RNA–Protein interactions for RNA: ENST00000486665.5

HDAC6-229, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-229ENST00000486665 SLC38A10Q9HBR0 1119 aa14.78□□□□□ -0.04
HDAC6-229ENST00000486665 SMC3Q9UQE7 1217 aa14.78□□□□□ -0.04
HDAC6-229ENST00000486665 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.78□□□□□ -0.04
HDAC6-229ENST00000486665 DOCK3Q8IZD9 2030 aa14.78□□□□□ -0.04
HDAC6-229ENST00000486665 ZNF536O15090 1300 aa14.77□□□□□ -0.04
HDAC6-229ENST00000486665 STK36Q9NRP7 1315 aa14.77□□□□□ -0.04
HDAC6-229ENST00000486665 RLFQ13129 1914 aa14.77□□□□□ -0.04
HDAC6-229ENST00000486665 PNMA6FA0A0J9YX94 578 aa14.77□□□□□ -0.05
HDAC6-229ENST00000486665 ZBTB5O15062 677 aa14.77□□□□□ -0.05
HDAC6-229ENST00000486665 ZBED4O75132 1171 aa14.77□□□□□ -0.05
HDAC6-229ENST00000486665 CNMDO75829 334 aa14.77□□□□□ -0.05
HDAC6-229ENST00000486665 CCL5P13501 91 aa14.77□□□□□ -0.05
HDAC6-229ENST00000486665 GJB2P29033 226 aa14.77□□□□□ -0.05
HDAC6-229ENST00000486665 GRK4P32298 578 aa14.77□□□□□ -0.05
HDAC6-229ENST00000486665 AKAP17AQ02040 695 aaKnown RBP14.77□□□□□ -0.05
HDAC6-229ENST00000486665 TMEM132BQ14DG7 1078 aa14.77□□□□□ -0.05
HDAC6-229ENST00000486665 PFKFB3Q16875 520 aaPredicted RBP14.77□□□□□ -0.05
HDAC6-229ENST00000486665 UBE2Q1Q7Z7E8 422 aa14.77□□□□□ -0.05
HDAC6-229ENST00000486665 TRIM22Q8IYM9 498 aa14.77□□□□□ -0.05
HDAC6-229ENST00000486665 RAET1EQ8TD07 263 aa14.77□□□□□ -0.05
HDAC6-229ENST00000486665 BTBD7Q9P203 1132 aa14.77□□□□□ -0.05
HDAC6-229ENST00000486665 RBPJLQ9UBG7 517 aa14.77□□□□□ -0.05
HDAC6-229ENST00000486665 PNMA3Q9UL41 463 aa14.77□□□□□ -0.05
HDAC6-229ENST00000486665 DEXIO95424 95 aa14.76□□□□□ -0.05
HDAC6-229ENST00000486665 LBX2Q6XYB7 198 aa14.76□□□□□ -0.05
HDAC6-229ENST00000486665 GPKOWQ92917 476 aaPredicted RBP eCLIP14.76□□□□□ -0.05
HDAC6-229ENST00000486665 COA7Q96BR5 231 aa14.76□□□□□ -0.05
HDAC6-229ENST00000486665 AGBL1Q96MI9 1066 aa14.76□□□□□ -0.05
HDAC6-229ENST00000486665 PARK7Q99497 189 aaKnown RBP14.76□□□□□ -0.05
HDAC6-229ENST00000486665 RAVER2Q9HCJ3 691 aaKnown RBP14.76□□□□□ -0.05
HDAC6-229ENST00000486665 TXNRD2Q9NNW7 524 aa14.76□□□□□ -0.05
HDAC6-229ENST00000486665 GJB4Q9NTQ9 266 aa14.76□□□□□ -0.05
HDAC6-229ENST00000486665 BAZ2BQ9UIF8 2168 aaKnown RBP14.75□□□□□ -0.05
HDAC6-229ENST00000486665 HSP90AA1P07900 732 aaKnown RBP14.75□□□□□ -0.05
HDAC6-229ENST00000486665 FDX1P10109 184 aa14.75□□□□□ -0.05
HDAC6-229ENST00000486665 SCG2P13521 617 aa14.75□□□□□ -0.05
HDAC6-229ENST00000486665 FOSBP53539 338 aa14.75□□□□□ -0.05
HDAC6-229ENST00000486665 HMGN5P82970 282 aaKnown RBP14.75□□□□□ -0.05
HDAC6-229ENST00000486665 Q3C1V9 767 aa14.75□□□□□ -0.05
HDAC6-229ENST00000486665 WWC2Q6AWC2 1192 aa14.75□□□□□ -0.05
HDAC6-229ENST00000486665 TYW1BQ6NUM6 668 aa14.75□□□□□ -0.05
HDAC6-229ENST00000486665 CHRDL2Q6WN34 429 aa14.75□□□□□ -0.05
HDAC6-229ENST00000486665 CPXCR1Q8N123 301 aa14.75□□□□□ -0.05
HDAC6-229ENST00000486665 IPO9Q96P70 1041 aaKnown RBP14.75□□□□□ -0.05
HDAC6-229ENST00000486665 ALG1Q9BT22 464 aa14.75□□□□□ -0.05
HDAC6-229ENST00000486665 UNC93B1Q9H1C4 597 aa14.75□□□□□ -0.05
HDAC6-229ENST00000486665 SEC63Q9UGP8 760 aaKnown RBP14.75□□□□□ -0.05
HDAC6-229ENST00000486665 ALPK3Q96L96 1907 aa14.74□□□□□ -0.05
HDAC6-229ENST00000486665 STXBP3O00186 592 aa14.74□□□□□ -0.05
HDAC6-229ENST00000486665 ICAM1P05362 532 aa14.74□□□□□ -0.05
HDAC6-229ENST00000486665 GJA8P48165 433 aa14.74□□□□□ -0.05
HDAC6-229ENST00000486665 HEATR3Q7Z4Q2 680 aa14.74□□□□□ -0.05
HDAC6-229ENST00000486665 FBXO11Q86XK2 927 aa14.74□□□□□ -0.05
HDAC6-229ENST00000486665 FAM184AQ8NB25 1140 aa14.74□□□□□ -0.05
HDAC6-229ENST00000486665 PAGR1Q9BTK6 254 aa14.74□□□□□ -0.05
HDAC6-229ENST00000486665 AMNQ9BXJ7 453 aa14.74□□□□□ -0.05
HDAC6-229ENST00000486665 RNF208Q9H0X6 261 aa14.74□□□□□ -0.05
HDAC6-229ENST00000486665 VPS54Q9P1Q0 977 aa14.74□□□□□ -0.05
HDAC6-229ENST00000486665 RBM27Q9P2N5 1060 aaKnown RBP14.74□□□□□ -0.05
HDAC6-229ENST00000486665 ZNF214Q9UL59 606 aaPredicted RBP14.74□□□□□ -0.05
HDAC6-229ENST00000486665 RABGAP1Q9Y3P9 1069 aa14.74□□□□□ -0.05
HDAC6-229ENST00000486665 RIPK3Q9Y572 518 aa14.74□□□□□ -0.05
HDAC6-229ENST00000486665 CTDP1Q9Y5B0 961 aaPredicted RBP14.74□□□□□ -0.05
HDAC6-229ENST00000486665 GJB1P08034 283 aa14.73□□□□□ -0.05
HDAC6-229ENST00000486665 ELNP15502 786 aa14.73□□□□□ -0.05
HDAC6-229ENST00000486665 HOXD10P28358 340 aa14.73□□□□□ -0.05
HDAC6-229ENST00000486665 STAT3P40763 770 aa14.73□□□□□ -0.05
HDAC6-229ENST00000486665 FCGRTP55899 365 aa14.73□□□□□ -0.05
HDAC6-229ENST00000486665 PLS1Q14651 629 aa14.73□□□□□ -0.05
HDAC6-229ENST00000486665 USH1GQ495M9 461 aa14.73□□□□□ -0.05
HDAC6-229ENST00000486665 MB21D1Q8N884 522 aa14.73□□□□□ -0.05
HDAC6-229ENST00000486665 SMCR8Q8TEV9 937 aaPredicted RBP14.73□□□□□ -0.05
HDAC6-229ENST00000486665 BARHL2Q9NY43 387 aa14.73□□□□□ -0.05
HDAC6-229ENST00000486665 CCPG1Q9ULG6 757 aa14.73□□□□□ -0.05
HDAC6-229ENST00000486665 PCDHA1Q9Y5I3 950 aa14.73□□□□□ -0.05
HDAC6-229ENST00000486665 PARP14Q460N5 1801 aa14.73□□□□□ -0.05
HDAC6-229ENST00000486665 ATP2A1O14983 1001 aa14.72□□□□□ -0.05
HDAC6-229ENST00000486665 ADAMTS3O15072 1205 aa14.72□□□□□ -0.05
HDAC6-229ENST00000486665 GCLCP48506 637 aaPredicted RBP14.72□□□□□ -0.05
HDAC6-229ENST00000486665 FLT3LGP49771 235 aa14.72□□□□□ -0.05
HDAC6-229ENST00000486665 OAZ1P54368 228 aa14.72□□□□□ -0.05
HDAC6-229ENST00000486665 GUCY1B3Q02153 619 aa14.72□□□□□ -0.05
HDAC6-229ENST00000486665 SNRNP48Q6IEG0 339 aaKnown RBP14.72□□□□□ -0.05
HDAC6-229ENST00000486665 ANKRD13CQ8N6S4 541 aa14.72□□□□□ -0.05
HDAC6-229ENST00000486665 U2AF1L4Q8WU68 220 aaKnown RBP14.72□□□□□ -0.05
HDAC6-229ENST00000486665 GTF3C2Q8WUA4 911 aaPredicted RBP14.72□□□□□ -0.05
HDAC6-229ENST00000486665 WASF1Q92558 559 aa14.72□□□□□ -0.05
HDAC6-229ENST00000486665 DPF3Q92784 378 aa14.72□□□□□ -0.05
HDAC6-229ENST00000486665 SPATC1LQ9H0A9 340 aa14.72□□□□□ -0.05
HDAC6-229ENST00000486665 BIN2Q9UBW5 565 aaPredicted RBP14.72□□□□□ -0.05
HDAC6-229ENST00000486665 DAXXQ9UER7 740 aaPredicted RBP14.72□□□□□ -0.05
HDAC6-229ENST00000486665 KCNJ14Q9UNX9 436 aa14.72□□□□□ -0.05
HDAC6-229ENST00000486665 LAMA3Q16787 3333 aa14.71□□□□□ -0.05
HDAC6-229ENST00000486665 ADCY3O60266 1144 aa14.71□□□□□ -0.05
HDAC6-229ENST00000486665 ALAS1P13196 640 aa14.71□□□□□ -0.05
HDAC6-229ENST00000486665 ERVK-9P63128 1117 aa14.71□□□□□ -0.05
HDAC6-229ENST00000486665 ERVK-24P63145 666 aa14.71□□□□□ -0.05
HDAC6-229ENST00000486665 MUM1L1Q5H9M0 696 aa14.71□□□□□ -0.05
HDAC6-229ENST00000486665 LARP1BQ659C4 914 aaKnown RBP14.71□□□□□ -0.05
HDAC6-229ENST00000486665 GPRC5AQ8NFJ5 357 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms