RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 VTI1AQ96AJ9 217 aa14.68□□□□□ -0.06
CPSF3-204ENST00000489403 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.68□□□□□ -0.067e-7■■□□□ 13.4
CPSF3-204ENST00000489403 CYP39A1Q9NYL5 469 aa14.68□□□□□ -0.06
CPSF3-204ENST00000489403 MTMR7Q9Y216 660 aa14.68□□□□□ -0.06
CPSF3-204ENST00000489403 GNEQ9Y223 722 aaKnown RBP14.68□□□□□ -0.06
CPSF3-204ENST00000489403 DDX49Q9Y6V7 483 aaKnown RBP14.68□□□□□ -0.06
CPSF3-204ENST00000489403 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.67□□□□□ -0.06
CPSF3-204ENST00000489403 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.67□□□□□ -0.06
CPSF3-204ENST00000489403 ASB14A6NK59 587 aa14.67□□□□□ -0.06
CPSF3-204ENST00000489403 RANBP6O60518 1105 aaKnown RBP14.67□□□□□ -0.06
CPSF3-204ENST00000489403 FOSL2P15408 326 aa14.67□□□□□ -0.06
CPSF3-204ENST00000489403 PTGS1P23219 599 aa14.67□□□□□ -0.06
CPSF3-204ENST00000489403 DNAJB2P25686 324 aa14.67□□□□□ -0.06
CPSF3-204ENST00000489403 ANKRD45Q5TZF3 282 aa14.67□□□□□ -0.06
CPSF3-204ENST00000489403 TLK2Q86UE8 772 aa14.67□□□□□ -0.06
CPSF3-204ENST00000489403 EVI5LQ96CN4 794 aa14.67□□□□□ -0.06
CPSF3-204ENST00000489403 VCANP13611 3396 aa14.67□□□□□ -0.06
CPSF3-204ENST00000489403 TLR3O15455 904 aaKnown RBP14.66□□□□□ -0.06
CPSF3-204ENST00000489403 ORC4O43929 436 aa14.66□□□□□ -0.06
CPSF3-204ENST00000489403 CD4P01730 458 aa14.66□□□□□ -0.06
CPSF3-204ENST00000489403 FGRP09769 529 aa14.66□□□□□ -0.06
CPSF3-204ENST00000489403 CSF2RAP15509 400 aa14.66□□□□□ -0.06
CPSF3-204ENST00000489403 PPIGQ13427 754 aaKnown RBP eCLIP14.66□□□□□ -0.06
CPSF3-204ENST00000489403 ALX1Q15699 326 aa14.66□□□□□ -0.06
CPSF3-204ENST00000489403 CCDC96Q2M329 555 aa14.66□□□□□ -0.06
CPSF3-204ENST00000489403 TMEM240Q5SV17 173 aa14.66□□□□□ -0.06
CPSF3-204ENST00000489403 NOL8Q76FK4 1167 aaKnown RBP14.66□□□□□ -0.06
CPSF3-204ENST00000489403 C16orf59Q7L2K0 433 aa14.66□□□□□ -0.06
CPSF3-204ENST00000489403 FBXO16Q8IX29 292 aaPredicted RBP14.66□□□□□ -0.06
CPSF3-204ENST00000489403 DCAF4Q8WV16 495 aa14.66□□□□□ -0.06
CPSF3-204ENST00000489403 PPP1R12CQ9BZL4 782 aa14.66□□□□□ -0.06
CPSF3-204ENST00000489403 RANBP17Q9H2T7 1088 aaKnown RBP14.66□□□□□ -0.06
CPSF3-204ENST00000489403 PDGFCQ9NRA1 345 aa14.66□□□□□ -0.06
CPSF3-204ENST00000489403 HELLSQ9NRZ9 838 aa14.66□□□□□ -0.06
CPSF3-204ENST00000489403 CCPG1Q9ULG6 757 aa14.66□□□□□ -0.06
CPSF3-204ENST00000489403 A0A0D9SFI3 127 aa14.65□□□□□ -0.06
CPSF3-204ENST00000489403 ICAM1P05362 532 aa14.65□□□□□ -0.06
CPSF3-204ENST00000489403 SMPD1P17405 629 aa14.65□□□□□ -0.06
CPSF3-204ENST00000489403 PDE1AP54750 535 aa14.65□□□□□ -0.06
CPSF3-204ENST00000489403 TMEM63BQ5T3F8 832 aa14.65□□□□□ -0.06
CPSF3-204ENST00000489403 TTBK2Q6IQ55 1244 aa14.65□□□□□ -0.06
CPSF3-204ENST00000489403 TAPT1Q6NXT6 567 aa14.65□□□□□ -0.06
CPSF3-204ENST00000489403 CXCL17Q6UXB2 119 aa14.65□□□□□ -0.06
CPSF3-204ENST00000489403 NSMFQ6X4W1 530 aa14.65□□□□□ -0.06
CPSF3-204ENST00000489403 EEPD1Q7L9B9 569 aa14.65□□□□□ -0.06
CPSF3-204ENST00000489403 TMEM199Q8N511 208 aa14.65□□□□□ -0.06
CPSF3-204ENST00000489403 SLC43A3Q8NBI5 491 aa14.65□□□□□ -0.06
CPSF3-204ENST00000489403 FAM227BQ96M60 508 aa14.65□□□□□ -0.06
CPSF3-204ENST00000489403 PURBQ96QR8 312 aaKnown RBP14.65□□□□□ -0.06
CPSF3-204ENST00000489403 CRBNQ96SW2 442 aa14.65□□□□□ -0.06
CPSF3-204ENST00000489403 ZBTB47Q9UFB7 747 aaPredicted RBP14.65□□□□□ -0.06
CPSF3-204ENST00000489403 DYNC1LI2O43237 492 aaPredicted RBP14.64□□□□□ -0.07
CPSF3-204ENST00000489403 FGAP02671 866 aa14.64□□□□□ -0.07
CPSF3-204ENST00000489403 ACRP10323 421 aa14.64□□□□□ -0.07
CPSF3-204ENST00000489403 SLC16A2P36021 539 aa14.64□□□□□ -0.07
CPSF3-204ENST00000489403 GRIN2CQ14957 1233 aa14.64□□□□□ -0.07
CPSF3-204ENST00000489403 FSCN1Q16658 493 aaKnown RBP14.64□□□□□ -0.07
CPSF3-204ENST00000489403 MCMDC2Q4G0Z9 681 aa14.64□□□□□ -0.07
CPSF3-204ENST00000489403 RRP12Q5JTH9 1297 aaKnown RBP14.64□□□□□ -0.07
CPSF3-204ENST00000489403 RASIP1Q5U651 963 aa14.64□□□□□ -0.07
CPSF3-204ENST00000489403 BTNL9Q6UXG8 535 aa14.64□□□□□ -0.07
CPSF3-204ENST00000489403 MORC4Q8TE76 937 aa14.64□□□□□ -0.07
CPSF3-204ENST00000489403 TMEM47Q9BQJ4 181 aa14.64□□□□□ -0.07
CPSF3-204ENST00000489403 TOMM22Q9NS69 142 aa14.64□□□□□ -0.07
CPSF3-204ENST00000489403 GRIN2DO15399 1336 aa14.64□□□□□ -0.07
CPSF3-204ENST00000489403 FRMPD2Q68DX3 1309 aaPredicted RBP14.64□□□□□ -0.07
CPSF3-204ENST00000489403 CABYRO75952 493 aa14.63□□□□□ -0.07
CPSF3-204ENST00000489403 HSPD1P10809 573 aaKnown RBP14.63□□□□□ -0.07
CPSF3-204ENST00000489403 CYP2C18P33260 490 aa14.63□□□□□ -0.07
CPSF3-204ENST00000489403 HDAC1Q13547 482 aaPredicted RBP14.63□□□□□ -0.07
CPSF3-204ENST00000489403 ITGA7Q13683 1181 aa14.63□□□□□ -0.07
CPSF3-204ENST00000489403 SYDE2Q5VT97 1194 aa14.63□□□□□ -0.07
CPSF3-204ENST00000489403 IQSEC1Q6DN90 963 aa14.63□□□□□ -0.07
CPSF3-204ENST00000489403 PSRC1Q6PGN9 363 aaPredicted RBP14.63□□□□□ -0.07
CPSF3-204ENST00000489403 ZNF365Q70YC5 407 aa14.63□□□□□ -0.07
CPSF3-204ENST00000489403 ZNF589Q86UQ0 364 aaPredicted RBP14.63□□□□□ -0.07
CPSF3-204ENST00000489403 TIFAQ96CG3 184 aa14.63□□□□□ -0.07
CPSF3-204ENST00000489403 PBX4Q9BYU1 374 aa14.63□□□□□ -0.07
CPSF3-204ENST00000489403 AP5M1Q9H0R1 490 aa14.63□□□□□ -0.07
CPSF3-204ENST00000489403 ZNF576Q9H609 170 aa14.63□□□□□ -0.07
CPSF3-204ENST00000489403 VTA1Q9NP79 307 aa14.63□□□□□ -0.07
CPSF3-204ENST00000489403 Q9Y3F1 56 aa14.63□□□□□ -0.07
CPSF3-204ENST00000489403 SPTBN5Q9NRC6 3674 aaKnown RBP14.63□□□□□ -0.07
CPSF3-204ENST00000489403 ZMYM6O95789 1325 aa14.63□□□□□ -0.07
CPSF3-204ENST00000489403 UMODL1Q5DID0 1318 aa14.63□□□□□ -0.07
CPSF3-204ENST00000489403 GRXCR1A8MXD5 290 aa14.62□□□□□ -0.07
CPSF3-204ENST00000489403 NFIBO00712 420 aa14.62□□□□□ -0.07
CPSF3-204ENST00000489403 ZEB2O60315 1214 aa14.62□□□□□ -0.07
CPSF3-204ENST00000489403 TOP1P11387 765 aaKnown RBP14.62□□□□□ -0.07
CPSF3-204ENST00000489403 PBX2P40425 430 aa14.62□□□□□ -0.07
CPSF3-204ENST00000489403 ALDH5A1P51649 535 aaPredicted RBP14.62□□□□□ -0.07
CPSF3-204ENST00000489403 BAATQ14032 418 aaPredicted RBP14.62□□□□□ -0.07
CPSF3-204ENST00000489403 KIAA1211Q6ZU35 1233 aa14.62□□□□□ -0.07
CPSF3-204ENST00000489403 HIPK3Q9H422 1215 aa14.62□□□□□ -0.07
CPSF3-204ENST00000489403 GPCPD1Q9NPB8 672 aa14.62□□□□□ -0.07
CPSF3-204ENST00000489403 TCP11L1Q9NUJ3 509 aa14.62□□□□□ -0.07
CPSF3-204ENST00000489403 RNF216Q9NWF9 866 aaPredicted RBP14.62□□□□□ -0.07
CPSF3-204ENST00000489403 GBF1Q92538 1859 aa14.61□□□□□ -0.07
CPSF3-204ENST00000489403 B4GALT4O60513 344 aa14.61□□□□□ -0.07
CPSF3-204ENST00000489403 PDHBP11177 359 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms