RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 CEBPZQ03701 1054 aaKnown RBP13.13□□□□□ -0.31
C9orf3-220ENST00000489318 AP3B2Q13367 1082 aa13.13□□□□□ -0.31
C9orf3-220ENST00000489318 NONOQ15233 471 aaKnown RBP eCLIP13.13□□□□□ -0.31
C9orf3-220ENST00000489318 TTC38Q5R3I4 469 aa13.13□□□□□ -0.31
C9orf3-220ENST00000489318 AXDND1Q5T1B0 1012 aaPredicted RBP13.13□□□□□ -0.31
C9orf3-220ENST00000489318 ADALQ6DHV7 355 aa13.13□□□□□ -0.31
C9orf3-220ENST00000489318 CATSPERGQ6ZRH7 1159 aa13.13□□□□□ -0.31
C9orf3-220ENST00000489318 MOB2Q70IA6 237 aa13.13□□□□□ -0.31
C9orf3-220ENST00000489318 JMYQ8N9B5 988 aa13.13□□□□□ -0.31
C9orf3-220ENST00000489318 REPS2Q8NFH8 660 aa13.13□□□□□ -0.31
C9orf3-220ENST00000489318 CNKSR2Q8WXI2 1034 aa13.13□□□□□ -0.31
C9orf3-220ENST00000489318 CLMNQ96JQ2 1002 aa13.13□□□□□ -0.31
C9orf3-220ENST00000489318 PSTPIP2Q9H939 334 aa13.13□□□□□ -0.31
C9orf3-220ENST00000489318 PCDHA7Q9UN72 937 aa13.13□□□□□ -0.31
C9orf3-220ENST00000489318 CEP131Q9UPN4 1083 aa13.13□□□□□ -0.31
C9orf3-220ENST00000489318 MEIS2O14770 477 aa13.12□□□□□ -0.31
C9orf3-220ENST00000489318 IRF6O14896 467 aa13.12□□□□□ -0.31
C9orf3-220ENST00000489318 ATP2A1O14983 1001 aa13.12□□□□□ -0.31
C9orf3-220ENST00000489318 ITGBL1O95965 494 aaPredicted RBP13.12□□□□□ -0.31
C9orf3-220ENST00000489318 DSG3P32926 999 aa13.12□□□□□ -0.31
C9orf3-220ENST00000489318 ATP2C1P98194 919 aaPredicted RBP13.12□□□□□ -0.31
C9orf3-220ENST00000489318 TTLL12Q14166 644 aaPredicted RBP13.12□□□□□ -0.31
C9orf3-220ENST00000489318 CHADLQ6NUI6 762 aa13.12□□□□□ -0.31
C9orf3-220ENST00000489318 OTUD5Q96G74 571 aa13.12□□□□□ -0.31
C9orf3-220ENST00000489318 FAM237AA0A1B0GTK4 181 aa13.11□□□□□ -0.31
C9orf3-220ENST00000489318 USP17L15C9J2P7 530 aa13.11□□□□□ -0.31
C9orf3-220ENST00000489318 USP17L13C9JLJ4 530 aa13.11□□□□□ -0.31
C9orf3-220ENST00000489318 USP17L11C9JVI0 530 aa13.11□□□□□ -0.31
C9orf3-220ENST00000489318 USP17L18D6R9N7 530 aa13.11□□□□□ -0.31
C9orf3-220ENST00000489318 USP17L22D6RA61 530 aa13.11□□□□□ -0.31
C9orf3-220ENST00000489318 USP17L17D6RBQ6 530 aa13.11□□□□□ -0.31
C9orf3-220ENST00000489318 USP17L19D6RCP7 530 aa13.11□□□□□ -0.31
C9orf3-220ENST00000489318 USP17L20D6RJB6 530 aa13.11□□□□□ -0.31
C9orf3-220ENST00000489318 VWA5AO00534 786 aa13.11□□□□□ -0.31
C9orf3-220ENST00000489318 PTPREP23469 700 aa13.11□□□□□ -0.31
C9orf3-220ENST00000489318 HOXA7P31268 230 aaPredicted RBP13.11□□□□□ -0.31
C9orf3-220ENST00000489318 SNAP25P60880 206 aa13.11□□□□□ -0.31
C9orf3-220ENST00000489318 USP17L24Q0WX57 530 aa13.11□□□□□ -0.31
C9orf3-220ENST00000489318 MOGSQ13724 837 aa13.11□□□□□ -0.31
C9orf3-220ENST00000489318 INF2Q27J81 1249 aa13.11□□□□□ -0.31
C9orf3-220ENST00000489318 USH1GQ495M9 461 aa13.11□□□□□ -0.31
C9orf3-220ENST00000489318 NEK8Q86SG6 692 aa13.11□□□□□ -0.31
C9orf3-220ENST00000489318 SAMD3Q8N6K7 520 aa13.11□□□□□ -0.31
C9orf3-220ENST00000489318 CRYGNQ8WXF5 182 aa13.11□□□□□ -0.31
C9orf3-220ENST00000489318 OPTNQ96CV9 577 aa13.11□□□□□ -0.31
C9orf3-220ENST00000489318 GBA2Q9HCG7 927 aaPredicted RBP13.11□□□□□ -0.31
C9orf3-220ENST00000489318 TMEM260Q9NX78 707 aa13.11□□□□□ -0.31
C9orf3-220ENST00000489318 BIN2Q9UBW5 565 aaPredicted RBP13.11□□□□□ -0.31
C9orf3-220ENST00000489318 FBXO2Q9UK22 296 aaPredicted RBP13.11□□□□□ -0.31
C9orf3-220ENST00000489318 MRPL11Q9Y3B7 192 aaKnown RBP13.11□□□□□ -0.31
C9orf3-220ENST00000489318 LCTP09848 1927 aa13.11□□□□□ -0.31
C9orf3-220ENST00000489318 SPDYE16A6NNV3 312 aaPredicted RBP13.1□□□□□ -0.31
C9orf3-220ENST00000489318 LAD1O00515 517 aa13.1□□□□□ -0.31
C9orf3-220ENST00000489318 EDIL3O43854 480 aa13.1□□□□□ -0.31
C9orf3-220ENST00000489318 CUTAO60888 179 aa13.1□□□□□ -0.31
C9orf3-220ENST00000489318 FOSP01100 380 aaPredicted RBP13.1□□□□□ -0.31
C9orf3-220ENST00000489318 GJA5P36382 358 aa13.1□□□□□ -0.31
C9orf3-220ENST00000489318 ME1P48163 572 aa13.1□□□□□ -0.31
C9orf3-220ENST00000489318 FMR1Q06787 632 aaKnown RBP eCLIP13.1□□□□□ -0.31
C9orf3-220ENST00000489318 COG2Q14746 738 aa13.1□□□□□ -0.31
C9orf3-220ENST00000489318 UBE2SQ16763 222 aa13.1□□□□□ -0.31
C9orf3-220ENST00000489318 JAKMIP3Q5VZ66 844 aa13.1□□□□□ -0.31
C9orf3-220ENST00000489318 CCDC174Q6PII3 467 aa13.1□□□□□ -0.31
C9orf3-220ENST00000489318 LBX2Q6XYB7 198 aa13.1□□□□□ -0.31
C9orf3-220ENST00000489318 ZNF579Q8NAF0 562 aaKnown RBP13.1□□□□□ -0.31
C9orf3-220ENST00000489318 TBCKQ8TEA7 893 aa13.1□□□□□ -0.31
C9orf3-220ENST00000489318 ATG4CQ96DT6 458 aa13.1□□□□□ -0.31
C9orf3-220ENST00000489318 ANO3Q9BYT9 981 aa13.1□□□□□ -0.31
C9orf3-220ENST00000489318 MAF1Q9H063 256 aa13.1□□□□□ -0.31
C9orf3-220ENST00000489318 ZNF214Q9UL59 606 aaPredicted RBP13.1□□□□□ -0.31
C9orf3-220ENST00000489318 SRPRBQ9Y5M8 271 aaKnown RBP13.1□□□□□ -0.31
C9orf3-220ENST00000489318 GOLGA6L4A6NEF3 574 aa13.09□□□□□ -0.31
C9orf3-220ENST00000489318 ZBED4O75132 1171 aa13.09□□□□□ -0.31
C9orf3-220ENST00000489318 TAL1P17542 331 aaPredicted RBP13.09□□□□□ -0.31
C9orf3-220ENST00000489318 HSD17B4P51659 736 aa13.09□□□□□ -0.31
C9orf3-220ENST00000489318 TREML2Q5T2D2 321 aa13.09□□□□□ -0.31
C9orf3-220ENST00000489318 ARL6IP4Q66PJ3 421 aaKnown RBP13.09□□□□□ -0.31
C9orf3-220ENST00000489318 USP17L6PQ6QN14 398 aa13.09□□□□□ -0.31
C9orf3-220ENST00000489318 MOXD1Q6UVY6 613 aa13.09□□□□□ -0.31
C9orf3-220ENST00000489318 C4orf32Q8N8J7 132 aa13.09□□□□□ -0.31
C9orf3-220ENST00000489318 KRI1Q8N9T8 703 aaKnown RBP13.09□□□□□ -0.31
C9orf3-220ENST00000489318 MRPS27Q92552 414 aaKnown RBP13.09□□□□□ -0.31
C9orf3-220ENST00000489318 FERMT2Q96AC1 680 aa13.09□□□□□ -0.31
C9orf3-220ENST00000489318 P2RX7Q99572 595 aaKnown RBP13.09□□□□□ -0.31
C9orf3-220ENST00000489318 MAP3K20Q9NYL2 800 aaKnown RBP13.09□□□□□ -0.31
C9orf3-220ENST00000489318 TMEM63CQ9P1W3 806 aa13.09□□□□□ -0.31
C9orf3-220ENST00000489318 CCPG1Q9ULG6 757 aa13.09□□□□□ -0.31
C9orf3-220ENST00000489318 AGTPBP1Q9UPW5 1226 aa13.09□□□□□ -0.31
C9orf3-220ENST00000489318 PASKQ96RG2 1323 aa13.09□□□□□ -0.31
C9orf3-220ENST00000489318 CELF2O95319 508 aaKnown RBP13.08□□□□□ -0.32
C9orf3-220ENST00000489318 ZBTB48P10074 688 aaPredicted RBP13.08□□□□□ -0.32
C9orf3-220ENST00000489318 GCFC2P16383 781 aaKnown RBP13.08□□□□□ -0.32
C9orf3-220ENST00000489318 LIG1P18858 919 aa13.08□□□□□ -0.32
C9orf3-220ENST00000489318 CMA1P23946 247 aa13.08□□□□□ -0.32
C9orf3-220ENST00000489318 MARCKSP29966 332 aaPredicted RBP13.08□□□□□ -0.32
C9orf3-220ENST00000489318 SREBF1P36956 1147 aa13.08□□□□□ -0.32
C9orf3-220ENST00000489318 PRPHP41219 470 aa13.08□□□□□ -0.32
C9orf3-220ENST00000489318 FAM160A1Q05DH4 1040 aa13.08□□□□□ -0.32
C9orf3-220ENST00000489318 RESP18Q5W5W9 173 aa13.08□□□□□ -0.32
C9orf3-220ENST00000489318 PPP4R3AQ6IN85 833 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms