RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 OAZ1P54368 228 aa22.34■■□□□ 1.17
CCM2-216ENST00000488727 LACTBP83111 547 aaPredicted RBP22.34■■□□□ 1.17
CCM2-216ENST00000488727 SNRNP48Q6IEG0 339 aaKnown RBP22.34■■□□□ 1.17
CCM2-216ENST00000488727 CAVIN1Q6NZI2 390 aaKnown RBP22.34■■□□□ 1.17
CCM2-216ENST00000488727 HOMER1Q86YM7 354 aa22.34■■□□□ 1.17
CCM2-216ENST00000488727 PIBF1Q8WXW3 757 aa22.34■■□□□ 1.17
CCM2-216ENST00000488727 TEX13BQ9BXU2 312 aa22.34■■□□□ 1.17
CCM2-216ENST00000488727 PANK2Q9BZ23 570 aa22.34■■□□□ 1.17
CCM2-216ENST00000488727 CASP8AP2Q9UKL3 1982 aa22.34■■□□□ 1.17
CCM2-216ENST00000488727 ZBTB5O15062 677 aa22.33■■□□□ 1.17
CCM2-216ENST00000488727 PPP1R11O60927 126 aaPredicted RBP22.33■■□□□ 1.17
CCM2-216ENST00000488727 ICAM1P05362 532 aa22.33■■□□□ 1.17
CCM2-216ENST00000488727 SYT1P21579 422 aa22.33■■□□□ 1.17
CCM2-216ENST00000488727 ZSCAN23Q3MJ62 389 aa22.33■■□□□ 1.17
CCM2-216ENST00000488727 RIOX2Q8IUF8 465 aa22.33■■□□□ 1.17
CCM2-216ENST00000488727 ARHGAP39Q9C0H5 1083 aa22.33■■□□□ 1.17
CCM2-216ENST00000488727 DOCK3Q8IZD9 2030 aa22.32■■□□□ 1.16
CCM2-216ENST00000488727 hCG_1642624A0A1W2PR95 340 aa22.32■■□□□ 1.16
CCM2-216ENST00000488727 FKTNO75072 461 aa22.32■■□□□ 1.16
CCM2-216ENST00000488727 PPFIA3O75145 1194 aa22.32■■□□□ 1.16
CCM2-216ENST00000488727 GTF3C6Q969F1 213 aa22.32■■□□□ 1.16
CCM2-216ENST00000488727 EFCC1Q9HA90 598 aa22.32■■□□□ 1.16
CCM2-216ENST00000488727 GJB2P29033 226 aa22.31■■□□□ 1.16
CCM2-216ENST00000488727 CHAMP1Q96JM3 812 aa22.31■■□□□ 1.16
CCM2-216ENST00000488727 CCPG1Q9ULG6 757 aa22.31■■□□□ 1.16
CCM2-216ENST00000488727 NCLP19338 710 aaKnown RBP22.31■■□□□ 1.16
CCM2-216ENST00000488727 ERCC3P19447 782 aa22.31■■□□□ 1.16
CCM2-216ENST00000488727 LBX1P52954 281 aa22.31■■□□□ 1.16
CCM2-216ENST00000488727 CCNA1P78396 465 aa22.31■■□□□ 1.16
CCM2-216ENST00000488727 PHKBQ93100 1093 aa22.31■■□□□ 1.16
CCM2-216ENST00000488727 RRP36Q96EU6 259 aaKnown RBP22.31■■□□□ 1.16
CCM2-216ENST00000488727 ATP6V1DQ9Y5K8 247 aa22.31■■□□□ 1.16
CCM2-216ENST00000488727 PLXNB2O15031 1838 aa22.3■■□□□ 1.16
CCM2-216ENST00000488727 PNMA6FA0A0J9YX94 578 aa22.3■■□□□ 1.16
CCM2-216ENST00000488727 DTNBO60941 627 aa22.3■■□□□ 1.16
CCM2-216ENST00000488727 F13A1P00488 732 aa22.3■■□□□ 1.16
CCM2-216ENST00000488727 IFNAR1P17181 557 aa22.3■■□□□ 1.16
CCM2-216ENST00000488727 CTCFP49711 727 aaPredicted RBP22.3■■□□□ 1.16
CCM2-216ENST00000488727 USH1GQ495M9 461 aa22.3■■□□□ 1.16
CCM2-216ENST00000488727 NCAPG2Q86XI2 1143 aa22.3■■□□□ 1.16
CCM2-216ENST00000488727 SHCBP1Q8NEM2 672 aa22.3■■□□□ 1.16
CCM2-216ENST00000488727 CD99L2Q8TCZ2 262 aa22.3■■□□□ 1.16
CCM2-216ENST00000488727 CPLX1O14810 134 aa22.29■■□□□ 1.16
CCM2-216ENST00000488727 CTDNEP1O95476 244 aa22.29■■□□□ 1.16
CCM2-216ENST00000488727 FBXO11Q86XK2 927 aa22.29■■□□□ 1.16
CCM2-216ENST00000488727 TRIM47Q96LD4 638 aa22.29■■□□□ 1.16
CCM2-216ENST00000488727 HOMER2Q9NSB8 354 aa22.29■■□□□ 1.16
CCM2-216ENST00000488727 V9GY48 417 aaPredicted RBP22.29■■□□□ 1.16
CCM2-216ENST00000488727 SLC25A27O95847 323 aa22.28■■□□□ 1.16
CCM2-216ENST00000488727 ALAS1P13196 640 aa22.28■■□□□ 1.16
CCM2-216ENST00000488727 PSMC4P43686 418 aa22.28■■□□□ 1.16
CCM2-216ENST00000488727 MAPK4P31152 587 aa22.28■■□□□ 1.16
CCM2-216ENST00000488727 MUM1L1Q5H9M0 696 aa22.28■■□□□ 1.16
CCM2-216ENST00000488727 WDR78Q5VTH9 848 aa22.28■■□□□ 1.16
CCM2-216ENST00000488727 GPR142Q7Z601 462 aa22.28■■□□□ 1.16
CCM2-216ENST00000488727 AMNQ9BXJ7 453 aa22.28■■□□□ 1.16
CCM2-216ENST00000488727 SEC63Q9UGP8 760 aaKnown RBP22.28■■□□□ 1.16
CCM2-216ENST00000488727 MTMR6Q9Y217 621 aa22.28■■□□□ 1.16
CCM2-216ENST00000488727 CCAR1Q8IX12 1150 aaKnown RBP22.27■■□□□ 1.16
CCM2-216ENST00000488727 ERO1AQ96HE7 468 aa22.27■■□□□ 1.16
CCM2-216ENST00000488727 TRERF1Q96PN7 1200 aa22.27■■□□□ 1.16
CCM2-216ENST00000488727 SLC26A6Q9BXS9 759 aa22.27■■□□□ 1.16
CCM2-216ENST00000488727 RNF26Q9BY78 433 aaPredicted RBP22.27■■□□□ 1.16
CCM2-216ENST00000488727 MROH8Q9H579 483 aa22.27■■□□□ 1.16
CCM2-216ENST00000488727 RNF146Q9NTX7 359 aa22.27■■□□□ 1.16
CCM2-216ENST00000488727 TMEM63CQ9P1W3 806 aa22.27■■□□□ 1.16
CCM2-216ENST00000488727 ZNFX1Q9P2E3 1918 aaKnown RBP22.27■■□□□ 1.16
CCM2-216ENST00000488727 PRPF3O43395 683 aaKnown RBP22.26■■□□□ 1.15
CCM2-216ENST00000488727 FCGRTP55899 365 aa22.26■■□□□ 1.15
CCM2-216ENST00000488727 KIF22Q14807 665 aa22.26■■□□□ 1.15
CCM2-216ENST00000488727 PKN1Q16512 942 aa22.26■■□□□ 1.15
CCM2-216ENST00000488727 COA7Q96BR5 231 aa22.26■■□□□ 1.15
CCM2-216ENST00000488727 PCDHA1Q9Y5I3 950 aa22.26■■□□□ 1.15
CCM2-216ENST00000488727 RBBP6Q7Z6E9 1792 aaKnown RBP22.26■■□□□ 1.15
CCM2-216ENST00000488727 TNPO2O14787 897 aaKnown RBP22.26■■□□□ 1.15
CCM2-216ENST00000488727 FMNL1O95466 1100 aaPredicted RBP22.26■■□□□ 1.15
CCM2-216ENST00000488727 COPB2P35606 906 aa22.26■■□□□ 1.15
CCM2-216ENST00000488727 TKFCQ3LXA3 575 aa22.26■■□□□ 1.15
CCM2-216ENST00000488727 CPLX2Q6PUV4 134 aaKnown RBP22.26■■□□□ 1.15
CCM2-216ENST00000488727 CHST13Q8NET6 341 aa22.26■■□□□ 1.15
CCM2-216ENST00000488727 CLEC4DQ8WXI8 215 aa22.26■■□□□ 1.15
CCM2-216ENST00000488727 GPKOWQ92917 476 aaPredicted RBP eCLIP22.26■■□□□ 1.15
CCM2-216ENST00000488727 RBM27Q9P2N5 1060 aaKnown RBP22.26■■□□□ 1.15
CCM2-216ENST00000488727 PNMA2Q9UL42 364 aa22.26■■□□□ 1.15
CCM2-216ENST00000488727 NFIBO00712 420 aa22.25■■□□□ 1.15
CCM2-216ENST00000488727 PDCP20941 246 aa22.25■■□□□ 1.15
CCM2-216ENST00000488727 PLEKHH3Q7Z736 793 aa22.25■■□□□ 1.15
CCM2-216ENST00000488727 NSUN7Q8NE18 718 aaKnown RBP22.25■■□□□ 1.15
CCM2-216ENST00000488727 SYAP1Q96A49 352 aaPredicted RBP22.25■■□□□ 1.15
CCM2-216ENST00000488727 ACAD9Q9H845 621 aa22.25■■□□□ 1.15
CCM2-216ENST00000488727 ZNF236Q9UL36 1845 aa22.25■■□□□ 1.15
CCM2-216ENST00000488727 OPLAHO14841 1288 aa22.24■■□□□ 1.15
CCM2-216ENST00000488727 ABCB11O95342 1321 aa22.24■■□□□ 1.15
CCM2-216ENST00000488727 SSRP1Q08945 709 aaKnown RBP22.24■■□□□ 1.15
CCM2-216ENST00000488727 PFKFB3Q16875 520 aaPredicted RBP22.24■■□□□ 1.15
CCM2-216ENST00000488727 WWC2Q6AWC2 1192 aa22.24■■□□□ 1.15
CCM2-216ENST00000488727 JAK2O60674 1132 aa22.23■■□□□ 1.15
CCM2-216ENST00000488727 CDKL5O76039 1030 aa22.23■■□□□ 1.15
CCM2-216ENST00000488727 LRSAM1Q6UWE0 723 aa22.23■■□□□ 1.15
CCM2-216ENST00000488727 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms