RNA–Protein interactions for RNA: ENST00000489892.1

TRIM40-208, Transcript of tripartite motif containing 40, humanhuman

TSL 3

Gene TRIM40, Length 941 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-208ENST00000489892 PCDHA1Q9Y5I3 950 aa13.34□□□□□ -0.27
TRIM40-208ENST00000489892 TRIM75PA6NK02 468 aa13.33□□□□□ -0.28
TRIM40-208ENST00000489892 ESPNB1AK53 854 aa13.33□□□□□ -0.28
TRIM40-208ENST00000489892 PABPC4Q13310 644 aaKnown RBP eCLIP13.33□□□□□ -0.28
TRIM40-208ENST00000489892 PRKG1Q13976 671 aa13.33□□□□□ -0.28
TRIM40-208ENST00000489892 STK38Q15208 465 aa13.33□□□□□ -0.28
TRIM40-208ENST00000489892 SF3A1Q15459 793 aaKnown RBP13.33□□□□□ -0.28
TRIM40-208ENST00000489892 FOXD4L6Q3SYB3 417 aaPredicted RBP13.33□□□□□ -0.28
TRIM40-208ENST00000489892 FOXD4L3Q6VB84 417 aaPredicted RBP13.33□□□□□ -0.28
TRIM40-208ENST00000489892 RASGRP2Q7LDG7 609 aa13.33□□□□□ -0.28
TRIM40-208ENST00000489892 SAMD3Q8N6K7 520 aa13.33□□□□□ -0.28
TRIM40-208ENST00000489892 C2orf69Q8N8R5 385 aa13.33□□□□□ -0.28
TRIM40-208ENST00000489892 PROCA1Q8NCQ7 364 aaPredicted RBP13.33□□□□□ -0.28
TRIM40-208ENST00000489892 GPT2Q8TD30 523 aa13.33□□□□□ -0.28
TRIM40-208ENST00000489892 KIFC2Q96AC6 838 aa13.33□□□□□ -0.28
TRIM40-208ENST00000489892 NUP88Q99567 741 aaPredicted RBP13.33□□□□□ -0.28
TRIM40-208ENST00000489892 NAP1L4Q99733 375 aaKnown RBP13.33□□□□□ -0.28
TRIM40-208ENST00000489892 RANBP17Q9H2T7 1088 aaKnown RBP13.33□□□□□ -0.28
TRIM40-208ENST00000489892 RIC8AQ9NPQ8 531 aa13.33□□□□□ -0.28
TRIM40-208ENST00000489892 MORC2Q9Y6X9 1032 aaPredicted RBP13.33□□□□□ -0.28
TRIM40-208ENST00000489892 USP17L15C9J2P7 530 aa13.32□□□□□ -0.28
TRIM40-208ENST00000489892 USP17L13C9JLJ4 530 aa13.32□□□□□ -0.28
TRIM40-208ENST00000489892 USP17L11C9JVI0 530 aa13.32□□□□□ -0.28
TRIM40-208ENST00000489892 USP17L18D6R9N7 530 aa13.32□□□□□ -0.28
TRIM40-208ENST00000489892 USP17L22D6RA61 530 aa13.32□□□□□ -0.28
TRIM40-208ENST00000489892 USP17L17D6RBQ6 530 aa13.32□□□□□ -0.28
TRIM40-208ENST00000489892 USP17L19D6RCP7 530 aa13.32□□□□□ -0.28
TRIM40-208ENST00000489892 USP17L20D6RJB6 530 aa13.32□□□□□ -0.28
TRIM40-208ENST00000489892 UBE2Q2LH0YL09 131 aa13.32□□□□□ -0.28
TRIM40-208ENST00000489892 ZBED4O75132 1171 aa13.32□□□□□ -0.28
TRIM40-208ENST00000489892 FLOT1O75955 427 aa13.32□□□□□ -0.28
TRIM40-208ENST00000489892 OAZ1P54368 228 aa13.32□□□□□ -0.28
TRIM40-208ENST00000489892 SOX10P56693 466 aa13.32□□□□□ -0.28
TRIM40-208ENST00000489892 USP17L24Q0WX57 530 aa13.32□□□□□ -0.28
TRIM40-208ENST00000489892 AP3B2Q13367 1082 aa13.32□□□□□ -0.28
TRIM40-208ENST00000489892 HABP4Q5JVS0 413 aaKnown RBP13.32□□□□□ -0.28
TRIM40-208ENST00000489892 LDLRAD1Q5T700 205 aa13.32□□□□□ -0.28
TRIM40-208ENST00000489892 ANO1Q5XXA6 986 aa13.32□□□□□ -0.28
TRIM40-208ENST00000489892 FASTKD5Q7L8L6 764 aaKnown RBP13.32□□□□□ -0.28
TRIM40-208ENST00000489892 LEO1Q8WVC0 666 aaPredicted RBP13.32□□□□□ -0.28
TRIM40-208ENST00000489892 CPVLQ9H3G5 476 aa13.32□□□□□ -0.28
TRIM40-208ENST00000489892 RPAP3Q9H6T3 665 aaPredicted RBP13.32□□□□□ -0.28
TRIM40-208ENST00000489892 PSTPIP2Q9H939 334 aa13.32□□□□□ -0.28
TRIM40-208ENST00000489892 GBA2Q9HCG7 927 aaPredicted RBP13.32□□□□□ -0.28
TRIM40-208ENST00000489892 EMILIN3Q9NT22 766 aa13.32□□□□□ -0.28
TRIM40-208ENST00000489892 GJB4Q9NTQ9 266 aa13.32□□□□□ -0.28
TRIM40-208ENST00000489892 HOXC10Q9NYD6 342 aa13.32□□□□□ -0.28
TRIM40-208ENST00000489892 RCOR1Q9UKL0 485 aa13.32□□□□□ -0.28
TRIM40-208ENST00000489892 PPP1R9AQ9ULJ8 1098 aa13.32□□□□□ -0.28
TRIM40-208ENST00000489892 MRPL11Q9Y3B7 192 aaKnown RBP13.32□□□□□ -0.28
TRIM40-208ENST00000489892 ABCB11O95342 1321 aa13.32□□□□□ -0.28
TRIM40-208ENST00000489892 OTOFQ9HC10 1997 aa13.31□□□□□ -0.28
TRIM40-208ENST00000489892 KIF28PB7ZC32 967 aa13.31□□□□□ -0.28
TRIM40-208ENST00000489892 FOSP01100 380 aaPredicted RBP13.31□□□□□ -0.28
TRIM40-208ENST00000489892 HMGCS2P54868 508 aa13.31□□□□□ -0.28
TRIM40-208ENST00000489892 NONOQ15233 471 aaKnown RBP eCLIP13.31□□□□□ -0.28
TRIM40-208ENST00000489892 UVSSAQ2YD98 709 aa13.31□□□□□ -0.28
TRIM40-208ENST00000489892 MB21D1Q8N884 522 aa13.31□□□□□ -0.28
TRIM40-208ENST00000489892 SLC10A4Q96EP9 437 aa13.31□□□□□ -0.28
TRIM40-208ENST00000489892 PDLIM2Q96JY6 352 aa13.31□□□□□ -0.28
TRIM40-208ENST00000489892 USP28Q96RU2 1077 aa13.31□□□□□ -0.28
TRIM40-208ENST00000489892 EHMT1Q9H9B1 1298 aa13.31□□□□□ -0.28
TRIM40-208ENST00000489892 RRAGDQ9NQL2 400 aaPredicted RBP13.31□□□□□ -0.28
TRIM40-208ENST00000489892 PHIPQ8WWQ0 1821 aa13.3□□□□□ -0.28
TRIM40-208ENST00000489892 SPTLC2O15270 562 aa13.3□□□□□ -0.28
TRIM40-208ENST00000489892 PPP6R2O75170 966 aa13.3□□□□□ -0.28
TRIM40-208ENST00000489892 ICAM1P05362 532 aa13.3□□□□□ -0.28
TRIM40-208ENST00000489892 NR5A1Q13285 461 aa13.3□□□□□ -0.28
TRIM40-208ENST00000489892 SNAPC2Q13487 334 aa13.3□□□□□ -0.28
TRIM40-208ENST00000489892 COG2Q14746 738 aa13.3□□□□□ -0.28
TRIM40-208ENST00000489892 SLC39A14Q15043 492 aa13.3□□□□□ -0.28
TRIM40-208ENST00000489892 NPY5RQ15761 445 aa13.3□□□□□ -0.28
TRIM40-208ENST00000489892 CCDC183Q5T5S1 534 aa13.3□□□□□ -0.28
TRIM40-208ENST00000489892 RGMBQ6NW40 437 aa13.3□□□□□ -0.28
TRIM40-208ENST00000489892 CCDC84Q86UT8 332 aaPredicted RBP13.3□□□□□ -0.28
TRIM40-208ENST00000489892 ZSCAN30Q86W11 494 aa13.3□□□□□ -0.28
TRIM40-208ENST00000489892 MCF2L2Q86YR7 1114 aa13.3□□□□□ -0.28
TRIM40-208ENST00000489892 LINC00301Q8NCQ3 95 aa13.3□□□□□ -0.28
TRIM40-208ENST00000489892 GTF3C2Q8WUA4 911 aaPredicted RBP13.3□□□□□ -0.28
TRIM40-208ENST00000489892 TNFRSF25Q93038 417 aa13.3□□□□□ -0.28
TRIM40-208ENST00000489892 TSPY26PQ9H489 355 aa13.3□□□□□ -0.28
TRIM40-208ENST00000489892 ELP3Q9H9T3 547 aa13.3□□□□□ -0.28
TRIM40-208ENST00000489892 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.3□□□□□ -0.28
TRIM40-208ENST00000489892 MAP3K20Q9NYL2 800 aaKnown RBP13.3□□□□□ -0.28
TRIM40-208ENST00000489892 TMEM63CQ9P1W3 806 aa13.3□□□□□ -0.28
TRIM40-208ENST00000489892 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.3□□□□□ -0.28
TRIM40-208ENST00000489892 TFIP11Q9UBB9 837 aaKnown RBP13.3□□□□□ -0.28
TRIM40-208ENST00000489892 KCNH4Q9UQ05 1017 aa13.3□□□□□ -0.28
TRIM40-208ENST00000489892 A0A0G2JLL6 359 aaPredicted RBP13.29□□□□□ -0.28
TRIM40-208ENST00000489892 PIK3CDO00329 1044 aa13.29□□□□□ -0.28
TRIM40-208ENST00000489892 LAD1O00515 517 aa13.29□□□□□ -0.28
TRIM40-208ENST00000489892 GCFC2P16383 781 aaKnown RBP13.29□□□□□ -0.28
TRIM40-208ENST00000489892 ME1P48163 572 aa13.29□□□□□ -0.28
TRIM40-208ENST00000489892 DGKZQ13574 1117 aa13.29□□□□□ -0.28
TRIM40-208ENST00000489892 TKFCQ3LXA3 575 aa13.29□□□□□ -0.28
TRIM40-208ENST00000489892 KIAA1755Q5JYT7 1200 aa13.29□□□□□ -0.28
TRIM40-208ENST00000489892 TTC38Q5R3I4 469 aa13.29□□□□□ -0.28
TRIM40-208ENST00000489892 TYW1BQ6NUM6 668 aa13.29□□□□□ -0.28
TRIM40-208ENST00000489892 FAM173BQ6P4H8 233 aa13.29□□□□□ -0.28
TRIM40-208ENST00000489892 PIK3AP1Q6ZUJ8 805 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms