RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 DEFB123Q8N688 67 aa26.58■■□□□ 1.85
PTPN4-211ENST00000488279 KATNBL1Q9H079 304 aa26.58■■□□□ 1.85
PTPN4-211ENST00000488279 COL6A3P12111 3177 aa26.58■■□□□ 1.84
PTPN4-211ENST00000488279 ADCY6O43306 1168 aa26.57■■□□□ 1.84
PTPN4-211ENST00000488279 CST5P28325 142 aaPredicted RBP26.57■■□□□ 1.84
PTPN4-211ENST00000488279 GNASQ5JWF2 1037 aa26.57■■□□□ 1.84
PTPN4-211ENST00000488279 NSMFQ6X4W1 530 aa26.57■■□□□ 1.84
PTPN4-211ENST00000488279 NOL8Q76FK4 1167 aaKnown RBP26.57■■□□□ 1.84
PTPN4-211ENST00000488279 GLT1D1Q96MS3 346 aa26.57■■□□□ 1.84
PTPN4-211ENST00000488279 TOX2Q96NM4 488 aa26.57■■□□□ 1.84
PTPN4-211ENST00000488279 UPF3AQ9H1J1 476 aaKnown RBP26.57■■□□□ 1.84
PTPN4-211ENST00000488279 PNMA2Q9UL42 364 aa26.57■■□□□ 1.84
PTPN4-211ENST00000488279 MYADML2A6NDP7 307 aa26.56■■□□□ 1.84
PTPN4-211ENST00000488279 TNFAIP2Q03169 654 aa26.56■■□□□ 1.84
PTPN4-211ENST00000488279 ANKRD33Q7Z3H0 272 aa26.56■■□□□ 1.84
PTPN4-211ENST00000488279 DGKHQ86XP1 1220 aa26.56■■□□□ 1.84
PTPN4-211ENST00000488279 VTI1AQ96AJ9 217 aa26.56■■□□□ 1.84
PTPN4-211ENST00000488279 ELP1O95163 1332 aa26.56■■□□□ 1.84
PTPN4-211ENST00000488279 DCDC2CA8MYV0 355 aa26.55■■□□□ 1.84
PTPN4-211ENST00000488279 ASGR1P07306 291 aa26.55■■□□□ 1.84
PTPN4-211ENST00000488279 ZNF543Q08ER8 600 aa26.55■■□□□ 1.84
PTPN4-211ENST00000488279 CCDC178Q5BJE1 867 aa26.55■■□□□ 1.84
PTPN4-211ENST00000488279 IQCA1Q86XH1 822 aa26.55■■□□□ 1.84
PTPN4-211ENST00000488279 ZKSCAN3Q9BRR0 538 aa26.55■■□□□ 1.84
PTPN4-211ENST00000488279 DSCC1Q9BVC3 393 aa26.55■■□□□ 1.84
PTPN4-211ENST00000488279 TMEM39AQ9NV64 488 aa26.55■■□□□ 1.84
PTPN4-211ENST00000488279 CTNNA3Q9UI47 895 aa26.55■■□□□ 1.84
PTPN4-211ENST00000488279 NEDD4P46934 1319 aa26.55■■□□□ 1.84
PTPN4-211ENST00000488279 KIAA0355O15063 1070 aa26.54■■□□□ 1.84
PTPN4-211ENST00000488279 SNHG28P0DPA3 235 aa26.54■■□□□ 1.84
PTPN4-211ENST00000488279 IRX5P78411 483 aaPredicted RBP26.54■■□□□ 1.84
PTPN4-211ENST00000488279 RAG1P15918 1043 aa26.53■■□□□ 1.84
PTPN4-211ENST00000488279 NKX3-2P78367 333 aa26.53■■□□□ 1.84
PTPN4-211ENST00000488279 FAAP100Q0VG06 881 aa26.53■■□□□ 1.84
PTPN4-211ENST00000488279 BAATQ14032 418 aaPredicted RBP26.53■■□□□ 1.84
PTPN4-211ENST00000488279 SHHQ15465 462 aa26.53■■□□□ 1.84
PTPN4-211ENST00000488279 IMMTQ16891 758 aaKnown RBP26.53■■□□□ 1.84
PTPN4-211ENST00000488279 Q7L0L9 218 aa26.53■■□□□ 1.84
PTPN4-211ENST00000488279 ADD3Q9UEY8 706 aaKnown RBP26.53■■□□□ 1.84
PTPN4-211ENST00000488279 ASTN1O14525 1302 aa26.53■■□□□ 1.84
PTPN4-211ENST00000488279 C11orf97A0A1B0GVM6 126 aaPredicted RBP26.52■■□□□ 1.84
PTPN4-211ENST00000488279 KDM4AO75164 1064 aa26.52■■□□□ 1.84
PTPN4-211ENST00000488279 GPATCH4Q5T3I0 446 aaKnown RBP26.52■■□□□ 1.84
PTPN4-211ENST00000488279 IQSEC1Q6DN90 963 aa26.52■■□□□ 1.84
PTPN4-211ENST00000488279 PURBQ96QR8 312 aaKnown RBP26.52■■□□□ 1.84
PTPN4-211ENST00000488279 MROH7Q68CQ1 1323 aa26.51■■□□□ 1.83
PTPN4-211ENST00000488279 PTPDC1A2A3K4 754 aa26.51■■□□□ 1.83
PTPN4-211ENST00000488279 NFIBO00712 420 aa26.51■■□□□ 1.83
PTPN4-211ENST00000488279 ITGB8P26012 769 aa26.51■■□□□ 1.83
PTPN4-211ENST00000488279 EEPD1Q7L9B9 569 aa26.51■■□□□ 1.83
PTPN4-211ENST00000488279 GNEQ9Y223 722 aaKnown RBP26.51■■□□□ 1.83
PTPN4-211ENST00000488279 DDX49Q9Y6V7 483 aaKnown RBP26.51■■□□□ 1.83
PTPN4-211ENST00000488279 B4E1Z4 1266 aa26.5■■□□□ 1.83
PTPN4-211ENST00000488279 CTAGE5O15320 804 aa26.5■■□□□ 1.83
PTPN4-211ENST00000488279 CDK7P50613 346 aa26.5■■□□□ 1.83
PTPN4-211ENST00000488279 C9orf50Q5SZB4 431 aa26.5■■□□□ 1.83
PTPN4-211ENST00000488279 PNMA1Q8ND90 353 aa26.5■■□□□ 1.83
PTPN4-211ENST00000488279 MORC4Q8TE76 937 aa26.5■■□□□ 1.83
PTPN4-211ENST00000488279 ANKS1AQ92625 1134 aa26.5■■□□□ 1.83
PTPN4-211ENST00000488279 ZSCAN10Q96SZ4 725 aaPredicted RBP26.5■■□□□ 1.83
PTPN4-211ENST00000488279 AP5M1Q9H0R1 490 aa26.5■■□□□ 1.83
PTPN4-211ENST00000488279 KAT14Q9H8E8 782 aa26.5■■□□□ 1.83
PTPN4-211ENST00000488279 VTA1Q9NP79 307 aa26.5■■□□□ 1.83
PTPN4-211ENST00000488279 PDGFCQ9NRA1 345 aa26.5■■□□□ 1.83
PTPN4-211ENST00000488279 ZSWIM5Q9P217 1185 aa26.5■■□□□ 1.83
PTPN4-211ENST00000488279 A0A0U1RQG5 324 aaPredicted RBP26.49■■□□□ 1.83
PTPN4-211ENST00000488279 ARVCFO00192 962 aa26.49■■□□□ 1.83
PTPN4-211ENST00000488279 DYNC1LI2O43237 492 aaPredicted RBP26.49■■□□□ 1.83
PTPN4-211ENST00000488279 GOLGA8HP0CJ92 632 aa26.49■■□□□ 1.83
PTPN4-211ENST00000488279 SMPD1P17405 629 aa26.49■■□□□ 1.83
PTPN4-211ENST00000488279 PDE4AP27815 886 aa26.49■■□□□ 1.83
PTPN4-211ENST00000488279 BEX3Q00994 111 aa26.49■■□□□ 1.83
PTPN4-211ENST00000488279 TAPT1Q6NXT6 567 aa26.49■■□□□ 1.83
PTPN4-211ENST00000488279 TLK2Q86UE8 772 aa26.49■■□□□ 1.83
PTPN4-211ENST00000488279 FBXO16Q8IX29 292 aaPredicted RBP26.49■■□□□ 1.83
PTPN4-211ENST00000488279 CLEC4DQ8WXI8 215 aa26.49■■□□□ 1.83
PTPN4-211ENST00000488279 KRT23Q9C075 422 aa26.49■■□□□ 1.83
PTPN4-211ENST00000488279 MTMR10Q9NXD2 777 aa26.49■■□□□ 1.83
PTPN4-211ENST00000488279 WDR19Q8NEZ3 1342 aa26.48■■□□□ 1.83
PTPN4-211ENST00000488279 LOC102724159A0A0B4J2E5 919 aa26.48■■□□□ 1.83
PTPN4-211ENST00000488279 PWP2Q15269 919 aaKnown RBP26.48■■□□□ 1.83
PTPN4-211ENST00000488279 FSCN1Q16658 493 aaKnown RBP26.48■■□□□ 1.83
PTPN4-211ENST00000488279 TTC22Q5TAA0 569 aa26.48■■□□□ 1.83
PTPN4-211ENST00000488279 FAM109BQ6ICB4 259 aaPredicted RBP26.48■■□□□ 1.83
PTPN4-211ENST00000488279 RNF207Q6ZRF8 634 aa26.48■■□□□ 1.83
PTPN4-211ENST00000488279 KIAA1211Q6ZU35 1233 aa26.48■■□□□ 1.83
PTPN4-211ENST00000488279 CNNM2Q9H8M5 875 aa26.48■■□□□ 1.83
PTPN4-211ENST00000488279 Q9Y3F1 56 aa26.48■■□□□ 1.83
PTPN4-211ENST00000488279 MCM3APO60318 1980 aa26.47■■□□□ 1.83
PTPN4-211ENST00000488279 ZEB2O60315 1214 aa26.47■■□□□ 1.83
PTPN4-211ENST00000488279 CALML3P27482 149 aa26.47■■□□□ 1.83
PTPN4-211ENST00000488279 ALDH5A1P51649 535 aaPredicted RBP26.47■■□□□ 1.83
PTPN4-211ENST00000488279 UBA5Q9GZZ9 404 aa26.47■■□□□ 1.83
PTPN4-211ENST00000488279 LTBP2Q14767 1821 aa26.46■■□□□ 1.83
PTPN4-211ENST00000488279 A0A0C4DFX4 3053 aa26.46■■□□□ 1.83
PTPN4-211ENST00000488279 CABYRO75952 493 aa26.46■■□□□ 1.83
PTPN4-211ENST00000488279 TIMP1P01033 207 aa26.46■■□□□ 1.83
PTPN4-211ENST00000488279 GSPT1P15170 499 aaKnown RBP26.46■■□□□ 1.83
PTPN4-211ENST00000488279 FPGSQ05932 587 aa26.46■■□□□ 1.83
PTPN4-211ENST00000488279 ENAHQ8N8S7 591 aaPredicted RBP26.46■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms