RNA–Protein interactions for RNA: ENST00000485780.1

SHROOM3-207, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 531 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-207ENST00000485780 PORCNQ9H237 461 aa10.82□□□□□ -0.68
SHROOM3-207ENST00000485780 PPP1R11O60927 126 aaPredicted RBP10.81□□□□□ -0.68
SHROOM3-207ENST00000485780 LARGE1O95461 756 aa10.81□□□□□ -0.68
SHROOM3-207ENST00000485780 HMGCRP04035 888 aa10.81□□□□□ -0.68
SHROOM3-207ENST00000485780 IFNAR1P17181 557 aa10.81□□□□□ -0.68
SHROOM3-207ENST00000485780 CYP2B6P20813 491 aa10.81□□□□□ -0.68
SHROOM3-207ENST00000485780 GJA8P48165 433 aa10.81□□□□□ -0.68
SHROOM3-207ENST00000485780 ST3GAL1Q11201 340 aa10.81□□□□□ -0.68
SHROOM3-207ENST00000485780 ME3Q16798 604 aa10.81□□□□□ -0.68
SHROOM3-207ENST00000485780 QRICH1Q2TAL8 776 aa10.81□□□□□ -0.68
SHROOM3-207ENST00000485780 TKFCQ3LXA3 575 aa10.81□□□□□ -0.68
SHROOM3-207ENST00000485780 SNRNP48Q6IEG0 339 aaKnown RBP10.81□□□□□ -0.68
SHROOM3-207ENST00000485780 SAMD1Q6SPF0 538 aaPredicted RBP10.81□□□□□ -0.68
SHROOM3-207ENST00000485780 PLEKHH3Q7Z736 793 aa10.81□□□□□ -0.68
SHROOM3-207ENST00000485780 RAB11FIP4Q86YS3 637 aa10.81□□□□□ -0.68
SHROOM3-207ENST00000485780 CCDC144CPQ8IYA2 1237 aa10.81□□□□□ -0.68
SHROOM3-207ENST00000485780 MAF1Q9H063 256 aa10.81□□□□□ -0.68
SHROOM3-207ENST00000485780 MROH8Q9H579 483 aa10.81□□□□□ -0.68
SHROOM3-207ENST00000485780 ISY1Q9ULR0 285 aaKnown RBP10.81□□□□□ -0.68
SHROOM3-207ENST00000485780 LIMCH1Q9UPQ0 1083 aa10.81□□□□□ -0.68
SHROOM3-207ENST00000485780 LRRC37A2A6NM11 1700 aa10.81□□□□□ -0.68
SHROOM3-207ENST00000485780 PNMA6FA0A0J9YX94 578 aa10.8□□□□□ -0.68
SHROOM3-207ENST00000485780 ST18O60284 1047 aa10.8□□□□□ -0.68
SHROOM3-207ENST00000485780 CD2BP2O95400 341 aaKnown RBP10.8□□□□□ -0.68
SHROOM3-207ENST00000485780 ERCC3P19447 782 aa10.8□□□□□ -0.68
SHROOM3-207ENST00000485780 ADD1P35611 737 aaKnown RBP10.8□□□□□ -0.68
SHROOM3-207ENST00000485780 RGS2P41220 211 aa10.8□□□□□ -0.68
SHROOM3-207ENST00000485780 MCM2P49736 904 aa10.8□□□□□ -0.68
SHROOM3-207ENST00000485780 GHRHRQ02643 423 aa10.8□□□□□ -0.68
SHROOM3-207ENST00000485780 SCRN1Q12765 414 aa10.8□□□□□ -0.68
SHROOM3-207ENST00000485780 GPR142Q7Z601 462 aa10.8□□□□□ -0.68
SHROOM3-207ENST00000485780 TRMT44Q8IYL2 757 aaKnown RBP10.8□□□□□ -0.68
SHROOM3-207ENST00000485780 ABRAQ8N0Z2 381 aa10.8□□□□□ -0.68
SHROOM3-207ENST00000485780 CHST13Q8NET6 341 aa10.8□□□□□ -0.68
SHROOM3-207ENST00000485780 U2AF1L4Q8WU68 220 aaKnown RBP10.8□□□□□ -0.68
SHROOM3-207ENST00000485780 GTF3C6Q969F1 213 aa10.8□□□□□ -0.68
SHROOM3-207ENST00000485780 SHISA4Q96DD7 197 aa10.8□□□□□ -0.68
SHROOM3-207ENST00000485780 AGBL1Q96MI9 1066 aa10.8□□□□□ -0.68
SHROOM3-207ENST00000485780 DEFB118Q96PH6 123 aa10.8□□□□□ -0.68
SHROOM3-207ENST00000485780 LARP6Q9BRS8 491 aaKnown RBP10.8□□□□□ -0.68
SHROOM3-207ENST00000485780 RNF26Q9BY78 433 aaPredicted RBP10.8□□□□□ -0.68
SHROOM3-207ENST00000485780 RAVER2Q9HCJ3 691 aaKnown RBP10.8□□□□□ -0.68
SHROOM3-207ENST00000485780 GJD2Q9UKL4 321 aa10.8□□□□□ -0.68
SHROOM3-207ENST00000485780 RIPK3Q9Y572 518 aa10.8□□□□□ -0.68
SHROOM3-207ENST00000485780 IVNS1ABPQ9Y6Y0 642 aa10.8□□□□□ -0.68
SHROOM3-207ENST00000485780 hCG_1984214I3L0E3 225 aa10.79□□□□□ -0.68
SHROOM3-207ENST00000485780 STRNO43815 780 aa10.79□□□□□ -0.68
SHROOM3-207ENST00000485780 SGPL1O95470 568 aa10.79□□□□□ -0.68
SHROOM3-207ENST00000485780 TFRCP02786 760 aaKnown RBP10.79□□□□□ -0.68
SHROOM3-207ENST00000485780 CAPN2P17655 700 aa10.79□□□□□ -0.68
SHROOM3-207ENST00000485780 SNAP25P60880 206 aa10.79□□□□□ -0.68
SHROOM3-207ENST00000485780 GRB14Q14449 540 aa10.79□□□□□ -0.68
SHROOM3-207ENST00000485780 MORN1Q5T089 497 aa10.79□□□□□ -0.68
SHROOM3-207ENST00000485780 CPXCR1Q8N123 301 aa10.79□□□□□ -0.68
SHROOM3-207ENST00000485780 CMTR1Q8N1G2 835 aaKnown RBP10.79□□□□□ -0.68
SHROOM3-207ENST00000485780 ZNF713Q8N859 430 aaPredicted RBP10.79□□□□□ -0.68
SHROOM3-207ENST00000485780 USP6NLQ92738 828 aa10.79□□□□□ -0.68
SHROOM3-207ENST00000485780 RRP36Q96EU6 259 aaKnown RBP10.79□□□□□ -0.68
SHROOM3-207ENST00000485780 ZSCAN31Q96LW9 406 aaPredicted RBP10.79□□□□□ -0.68
SHROOM3-207ENST00000485780 PIGSQ96S52 555 aa10.79□□□□□ -0.68
SHROOM3-207ENST00000485780 AMNQ9BXJ7 453 aa10.79□□□□□ -0.68
SHROOM3-207ENST00000485780 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.79□□□□□ -0.68
SHROOM3-207ENST00000485780 SLKQ9H2G2 1235 aaPredicted RBP10.79□□□□□ -0.68
SHROOM3-207ENST00000485780 NCOA5Q9HCD5 579 aaKnown RBP10.79□□□□□ -0.68
SHROOM3-207ENST00000485780 HMX1Q9NP08 348 aaPredicted RBP10.79□□□□□ -0.68
SHROOM3-207ENST00000485780 SH2B1Q9NRF2 756 aaPredicted RBP10.79□□□□□ -0.68
SHROOM3-207ENST00000485780 RBM27Q9P2N5 1060 aaKnown RBP10.79□□□□□ -0.68
SHROOM3-207ENST00000485780 FBXO40Q9UH90 709 aa10.79□□□□□ -0.68
SHROOM3-207ENST00000485780 CCPG1Q9ULG6 757 aa10.79□□□□□ -0.68
SHROOM3-207ENST00000485780 ABCB11O95342 1321 aa10.79□□□□□ -0.68
SHROOM3-207ENST00000485780 STK36Q9NRP7 1315 aa10.79□□□□□ -0.68
SHROOM3-207ENST00000485780 DNAJC25-GNG10A0A024R161 153 aa10.78□□□□□ -0.68
SHROOM3-207ENST00000485780 SLC15A5A6NIM6 579 aa10.78□□□□□ -0.68
SHROOM3-207ENST00000485780 OPLAHO14841 1288 aa10.78□□□□□ -0.68
SHROOM3-207ENST00000485780 PRPF3O43395 683 aaKnown RBP10.78□□□□□ -0.68
SHROOM3-207ENST00000485780 FARP2O94887 1054 aaPredicted RBP10.78□□□□□ -0.68
SHROOM3-207ENST00000485780 CTDNEP1O95476 244 aa10.78□□□□□ -0.68
SHROOM3-207ENST00000485780 IGHA2P01877 340 aa10.78□□□□□ -0.68
SHROOM3-207ENST00000485780 XRCC5P13010 732 aaKnown RBP10.78□□□□□ -0.68
SHROOM3-207ENST00000485780 CCT2P78371 535 aaKnown RBP10.78□□□□□ -0.68
SHROOM3-207ENST00000485780 TRAF1Q13077 416 aa10.78□□□□□ -0.68
SHROOM3-207ENST00000485780 PLS1Q14651 629 aa10.78□□□□□ -0.68
SHROOM3-207ENST00000485780 PKN1Q16512 942 aa10.78□□□□□ -0.68
SHROOM3-207ENST00000485780 CCDC174Q6PII3 467 aa10.78□□□□□ -0.68
SHROOM3-207ENST00000485780 FBXO11Q86XK2 927 aa10.78□□□□□ -0.68
SHROOM3-207ENST00000485780 TEX2Q8IWB9 1127 aa10.78□□□□□ -0.68
SHROOM3-207ENST00000485780 RGS22Q8NE09 1264 aa10.78□□□□□ -0.68
SHROOM3-207ENST00000485780 CLEC4DQ8WXI8 215 aa10.78□□□□□ -0.68
SHROOM3-207ENST00000485780 APBA2Q99767 749 aa10.78□□□□□ -0.68
SHROOM3-207ENST00000485780 HTATIP2Q9BUP3 242 aa10.78□□□□□ -0.68
SHROOM3-207ENST00000485780 ACAD9Q9H845 621 aa10.78□□□□□ -0.68
SHROOM3-207ENST00000485780 RNF146Q9NTX7 359 aa10.78□□□□□ -0.68
SHROOM3-207ENST00000485780 NAP1L2Q9ULW6 460 aaPredicted RBP10.78□□□□□ -0.68
SHROOM3-207ENST00000485780 CTDP1Q9Y5B0 961 aaPredicted RBP10.78□□□□□ -0.68
SHROOM3-207ENST00000485780 RPTORQ8N122 1335 aa10.78□□□□□ -0.68
SHROOM3-207ENST00000485780 MCM3APO60318 1980 aa10.77□□□□□ -0.68
SHROOM3-207ENST00000485780 DHX16O60231 1041 aaKnown RBP10.77□□□□□ -0.69
SHROOM3-207ENST00000485780 HOXC6P09630 235 aa10.77□□□□□ -0.69
SHROOM3-207ENST00000485780 PRKAR2AP13861 404 aaKnown RBP10.77□□□□□ -0.69
SHROOM3-207ENST00000485780 PTPREP23469 700 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms