RNA–Protein interactions for RNA: ENST00000477836.1

SMARCB1-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 2

Gene SMARCB1, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-206ENST00000477836 MUTYHQ9UIF7 546 aa11.72□□□□□ -0.53
SMARCB1-206ENST00000477836 FAM50BQ9Y247 325 aa11.72□□□□□ -0.53
SMARCB1-206ENST00000477836 SUPT16HQ9Y5B9 1047 aaKnown RBP11.72□□□□□ -0.53
SMARCB1-206ENST00000477836 MYH8P13535 1937 aa11.72□□□□□ -0.53
SMARCB1-206ENST00000477836 BAIAP3O94812 1187 aa11.71□□□□□ -0.53
SMARCB1-206ENST00000477836 IQCF3P0C7M6 154 aa11.71□□□□□ -0.53
SMARCB1-206ENST00000477836 CYP2D6P10635 497 aa11.71□□□□□ -0.53
SMARCB1-206ENST00000477836 EEF2P13639 858 aaKnown RBP11.71□□□□□ -0.53
SMARCB1-206ENST00000477836 SMPD1P17405 629 aa11.71□□□□□ -0.53
SMARCB1-206ENST00000477836 ERVK-21P61565 698 aa11.71□□□□□ -0.53
SMARCB1-206ENST00000477836 TNNI3KQ59H18 835 aa11.71□□□□□ -0.53
SMARCB1-206ENST00000477836 RETREG2Q8NC44 543 aa11.71□□□□□ -0.53
SMARCB1-206ENST00000477836 DYNLL2Q96FJ2 89 aa11.71□□□□□ -0.53
SMARCB1-206ENST00000477836 RIOK1Q9BRS2 568 aaKnown RBP11.71□□□□□ -0.53
SMARCB1-206ENST00000477836 GOPCQ9HD26 462 aa11.71□□□□□ -0.53
SMARCB1-206ENST00000477836 SWAP70Q9UH65 585 aa11.71□□□□□ -0.53
SMARCB1-206ENST00000477836 FPGT-TNNI3KV9GXZ4 949 aa11.71□□□□□ -0.53
SMARCB1-206ENST00000477836 RRP1P56182 461 aaKnown RBP11.7□□□□□ -0.54
SMARCB1-206ENST00000477836 WDR5P61964 334 aaKnown RBP11.7□□□□□ -0.54
SMARCB1-206ENST00000477836 MTX1Q13505 466 aa11.7□□□□□ -0.54
SMARCB1-206ENST00000477836 HERC4Q5GLZ8 1057 aaPredicted RBP11.7□□□□□ -0.54
SMARCB1-206ENST00000477836 FAM47CQ5HY64 1035 aa11.7□□□□□ -0.54
SMARCB1-206ENST00000477836 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.7□□□□□ -0.54
SMARCB1-206ENST00000477836 PBXIP1Q96AQ6 731 aa11.7□□□□□ -0.54
SMARCB1-206ENST00000477836 SLF1Q9BQI6 1058 aa11.7□□□□□ -0.54
SMARCB1-206ENST00000477836 SMC4Q9NTJ3 1288 aa11.7□□□□□ -0.54
SMARCB1-206ENST00000477836 CTDP1Q9Y5B0 961 aaPredicted RBP11.7□□□□□ -0.54
SMARCB1-206ENST00000477836 TANC1Q9C0D5 1861 aa11.7□□□□□ -0.54
SMARCB1-206ENST00000477836 SIP14410 1827 aa11.7□□□□□ -0.54
SMARCB1-206ENST00000477836 MAGEB6P1A0A0J9YX57 407 aa11.69□□□□□ -0.54
SMARCB1-206ENST00000477836 LINC01553A4QN01 128 aa11.69□□□□□ -0.54
SMARCB1-206ENST00000477836 PITPNM1O00562 1244 aa11.69□□□□□ -0.54
SMARCB1-206ENST00000477836 DEFB103AP81534 67 aa11.69□□□□□ -0.54
SMARCB1-206ENST00000477836 CNTN2Q02246 1040 aa11.69□□□□□ -0.54
SMARCB1-206ENST00000477836 TMEM63BQ5T3F8 832 aa11.69□□□□□ -0.54
SMARCB1-206ENST00000477836 ERMP1Q7Z2K6 904 aa11.69□□□□□ -0.54
SMARCB1-206ENST00000477836 BMP8AQ7Z5Y6 402 aa11.69□□□□□ -0.54
SMARCB1-206ENST00000477836 SUGP1Q8IWZ8 645 aaKnown RBP11.69□□□□□ -0.54
SMARCB1-206ENST00000477836 EDAQ92838 391 aa11.69□□□□□ -0.54
SMARCB1-206ENST00000477836 ZNF512BQ96KM6 892 aaPredicted RBP11.69□□□□□ -0.54
SMARCB1-206ENST00000477836 CRBNQ96SW2 442 aa11.69□□□□□ -0.54
SMARCB1-206ENST00000477836 NUP88Q99567 741 aaPredicted RBP11.69□□□□□ -0.54
SMARCB1-206ENST00000477836 RAD9AQ99638 391 aa11.69□□□□□ -0.54
SMARCB1-206ENST00000477836 CRNKL1Q9BZJ0 848 aaKnown RBP11.69□□□□□ -0.54
SMARCB1-206ENST00000477836 RAVER2Q9HCJ3 691 aaKnown RBP11.69□□□□□ -0.54
SMARCB1-206ENST00000477836 PDGFCQ9NRA1 345 aa11.69□□□□□ -0.54
SMARCB1-206ENST00000477836 TET1Q8NFU7 2136 aa11.69□□□□□ -0.54
SMARCB1-206ENST00000477836 TECTAO75443 2155 aa11.68□□□□□ -0.54
SMARCB1-206ENST00000477836 TMEM221A6NGB7 291 aa11.68□□□□□ -0.54
SMARCB1-206ENST00000477836 M0R296 226 aa11.68□□□□□ -0.54
SMARCB1-206ENST00000477836 ZBED4O75132 1171 aa11.68□□□□□ -0.54
SMARCB1-206ENST00000477836 GNAI3P08754 354 aa11.68□□□□□ -0.54
SMARCB1-206ENST00000477836 RARSP54136 660 aaKnown RBP11.68□□□□□ -0.54
SMARCB1-206ENST00000477836 PKN1Q16512 942 aa11.68□□□□□ -0.54
SMARCB1-206ENST00000477836 ALDH1L2Q3SY69 923 aa11.68□□□□□ -0.54
SMARCB1-206ENST00000477836 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.68□□□□□ -0.54
SMARCB1-206ENST00000477836 EEPD1Q7L9B9 569 aa11.68□□□□□ -0.54
SMARCB1-206ENST00000477836 RNF135Q8IUD6 432 aa11.68□□□□□ -0.54
SMARCB1-206ENST00000477836 FBXO22Q8NEZ5 403 aa11.68□□□□□ -0.54
SMARCB1-206ENST00000477836 PPP1R13LQ8WUF5 828 aa11.68□□□□□ -0.54
SMARCB1-206ENST00000477836 SDR42E1Q8WUS8 393 aa11.68□□□□□ -0.54
SMARCB1-206ENST00000477836 ATOH1Q92858 354 aaPredicted RBP11.68□□□□□ -0.54
SMARCB1-206ENST00000477836 PABPC5Q96DU9 382 aaKnown RBP11.68□□□□□ -0.54
SMARCB1-206ENST00000477836 MRPL38Q96DV4 380 aaKnown RBP11.68□□□□□ -0.54
SMARCB1-206ENST00000477836 C17orf80Q9BSJ5 609 aa11.68□□□□□ -0.54
SMARCB1-206ENST00000477836 ANTXR1Q9H6X2 564 aa11.68□□□□□ -0.54
SMARCB1-206ENST00000477836 GPR108Q9NPR9 543 aa11.68□□□□□ -0.54
SMARCB1-206ENST00000477836 FBXO40Q9UH90 709 aa11.68□□□□□ -0.54
SMARCB1-206ENST00000477836 CTNNA3Q9UI47 895 aa11.68□□□□□ -0.54
SMARCB1-206ENST00000477836 NOB1Q9ULX3 412 aaKnown RBP11.68□□□□□ -0.54
SMARCB1-206ENST00000477836 DDX49Q9Y6V7 483 aaKnown RBP11.68□□□□□ -0.54
SMARCB1-206ENST00000477836 PNMA6EA0A0J9YXQ4 647 aa11.67□□□□□ -0.54
SMARCB1-206ENST00000477836 ATP2A1O14983 1001 aa11.67□□□□□ -0.54
SMARCB1-206ENST00000477836 GJB5O95377 273 aa11.67□□□□□ -0.54
SMARCB1-206ENST00000477836 MYL3P08590 195 aa11.67□□□□□ -0.54
SMARCB1-206ENST00000477836 BFSP2Q13515 415 aa11.67□□□□□ -0.54
SMARCB1-206ENST00000477836 PTPROQ16827 1216 aa11.67□□□□□ -0.54
SMARCB1-206ENST00000477836 IQSEC1Q6DN90 963 aa11.67□□□□□ -0.54
SMARCB1-206ENST00000477836 FAM117BQ6P1L5 589 aa11.67□□□□□ -0.54
SMARCB1-206ENST00000477836 TRIM67Q6ZTA4 783 aa11.67□□□□□ -0.54
SMARCB1-206ENST00000477836 PRPF38AQ8NAV1 312 aaKnown RBP11.67□□□□□ -0.54
SMARCB1-206ENST00000477836 CHST13Q8NET6 341 aa11.67□□□□□ -0.54
SMARCB1-206ENST00000477836 KIFC2Q96AC6 838 aa11.67□□□□□ -0.54
SMARCB1-206ENST00000477836 CCDC17Q96LX7 622 aa11.67□□□□□ -0.54
SMARCB1-206ENST00000477836 POP1Q99575 1024 aaKnown RBP11.67□□□□□ -0.54
SMARCB1-206ENST00000477836 KANSL2Q9H9L4 492 aa11.67□□□□□ -0.54
SMARCB1-206ENST00000477836 DCP1AQ9NPI6 582 aaPredicted RBP11.67□□□□□ -0.54
SMARCB1-206ENST00000477836 HOMER2Q9NSB8 354 aa11.67□□□□□ -0.54
SMARCB1-206ENST00000477836 POLR3EQ9NVU0 708 aa11.67□□□□□ -0.54
SMARCB1-206ENST00000477836 CLDND1Q9NY35 253 aa11.67□□□□□ -0.54
SMARCB1-206ENST00000477836 Q9Y3F1 56 aa11.67□□□□□ -0.54
SMARCB1-206ENST00000477836 WDR87Q6ZQQ6 2873 aa11.67□□□□□ -0.54
SMARCB1-206ENST00000477836 DMXL1Q9Y485 3027 aa11.66□□□□□ -0.54
SMARCB1-206ENST00000477836 SOWAHBA6NEL2 793 aa11.66□□□□□ -0.54
SMARCB1-206ENST00000477836 ASB14A6NK59 587 aa11.66□□□□□ -0.54
SMARCB1-206ENST00000477836 PURAQ00577 322 aaKnown RBP11.66□□□□□ -0.54
SMARCB1-206ENST00000477836 OS9Q13438 667 aaPredicted RBP11.66□□□□□ -0.54
SMARCB1-206ENST00000477836 CLUL1Q15846 466 aa11.66□□□□□ -0.54
SMARCB1-206ENST00000477836 NBPF20Q3BBV1 942 aa11.66□□□□□ -0.54
SMARCB1-206ENST00000477836 TIGD5Q53EQ6 642 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms