RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 NRDCO43847 1150 aa3.37□□□□□ -1.87
HMGB1-208ENST00000490788 FGRP09769 529 aa3.37□□□□□ -1.87
HMGB1-208ENST00000490788 DPY19L1Q2PZI1 675 aa3.37□□□□□ -1.87
HMGB1-208ENST00000490788 EEF1DP3Q658K8 133 aa3.37□□□□□ -1.87
HMGB1-208ENST00000490788 OLFML2BQ68BL8 750 aa3.37□□□□□ -1.87
HMGB1-208ENST00000490788 TMEM132EQ6IEE7 984 aa3.37□□□□□ -1.87
HMGB1-208ENST00000490788 C6orf15Q6UXA7 325 aaPredicted RBP3.37□□□□□ -1.87
HMGB1-208ENST00000490788 ZPBP2Q6X784 338 aa3.37□□□□□ -1.87
HMGB1-208ENST00000490788 ANKS3Q6ZW76 656 aa3.37□□□□□ -1.87
HMGB1-208ENST00000490788 EEPD1Q7L9B9 569 aa3.37□□□□□ -1.87
HMGB1-208ENST00000490788 SIRT2Q8IXJ6 389 aa3.37□□□□□ -1.87
HMGB1-208ENST00000490788 BVESQ8NE79 360 aa3.37□□□□□ -1.87
HMGB1-208ENST00000490788 LINC01599Q8WXQ3 324 aa3.37□□□□□ -1.87
HMGB1-208ENST00000490788 KLHL6Q8WZ60 621 aa3.37□□□□□ -1.87
HMGB1-208ENST00000490788 RCC1LQ96I51 464 aaKnown RBP3.37□□□□□ -1.87
HMGB1-208ENST00000490788 HHIPL1Q96JK4 782 aa3.37□□□□□ -1.87
HMGB1-208ENST00000490788 FAM84AQ96KN4 292 aa3.37□□□□□ -1.87
HMGB1-208ENST00000490788 RNF32Q9H0A6 362 aa3.37□□□□□ -1.87
HMGB1-208ENST00000490788 DCP1AQ9NPI6 582 aaPredicted RBP3.37□□□□□ -1.87
HMGB1-208ENST00000490788 CGGBP1Q9UFW8 167 aaPredicted RBP3.37□□□□□ -1.87
HMGB1-208ENST00000490788 GPR55Q9Y2T6 319 aaPredicted RBP3.37□□□□□ -1.87
HMGB1-208ENST00000490788 TRBV23OR9-2A0A075B6M9 112 aa3.36□□□□□ -1.87
HMGB1-208ENST00000490788 ZNF503-AS2A6NEH8 195 aa3.36□□□□□ -1.87
HMGB1-208ENST00000490788 C2orf71A6NGG8 1288 aa3.36□□□□□ -1.87
HMGB1-208ENST00000490788 STXBP3O00186 592 aa3.36□□□□□ -1.87
HMGB1-208ENST00000490788 VAMP4O75379 141 aa3.36□□□□□ -1.87
HMGB1-208ENST00000490788 KCNH1O95259 989 aa3.36□□□□□ -1.87
HMGB1-208ENST00000490788 BUD31P41223 144 aaPredicted RBP3.36□□□□□ -1.87
HMGB1-208ENST00000490788 CYP4F8P98187 520 aa3.36□□□□□ -1.87
HMGB1-208ENST00000490788 TMEM62Q0P6H9 643 aa3.36□□□□□ -1.87
HMGB1-208ENST00000490788 GRB10Q13322 594 aa3.36□□□□□ -1.87
HMGB1-208ENST00000490788 LAPTM5Q13571 262 aa3.36□□□□□ -1.87
HMGB1-208ENST00000490788 ADGRF1Q5T601 910 aa3.36□□□□□ -1.87
HMGB1-208ENST00000490788 IRF2BP1Q8IU81 584 aa3.36□□□□□ -1.87
HMGB1-208ENST00000490788 FBXO15Q8NCQ5 510 aaPredicted RBP3.36□□□□□ -1.87
HMGB1-208ENST00000490788 NUP43Q8NFH3 380 aa3.36□□□□□ -1.87
HMGB1-208ENST00000490788 HNRNPLLQ8WVV9 542 aaKnown RBP3.36□□□□□ -1.87
HMGB1-208ENST00000490788 INTS4Q96HW7 963 aaKnown RBP3.36□□□□□ -1.87
HMGB1-208ENST00000490788 PTCHD1Q96NR3 888 aa3.36□□□□□ -1.87
HMGB1-208ENST00000490788 PPP1R16BQ96T49 567 aa3.36□□□□□ -1.87
HMGB1-208ENST00000490788 GMLQ99445 158 aa3.36□□□□□ -1.87
HMGB1-208ENST00000490788 SLC12A9Q9BXP2 914 aa3.36□□□□□ -1.87
HMGB1-208ENST00000490788 CRTAC1Q9NQ79 661 aa3.36□□□□□ -1.87
HMGB1-208ENST00000490788 ST7Q9NRC1 585 aa3.36□□□□□ -1.87
HMGB1-208ENST00000490788 IGSF5Q9NSI5 407 aa3.36□□□□□ -1.87
HMGB1-208ENST00000490788 ERVK13-1Q9NX77 482 aa3.36□□□□□ -1.87
HMGB1-208ENST00000490788 YBX2Q9Y2T7 364 aaKnown RBP3.36□□□□□ -1.87
HMGB1-208ENST00000490788 BACE2Q9Y5Z0 518 aa3.36□□□□□ -1.87
HMGB1-208ENST00000490788 SCRIBQ14160 1630 aa3.35□□□□□ -1.87
HMGB1-208ENST00000490788 OR14I1A6ND48 311 aa3.35□□□□□ -1.87
HMGB1-208ENST00000490788 FADS2P1A8MWK0 482 aa3.35□□□□□ -1.87
HMGB1-208ENST00000490788 NFIBO00712 420 aa3.35□□□□□ -1.87
HMGB1-208ENST00000490788 AURKAO14965 403 aa3.35□□□□□ -1.87
HMGB1-208ENST00000490788 FGF10O15520 208 aaPredicted RBP3.35□□□□□ -1.87
HMGB1-208ENST00000490788 SUSD5O60279 629 aa3.35□□□□□ -1.87
HMGB1-208ENST00000490788 MPOP05164 745 aa3.35□□□□□ -1.87
HMGB1-208ENST00000490788 TMEM253P0C7T8 217 aa3.35□□□□□ -1.87
HMGB1-208ENST00000490788 IFNGR1P15260 489 aa3.35□□□□□ -1.87
HMGB1-208ENST00000490788 PRKCAP17252 672 aa3.35□□□□□ -1.87
HMGB1-208ENST00000490788 PAMP19021 973 aa3.35□□□□□ -1.87
HMGB1-208ENST00000490788 GTF2F1P35269 517 aaKnown RBP eCLIP3.35□□□□□ -1.87
HMGB1-208ENST00000490788 SF3A1Q15459 793 aaKnown RBP3.35□□□□□ -1.87
HMGB1-208ENST00000490788 HSF5Q4G112 596 aaPredicted RBP3.35□□□□□ -1.87
HMGB1-208ENST00000490788 RTP2Q5QGT7 225 aa3.35□□□□□ -1.87
HMGB1-208ENST00000490788 PRR23BQ6ZRT6 265 aa3.35□□□□□ -1.87
HMGB1-208ENST00000490788 NPM2Q86SE8 214 aaKnown RBP3.35□□□□□ -1.87
HMGB1-208ENST00000490788 ZNF605Q86T29 641 aa3.35□□□□□ -1.87
HMGB1-208ENST00000490788 CABP7Q86V35 215 aa3.35□□□□□ -1.87
HMGB1-208ENST00000490788 ARHGEF39Q8N4T4 335 aa3.35□□□□□ -1.87
HMGB1-208ENST00000490788 USP33Q8TEY7 942 aa3.35□□□□□ -1.87
HMGB1-208ENST00000490788 C8orf37Q96NL8 207 aa3.35□□□□□ -1.87
HMGB1-208ENST00000490788 FCRL3Q96P31 734 aaPredicted RBP3.35□□□□□ -1.87
HMGB1-208ENST00000490788 SLC26A8Q96RN1 970 aa3.35□□□□□ -1.87
HMGB1-208ENST00000490788 G6PC3Q9BUM1 346 aa3.35□□□□□ -1.87
HMGB1-208ENST00000490788 EPN3Q9H201 632 aa3.35□□□□□ -1.87
HMGB1-208ENST00000490788 ZNF281Q9Y2X9 895 aa3.35□□□□□ -1.87
HMGB1-208ENST00000490788 KIF21AQ7Z4S6 1674 aa3.34□□□□□ -1.87
HMGB1-208ENST00000490788 NPHP3-ACAD11A0A0J9YXS1 232 aa3.34□□□□□ -1.87
HMGB1-208ENST00000490788 IQCA1LA6NCM1 817 aa3.34□□□□□ -1.87
HMGB1-208ENST00000490788 B2RBV5 119 aa3.34□□□□□ -1.87
HMGB1-208ENST00000490788 ABLIM1O14639 778 aa3.34□□□□□ -1.87
HMGB1-208ENST00000490788 GJB6O95452 261 aa3.34□□□□□ -1.87
HMGB1-208ENST00000490788 PNLIPP16233 465 aa3.34□□□□□ -1.87
HMGB1-208ENST00000490788 L1CAMP32004 1257 aa3.34□□□□□ -1.87
HMGB1-208ENST00000490788 KCNJ6P48051 423 aa3.34□□□□□ -1.87
HMGB1-208ENST00000490788 GALK1P51570 392 aa3.34□□□□□ -1.87
HMGB1-208ENST00000490788 MESP2Q0VG99 397 aa3.34□□□□□ -1.87
HMGB1-208ENST00000490788 TIGD5Q53EQ6 642 aa3.34□□□□□ -1.87
HMGB1-208ENST00000490788 RCSD1Q6JBY9 416 aa3.34□□□□□ -1.87
HMGB1-208ENST00000490788 SYDE1Q6ZW31 735 aaPredicted RBP3.34□□□□□ -1.87
HMGB1-208ENST00000490788 NLRX1Q86UT6 975 aa3.34□□□□□ -1.87
HMGB1-208ENST00000490788 KCNN1Q92952 543 aa3.34□□□□□ -1.87
HMGB1-208ENST00000490788 HIRIP3Q9BW71 556 aaPredicted RBP3.34□□□□□ -1.87
HMGB1-208ENST00000490788 WDR26Q9H7D7 661 aa3.34□□□□□ -1.87
HMGB1-208ENST00000490788 SIRT5Q9NXA8 310 aa3.34□□□□□ -1.87
HMGB1-208ENST00000490788 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP3.34□□□□□ -1.87
HMGB1-208ENST00000490788 IMPACTQ9P2X3 320 aa3.34□□□□□ -1.87
HMGB1-208ENST00000490788 APEX2Q9UBZ4 518 aa3.34□□□□□ -1.87
HMGB1-208ENST00000490788 EBF1Q9UH73 591 aa3.34□□□□□ -1.87
HMGB1-208ENST00000490788 DBR1Q9UK59 544 aaKnown RBP3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms