RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 CDK12Q9NYV4 1490 aaPredicted RBP18.03■□□□□ 0.48
COL7A1-210ENST00000487017 SLFN14P0C7P3 912 aa18.03■□□□□ 0.48
COL7A1-210ENST00000487017 YWHAEP62258 255 aaKnown RBP18.03■□□□□ 0.48
COL7A1-210ENST00000487017 EHHADHQ08426 723 aa18.03■□□□□ 0.48
COL7A1-210ENST00000487017 GINS2Q9Y248 185 aa18.03■□□□□ 0.48
COL7A1-210ENST00000487017 ABCC12Q96J65 1359 aa18.03■□□□□ 0.48
COL7A1-210ENST00000487017 ENOX1Q8TC92 643 aaKnown RBP18.03■□□□□ 0.48
COL7A1-210ENST00000487017 BZW2Q9Y6E2 419 aaKnown RBP18.03■□□□□ 0.48
COL7A1-210ENST00000487017 FAM178BQ8IXR5 827 aa18.03■□□□□ 0.48
COL7A1-210ENST00000487017 SMYD4Q8IYR2 804 aaPredicted RBP18.03■□□□□ 0.48
COL7A1-210ENST00000487017 AK8Q96MA6 479 aa18.03■□□□□ 0.48
COL7A1-210ENST00000487017 RIC8AQ9NPQ8 531 aa18.03■□□□□ 0.48
COL7A1-210ENST00000487017 K7ENM7 598 aa18.02■□□□□ 0.48
COL7A1-210ENST00000487017 SH2B2O14492 632 aaPredicted RBP18.02■□□□□ 0.48
COL7A1-210ENST00000487017 LIG3P49916 1009 aa18.02■□□□□ 0.48
COL7A1-210ENST00000487017 PSMD6Q15008 389 aa18.02■□□□□ 0.48
COL7A1-210ENST00000487017 FAM102BQ5T8I3 360 aa18.02■□□□□ 0.48
COL7A1-210ENST00000487017 SEPT14Q6ZU15 432 aa18.02■□□□□ 0.48
COL7A1-210ENST00000487017 PHLDB2Q86SQ0 1253 aa18.02■□□□□ 0.48
COL7A1-210ENST00000487017 RSAD2Q8WXG1 361 aa18.02■□□□□ 0.48
COL7A1-210ENST00000487017 P2RX5Q93086 422 aa18.02■□□□□ 0.48
COL7A1-210ENST00000487017 CFAP74Q9C0B2 1584 aa18.02■□□□□ 0.48
COL7A1-210ENST00000487017 PHBP35232 272 aa18.02■□□□□ 0.48
COL7A1-210ENST00000487017 MAP2K2P36507 400 aa18.02■□□□□ 0.48
COL7A1-210ENST00000487017 BTDP43251 543 aa18.02■□□□□ 0.48
COL7A1-210ENST00000487017 PDE6CP51160 858 aa18.02■□□□□ 0.48
COL7A1-210ENST00000487017 EXOC3L4Q17RC7 722 aa18.02■□□□□ 0.48
COL7A1-210ENST00000487017 CASC4Q6P4E1 433 aa18.02■□□□□ 0.48
COL7A1-210ENST00000487017 NLRX1Q86UT6 975 aa18.02■□□□□ 0.48
COL7A1-210ENST00000487017 PALM2Q8IXS6 379 aa18.02■□□□□ 0.48
COL7A1-210ENST00000487017 KRT12Q99456 494 aa18.02■□□□□ 0.48
COL7A1-210ENST00000487017 SPTLC3Q9NUV7 552 aa18.02■□□□□ 0.48
COL7A1-210ENST00000487017 UGGT1Q9NYU2 1555 aa18.02■□□□□ 0.48
COL7A1-210ENST00000487017 ATP10DQ9P241 1426 aa18.02■□□□□ 0.48
COL7A1-210ENST00000487017 PTPN21Q16825 1174 aa18.02■□□□□ 0.48
COL7A1-210ENST00000487017 TYW1Q9NV66 732 aaKnown RBP18.02■□□□□ 0.48
COL7A1-210ENST00000487017 PPP2R5CQ13362 524 aa18.02■□□□□ 0.47
COL7A1-210ENST00000487017 LARP4BQ92615 738 aaKnown RBP18.02■□□□□ 0.47
COL7A1-210ENST00000487017 METP08581 1390 aa18.02■□□□□ 0.47
COL7A1-210ENST00000487017 GRAMD1CQ8IYS0 662 aa18.01■□□□□ 0.47
COL7A1-210ENST00000487017 SUPT20HQ8NEM7 779 aa18.01■□□□□ 0.47
COL7A1-210ENST00000487017 ATG3Q9NT62 314 aa18.01■□□□□ 0.47
COL7A1-210ENST00000487017 CPSF1Q10570 1443 aaKnown RBP18.01■□□□□ 0.47
COL7A1-210ENST00000487017 PRPF6O94906 941 aaKnown RBP18.01■□□□□ 0.47
COL7A1-210ENST00000487017 POLD1P28340 1107 aa18.01■□□□□ 0.47
COL7A1-210ENST00000487017 EPHB4P54760 987 aa18.01■□□□□ 0.47
COL7A1-210ENST00000487017 SEPT6Q14141 434 aa18.01■□□□□ 0.47
COL7A1-210ENST00000487017 FNBP4Q8N3X1 1017 aaPredicted RBP18.01■□□□□ 0.47
COL7A1-210ENST00000487017 EPSTI1Q96J88 318 aa18.01■□□□□ 0.47
COL7A1-210ENST00000487017 HINFPQ9BQA5 517 aa18.01■□□□□ 0.47
COL7A1-210ENST00000487017 RWDD2AQ9UIY3 292 aa18.01■□□□□ 0.47
COL7A1-210ENST00000487017 USP6P35125 1406 aa18.01■□□□□ 0.47
COL7A1-210ENST00000487017 H0YIN7 160 aa18.01■□□□□ 0.47
COL7A1-210ENST00000487017 ADAT2Q7Z6V5 191 aaKnown RBP18.01■□□□□ 0.47
COL7A1-210ENST00000487017 EEF2KMTQ96G04 330 aa18.01■□□□□ 0.47
COL7A1-210ENST00000487017 THAP12O43422 761 aa18■□□□□ 0.47
COL7A1-210ENST00000487017 IFNB1P01574 187 aa18■□□□□ 0.47
COL7A1-210ENST00000487017 CCT5P48643 541 aa18■□□□□ 0.47
COL7A1-210ENST00000487017 FBXO11Q86XK2 927 aa18■□□□□ 0.47
COL7A1-210ENST00000487017 TBC1D31Q96DN5 1066 aa18■□□□□ 0.47
COL7A1-210ENST00000487017 GJA3Q9Y6H8 435 aa18■□□□□ 0.47
COL7A1-210ENST00000487017 POLR2MP0CAP2 368 aa18■□□□□ 0.47
COL7A1-210ENST00000487017 ATP2B4P23634 1241 aa18■□□□□ 0.47
COL7A1-210ENST00000487017 DEPTORQ8TB45 409 aa18■□□□□ 0.47
COL7A1-210ENST00000487017 ATP2A3Q93084 1043 aa18■□□□□ 0.47
COL7A1-210ENST00000487017 RILPQ96NA2 401 aa18■□□□□ 0.47
COL7A1-210ENST00000487017 C1orf112Q9NSG2 853 aa18■□□□□ 0.47
COL7A1-210ENST00000487017 KIF1BO60333 1816 aa18■□□□□ 0.47
COL7A1-210ENST00000487017 SOWAHDA6NJG2 315 aa18■□□□□ 0.47
COL7A1-210ENST00000487017 OSBP2Q969R2 916 aa18■□□□□ 0.47
COL7A1-210ENST00000487017 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18■□□□□ 0.47
COL7A1-210ENST00000487017 MYL1P05976 194 aa18■□□□□ 0.47
COL7A1-210ENST00000487017 ALDH1B1P30837 517 aa18■□□□□ 0.47
COL7A1-210ENST00000487017 CTAGE3PQ8IX95 158 aa18■□□□□ 0.47
COL7A1-210ENST00000487017 SAMSN1Q9NSI8 373 aaKnown RBP18■□□□□ 0.47
COL7A1-210ENST00000487017 SEMA3EO15041 775 aa17.99■□□□□ 0.47
COL7A1-210ENST00000487017 IFNAR1P17181 557 aa17.99■□□□□ 0.47
COL7A1-210ENST00000487017 KCTD16Q68DU8 428 aa17.99■□□□□ 0.47
COL7A1-210ENST00000487017 LARGE2Q8N3Y3 721 aa17.99■□□□□ 0.47
COL7A1-210ENST00000487017 PASKQ96RG2 1323 aa17.99■□□□□ 0.47
COL7A1-210ENST00000487017 PTPN12Q05209 780 aaKnown RBP17.99■□□□□ 0.47
COL7A1-210ENST00000487017 FAM98CQ17RN3 349 aaKnown RBP17.99■□□□□ 0.47
COL7A1-210ENST00000487017 HOOK2Q96ED9 719 aa17.99■□□□□ 0.47
COL7A1-210ENST00000487017 TRIM6Q9C030 488 aaPredicted RBP17.99■□□□□ 0.47
COL7A1-210ENST00000487017 PUS7LQ9H0K6 701 aaKnown RBP17.99■□□□□ 0.47
COL7A1-210ENST00000487017 MRPL11Q9Y3B7 192 aaKnown RBP17.99■□□□□ 0.47
COL7A1-210ENST00000487017 PRAMEF22A3QJZ6 481 aa17.99■□□□□ 0.47
COL7A1-210ENST00000487017 CCDC151A5D8V7 595 aa17.99■□□□□ 0.47
COL7A1-210ENST00000487017 CLGNO14967 610 aa17.99■□□□□ 0.47
COL7A1-210ENST00000487017 P4HA1P13674 534 aa17.99■□□□□ 0.47
COL7A1-210ENST00000487017 BBOF1Q8ND07 529 aa17.99■□□□□ 0.47
COL7A1-210ENST00000487017 ACRBPQ8NEB7 543 aa17.99■□□□□ 0.47
COL7A1-210ENST00000487017 KIAA1024Q9UPX6 916 aa17.99■□□□□ 0.47
COL7A1-210ENST00000487017 SRPRBQ9Y5M8 271 aaKnown RBP17.99■□□□□ 0.47
COL7A1-210ENST00000487017 SHROOM2Q13796 1616 aa17.99■□□□□ 0.47
COL7A1-210ENST00000487017 LMNB1P20700 586 aa17.99■□□□□ 0.47
COL7A1-210ENST00000487017 MAN2A1Q16706 1144 aa17.99■□□□□ 0.47
COL7A1-210ENST00000487017 TTC19Q6DKK2 380 aaPredicted RBP17.99■□□□□ 0.47
COL7A1-210ENST00000487017 RUNDC3BQ96NL0 473 aa17.99■□□□□ 0.47
COL7A1-210ENST00000487017 TEKT3Q9BXF9 490 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms