RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 C6orf15Q6UXA7 325 aaPredicted RBP6.44□□□□□ -1.38
VPS41-213ENST00000485955 ANKLE2Q86XL3 938 aa6.44□□□□□ -1.38
VPS41-213ENST00000485955 KLHL14Q9P2G3 628 aa6.44□□□□□ -1.38
VPS41-213ENST00000485955 SUGT1Q9Y2Z0 365 aa6.44□□□□□ -1.38
VPS41-213ENST00000485955 TEX51A0A1B0GUA7 166 aa6.43□□□□□ -1.38
VPS41-213ENST00000485955 C2orf71A6NGG8 1288 aa6.43□□□□□ -1.38
VPS41-213ENST00000485955 B2RBV5 119 aa6.43□□□□□ -1.38
VPS41-213ENST00000485955 NPIPB6E9PJ23 425 aa6.43□□□□□ -1.38
VPS41-213ENST00000485955 VIPR1P32241 457 aa6.43□□□□□ -1.38
VPS41-213ENST00000485955 YBX1P67809 324 aaKnown RBP6.43□□□□□ -1.38
VPS41-213ENST00000485955 SRSF3P84103 164 aaKnown RBP6.43□□□□□ -1.38
VPS41-213ENST00000485955 ARID5AQ03989 594 aa6.43□□□□□ -1.38
VPS41-213ENST00000485955 LAPTM5Q13571 262 aa6.43□□□□□ -1.38
VPS41-213ENST00000485955 LARP1BQ659C4 914 aaKnown RBP6.43□□□□□ -1.38
VPS41-213ENST00000485955 TMEM132EQ6IEE7 984 aa6.43□□□□□ -1.38
VPS41-213ENST00000485955 RCSD1Q6JBY9 416 aa6.43□□□□□ -1.38
VPS41-213ENST00000485955 JAMLQ86YT9 394 aa6.43□□□□□ -1.38
VPS41-213ENST00000485955 C1QL4Q86Z23 238 aa6.43□□□□□ -1.38
VPS41-213ENST00000485955 APBA2Q99767 749 aa6.43□□□□□ -1.38
VPS41-213ENST00000485955 ZNF408Q9H9D4 720 aa6.43□□□□□ -1.38
VPS41-213ENST00000485955 ACTR10Q9NZ32 417 aa6.43□□□□□ -1.38
VPS41-213ENST00000485955 PRKAG3Q9UGI9 489 aa6.43□□□□□ -1.38
VPS41-213ENST00000485955 MBD1Q9UIS9 605 aaPredicted RBP6.43□□□□□ -1.38
VPS41-213ENST00000485955 AKT3Q9Y243 479 aa6.43□□□□□ -1.38
VPS41-213ENST00000485955 EMC9Q9Y3B6 208 aa6.43□□□□□ -1.38
VPS41-213ENST00000485955 E9PSI1 815 aa6.42□□□□□ -1.38
VPS41-213ENST00000485955 PPP1R11O60927 126 aaPredicted RBP6.42□□□□□ -1.38
VPS41-213ENST00000485955 MPOP05164 745 aa6.42□□□□□ -1.38
VPS41-213ENST00000485955 DNAJA1P31689 397 aaKnown RBP6.42□□□□□ -1.38
VPS41-213ENST00000485955 AMPD2Q01433 879 aa6.42□□□□□ -1.38
VPS41-213ENST00000485955 NCAPHQ15003 741 aa6.42□□□□□ -1.38
VPS41-213ENST00000485955 CYP2R1Q6VVX0 501 aa6.42□□□□□ -1.38
VPS41-213ENST00000485955 TNFRSF12AQ9NP84 129 aa6.42□□□□□ -1.38
VPS41-213ENST00000485955 TCAF2A6NFQ2 919 aa6.41□□□□□ -1.38
VPS41-213ENST00000485955 NUDT19A8MXV4 375 aa6.41□□□□□ -1.38
VPS41-213ENST00000485955 SEMA7AO75326 666 aa6.41□□□□□ -1.38
VPS41-213ENST00000485955 KCNH1O95259 989 aa6.41□□□□□ -1.38
VPS41-213ENST00000485955 TBC1D8O95759 1140 aa6.41□□□□□ -1.38
VPS41-213ENST00000485955 ARL4AP40617 200 aa6.41□□□□□ -1.38
VPS41-213ENST00000485955 GRB10Q13322 594 aa6.41□□□□□ -1.38
VPS41-213ENST00000485955 KCNA10Q16322 511 aa6.41□□□□□ -1.38
VPS41-213ENST00000485955 EEF1DP3Q658K8 133 aa6.41□□□□□ -1.38
VPS41-213ENST00000485955 MRM1Q6IN84 353 aaKnown RBP6.41□□□□□ -1.38
VPS41-213ENST00000485955 FAM178BQ8IXR5 827 aa6.41□□□□□ -1.38
VPS41-213ENST00000485955 BVESQ8NE79 360 aa6.41□□□□□ -1.38
VPS41-213ENST00000485955 CNTD2Q9H8S5 307 aa6.41□□□□□ -1.38
VPS41-213ENST00000485955 GPRC5CQ9NQ84 441 aa6.41□□□□□ -1.38
VPS41-213ENST00000485955 A0A1W2PQ27 194 aa6.4□□□□□ -1.38
VPS41-213ENST00000485955 A0A1W2PQ64 194 aa6.4□□□□□ -1.38
VPS41-213ENST00000485955 A0A1W2PQC6 194 aa6.4□□□□□ -1.38
VPS41-213ENST00000485955 A0A1W2PQD8 194 aa6.4□□□□□ -1.38
VPS41-213ENST00000485955 HRKO00198 91 aa6.4□□□□□ -1.38
VPS41-213ENST00000485955 TACR1P25103 407 aa6.4□□□□□ -1.38
VPS41-213ENST00000485955 L1CAMP32004 1257 aa6.4□□□□□ -1.38
VPS41-213ENST00000485955 SEPHS1P49903 392 aa6.4□□□□□ -1.38
VPS41-213ENST00000485955 ZNF143P52747 638 aaPredicted RBP6.4□□□□□ -1.38
VPS41-213ENST00000485955 EPHB3P54753 998 aa6.4□□□□□ -1.38
VPS41-213ENST00000485955 CYP4F3Q08477 520 aa6.4□□□□□ -1.38
VPS41-213ENST00000485955 RAB3GAP1Q15042 981 aa6.4□□□□□ -1.38
VPS41-213ENST00000485955 TNNI3KQ59H18 835 aa6.4□□□□□ -1.38
VPS41-213ENST00000485955 RPTNQ6XPR3 784 aa6.4□□□□□ -1.38
VPS41-213ENST00000485955 CPNE8Q86YQ8 564 aa6.4□□□□□ -1.38
VPS41-213ENST00000485955 LRRC56Q8IYG6 542 aaPredicted RBP6.4□□□□□ -1.38
VPS41-213ENST00000485955 SLC43A3Q8NBI5 491 aa6.4□□□□□ -1.38
VPS41-213ENST00000485955 NLGN2Q8NFZ4 835 aa6.4□□□□□ -1.38
VPS41-213ENST00000485955 MRGPRX3Q96LB0 322 aa6.4□□□□□ -1.38
VPS41-213ENST00000485955 TOX2Q96NM4 488 aa6.4□□□□□ -1.38
VPS41-213ENST00000485955 GMLQ99445 158 aa6.4□□□□□ -1.38
VPS41-213ENST00000485955 PDLIM7Q9NR12 457 aa6.4□□□□□ -1.38
VPS41-213ENST00000485955 BACE2Q9Y5Z0 518 aa6.4□□□□□ -1.38
VPS41-213ENST00000485955 ADAMTS20P59510 1910 aa6.39□□□□□ -1.39
VPS41-213ENST00000485955 TBX1O43435 398 aa6.39□□□□□ -1.39
VPS41-213ENST00000485955 DDAH1O94760 285 aa6.39□□□□□ -1.39
VPS41-213ENST00000485955 LINC00310P59036 64 aa6.39□□□□□ -1.39
VPS41-213ENST00000485955 CBX2Q14781 532 aaPredicted RBP6.39□□□□□ -1.39
VPS41-213ENST00000485955 GTF2IRD2BQ6EKJ0 949 aa6.39□□□□□ -1.39
VPS41-213ENST00000485955 SPOCD1Q6ZMY3 1216 aa6.39□□□□□ -1.39
VPS41-213ENST00000485955 LCNL1Q6ZST4 164 aa6.39□□□□□ -1.39
VPS41-213ENST00000485955 GTF2IRD2Q86UP8 949 aa6.39□□□□□ -1.39
VPS41-213ENST00000485955 COPS5Q92905 334 aa6.39□□□□□ -1.39
VPS41-213ENST00000485955 PPP1R14AQ96A00 147 aa6.39□□□□□ -1.39
VPS41-213ENST00000485955 SIRT5Q9NXA8 310 aa6.39□□□□□ -1.39
VPS41-213ENST00000485955 FBLN5Q9UBX5 448 aa6.39□□□□□ -1.39
VPS41-213ENST00000485955 HCFC2Q9Y5Z7 792 aa6.39□□□□□ -1.39
VPS41-213ENST00000485955 GJB6O95452 261 aa6.38□□□□□ -1.39
VPS41-213ENST00000485955 DBHP09172 617 aa6.38□□□□□ -1.39
VPS41-213ENST00000485955 CDR1P51861 262 aa6.38□□□□□ -1.39
VPS41-213ENST00000485955 SCRN1Q12765 414 aa6.38□□□□□ -1.39
VPS41-213ENST00000485955 SSPNQ14714 243 aa6.38□□□□□ -1.39
VPS41-213ENST00000485955 TMC6Q7Z403 805 aa6.38□□□□□ -1.39
VPS41-213ENST00000485955 TRIM59Q8IWR1 403 aa6.38□□□□□ -1.39
VPS41-213ENST00000485955 PANK1Q8TE04 598 aa6.38□□□□□ -1.39
VPS41-213ENST00000485955 HNRNPLLQ8WVV9 542 aaKnown RBP6.38□□□□□ -1.39
VPS41-213ENST00000485955 NPHP3-ACAD11A0A0J9YXS1 232 aa6.37□□□□□ -1.39
VPS41-213ENST00000485955 ARNTLO00327 626 aa6.37□□□□□ -1.39
VPS41-213ENST00000485955 NOP56O00567 594 aaKnown RBP6.37□□□□□ -1.39
VPS41-213ENST00000485955 ABLIM1O14639 778 aa6.37□□□□□ -1.39
VPS41-213ENST00000485955 SUSD5O60279 629 aa6.37□□□□□ -1.39
VPS41-213ENST00000485955 ITGAVP06756 1048 aa6.37□□□□□ -1.39
VPS41-213ENST00000485955 PLS3P13797 630 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 136.3 ms