□□□ 0.16
COL6A3-211ENST00000491233 NFIBO00712 420 aa16.05■□□□□ 0.16
COL6A3-211ENST00000491233 EPHB4P54760 987 aa16.05■□□□□ 0.16
COL6A3-211ENST00000491233 BEX3Q00994 111 aa16.05■□□□□ 0.16
COL6A3-211ENST00000491233 FAM109BQ6ICB4 259 aaPredicted RBP16.05■□□□□ 0.16
COL6A3-211ENST00000491233 CWC27Q6UX04 472 aaKnown RBP16.05■□□□□ 0.16
COL6A3-211ENST00000491233 EEPD1Q7L9B9 569 aa16.05■□□□□ 0.16
COL6A3-211ENST00000491233 TLK2Q86UE8 772 aa16.05■□□□□ 0.16
COL6A3-211ENST00000491233 SLC17A8Q8NDX2 589 aa16.05■□□□□ 0.16
COL6A3-211ENST00000491233 PURBQ96QR8 312 aaKnown RBP16.05■□□□□ 0.16
COL6A3-211ENST00000491233 TBX21Q9UL17 535 aa16.05■□□□□ 0.16
COL6A3-211ENST00000491233 A0A0U1RQG5 324 aaPredicted RBP16.04■□□□□ 0.16
COL6A3-211ENST00000491233 PTGS1P23219 599 aa16.04■□□□□ 0.16
COL6A3-211ENST00000491233 NKX3-2P78367 333 aa16.04■□□□□ 0.16
COL6A3-211ENST00000491233 FPGSQ05932 587 aa16.04■□□□□ 0.16
COL6A3-211ENST00000491233 ZNF543Q08ER8 600 aa16.04■□□□□ 0.16
COL6A3-211ENST00000491233 ZNF697Q5TEC3 545 aa16.04■□□□□ 0.16
COL6A3-211ENST00000491233 SLC30A10Q6XR72 485 aa16.04■□□□□ 0.16
COL6A3-211ENST00000491233 ESR2Q92731 530 aa16.04■□□□□ 0.16
COL6A3-211ENST00000491233 VTI1AQ96AJ9 217 aa16.04■□□□□ 0.16
COL6A3-211ENST00000491233 RNPC3Q96LT9 517 aaKnown RBP16.04■□□□□ 0.16
COL6A3-211ENST00000491233 FAM161BQ96MY7 647 aa16.04■□□□□ 0.16
COL6A3-211ENST00000491233 TTC14Q96N46 770 aa16.04■□□□□ 0.16
COL6A3-211ENST00000491233 GUCD1Q96NT3 240 aa16.04■□□□□ 0.16
COL6A3-211ENST00000491233 ZKSCAN3Q9BRR0 538 aa16.04■□□□□ 0.16
COL6A3-211ENST00000491233 PDGFCQ9NRA1 345 aa16.04■□□□□ 0.16
COL6A3-211ENST00000491233 GNEQ9Y223 722 aaKnown RBP16.04■□□□□ 0.16
COL6A3-211ENST00000491233 ARVCFO00192 962 aa16.03■□□□□ 0.16
COL6A3-211ENST00000491233 ZNF213O14771 459 aa16.03■□□□□ 0.16
COL6A3-211ENST00000491233 SNHG28P0DPA3 235 aa16.03■□□□□ 0.16
COL6A3-211ENST00000491233 SMPD1P17405 629 aa16.03■□□□□ 0.16
COL6A3-211ENST00000491233 CDK7P50613 346 aa16.03■□□□□ 0.16
COL6A3-211ENST00000491233 ALDH5A1P51649 535 aaPredicted RBP16.03■□□□□ 0.16
COL6A3-211ENST00000491233 BAATQ14032 418 aaPredicted RBP16.03■□□□□ 0.16
COL6A3-211ENST00000491233 VTA1Q9NP79 307 aa16.03■□□□□ 0.16
COL6A3-211ENST00000491233 ADD3Q9UEY8 706 aaKnown RBP16.03■□□□□ 0.16
COL6A3-211ENST00000491233 WDR19Q8NEZ3 1342 aa16.02■□□□□ 0.16
COL6A3-211ENST00000491233 PTPDC1A2A3K4 754 aa16.02■□□□□ 0.16
COL6A3-211ENST00000491233 HIP1O00291 1037 aa16.02■□□□□ 0.16
COL6A3-211ENST00000491233 FSCN1Q16658 493 aaKnown RBP16.02■□□□□ 0.16
COL6A3-211ENST00000491233 TAPT1Q6NXT6 567 aa16.02■□□□□ 0.16
COL6A3-211ENST00000491233 CXCL17Q6UXB2 119 aa16.02■□□□□ 0.16
COL6A3-211ENST00000491233 FAM126BQ8IXS8 530 aa16.02■□□□□ 0.16
COL6A3-211ENST00000491233 MORC4Q8TE76 937 aa16.02■□□□□ 0.16
COL6A3-211ENST00000491233 CLEC4DQ8WXI8 215 aa16.02■□□□□ 0.16
COL6A3-211ENST00000491233 AP5M1Q9H0R1 490 aa16.02■□□□□ 0.16
COL6A3-211ENST00000491233 B4E1Z4 1266 aa16.01■□□□□ 0.15
COL6A3-211ENST00000491233 TLR3O15455 904 aaKnown RBP16.01■□□□□ 0.15
COL6A3-211ENST00000491233 DYNC1LI2O43237 492 aaPredicted RBP16.01■□□□□ 0.15
COL6A3-211ENST00000491233 KDM4AO75164 1064 aa16.01■□□□□ 0.15
COL6A3-211ENST00000491233 TIMP1P01033 207 aa16.01■□□□□ 0.15
COL6A3-211ENST00000491233 GOLGA8HP0CJ92 632 aa16.01■□□□□ 0.15
COL6A3-211ENST00000491233 SMAD3P84022 425 aaKnown RBP16.01■□□□□ 0.15
COL6A3-211ENST00000491233 TMEM63BQ5T3F8 832 aa16.01■□□□□ 0.15
COL6A3-211ENST00000491233 IQSEC1Q6DN90 963 aa16.01■□□□□ 0.15
COL6A3-211ENST00000491233 DSCC1Q9BVC3 393 aa16.01■□□□□ 0.15
COL6A3-211ENST00000491233 PPP1R12CQ9BZL4 782 aa16.01■□□□□ 0.15
COL6A3-211ENST00000491233 CPVLQ9H3G5 476 aa16.01■□□□□ 0.15
COL6A3-211ENST00000491233 PNMA2Q9UL42 364 aa16.01■□□□□ 0.15
COL6A3-211ENST00000491233 CALML3P27482 149 aa16■□□□□ 0.15
COL6A3-211ENST00000491233 NT5C2P49902 561 aa16■□□□□ 0.15
COL6A3-211ENST00000491233 GPATCH4Q5T3I0 446 aaKnown RBP16■□□□□ 0.15
COL6A3-211ENST00000491233 MFSD5Q6N075 450 aa16■□□□□ 0.15
COL6A3-211ENST00000491233 RNF207Q6ZRF8 634 aa16■□□□□ 0.15
COL6A3-211ENST00000491233 KIAA1211Q6ZU35 1233 aa16■□□□□ 0.15
COL6A3-211ENST00000491233 IQCA1Q86XH1 822 aa16■□□□□ 0.15
COL6A3-211ENST00000491233 DGKHQ86XP1 1220 aa16■□□□□ 0.15
COL6A3-211ENST00000491233 PNMA1Q8ND90 353 aa16■□□□□ 0.15
COL6A3-211ENST00000491233 COL6A3P12111 3177 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms