RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 TTBK2Q6IQ55 1244 aa14.48□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 TAPT1Q6NXT6 567 aa14.48□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 PLEKHM2Q8IWE5 1019 aa14.48□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 TTC14Q96N46 770 aa14.48□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 DCDC2CA8MYV0 355 aa14.47□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 ARVCFO00192 962 aa14.47□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 TIMP1P01033 207 aa14.47□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 IGHDP01880 384 aa14.47□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 TOP1P11387 765 aaKnown RBP14.47□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 PCP11498 1178 aaKnown RBP14.47□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 ALAS1P13196 640 aa14.47□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 RAG1P15918 1043 aa14.47□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 GNASQ5JWF2 1037 aa14.47□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 CHMP4CQ96CF2 233 aa14.47□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 GLT1D1Q96MS3 346 aa14.47□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 LNPKQ9C0E8 428 aa14.47□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 SEMA6BQ9H3T3 888 aa14.47□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 TMEM39AQ9NV64 488 aa14.47□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 ZBTB47Q9UFB7 747 aaPredicted RBP14.47□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 MYO9BQ13459 2157 aa14.47□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 MROH7Q68CQ1 1323 aa14.46□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 CCDC171Q6TFL3 1326 aa14.46□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 VCANP13611 3396 aa14.46□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 CD4P01730 458 aa14.46□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 PDHBP11177 359 aa14.46□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 SDSP20132 328 aa14.46□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 NUCB1Q02818 461 aa14.46□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 TNFAIP2Q03169 654 aa14.46□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 AKNAD1Q5T1N1 836 aa14.46□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 IQSEC1Q6DN90 963 aa14.46□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 CCDC174Q6PII3 467 aa14.46□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 C16orf59Q7L2K0 433 aa14.46□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 FAM126BQ8IXS8 530 aa14.46□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 TTYH1Q9H313 450 aaPredicted RBP14.46□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 SPC25Q9HBM1 224 aa14.46□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 Q9Y3F1 56 aa14.46□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 DDX49Q9Y6V7 483 aaKnown RBP14.46□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 GRIN2DO15399 1336 aa14.45□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 LOC102724159A0A0B4J2E5 919 aa14.45□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 A0A0U1RQG5 324 aaPredicted RBP14.45□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 SMPD1P17405 629 aa14.45□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 SLC16A2P36021 539 aa14.45□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 FPGSQ05932 587 aa14.45□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 IKQ13123 557 aaPredicted RBP14.45□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 PWP2Q15269 919 aaKnown RBP14.45□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 TMEM63BQ5T3F8 832 aa14.45□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 RASIP1Q5U651 963 aa14.45□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 SYDE2Q5VT97 1194 aa14.45□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 MFSD5Q6N075 450 aa14.45□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 CHD1LQ86WJ1 897 aa14.45□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 TBC1D10CQ8IV04 446 aa14.45□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 CLEC4DQ8WXI8 215 aa14.45□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 PURBQ96QR8 312 aaKnown RBP14.45□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 RWDD1Q9H446 243 aaPredicted RBP14.45□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 PDGFCQ9NRA1 345 aa14.45□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 CCPG1Q9ULG6 757 aa14.45□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 CHD9Q3L8U1 2897 aa14.44□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 LAMA4Q16363 1823 aa14.44□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 RBM47A0AV96 593 aaKnown RBP14.44□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 DLL1O00548 723 aa14.44□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 PTGS1P23219 599 aa14.44□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 HAND2P61296 217 aa14.44□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 BEX3Q00994 111 aa14.44□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 ZNF543Q08ER8 600 aa14.44□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 ZNF697Q5TEC3 545 aa14.44□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 ANKS1AQ92625 1134 aa14.44□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 CDX2Q99626 313 aaPredicted RBP14.44□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 TMEM265A0A087WTH1 108 aa14.43□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 TRIM6-TRIM34B2RNG4 842 aa14.43□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 NFIBO00712 420 aa14.43□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 CABYRO75952 493 aa14.43□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 NT5C2P49902 561 aa14.43□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 BAATQ14032 418 aaPredicted RBP14.43□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 CCDC96Q2M329 555 aa14.43□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 RRP12Q5JTH9 1297 aaKnown RBP14.43□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 TMEM240Q5SV17 173 aa14.43□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 MFSD6Q6ZSS7 791 aa14.43□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 TLK2Q86UE8 772 aa14.43□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 RNPC3Q96LT9 517 aaKnown RBP14.43□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 FAM161BQ96MY7 647 aa14.43□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 VTA1Q9NP79 307 aa14.43□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 ISY1Q9ULR0 285 aaKnown RBP14.43□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 WDR19Q8NEZ3 1342 aa14.42□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 SCN10AQ9Y5Y9 1956 aa14.42□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 ALDH5A1P51649 535 aaPredicted RBP14.42□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 FSCN1Q16658 493 aaKnown RBP14.42□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 DUSP28Q4G0W2 176 aa14.42□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 B4GALNT3Q6L9W6 998 aa14.42□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 CXCL17Q6UXB2 119 aa14.42□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 NSMFQ6X4W1 530 aa14.42□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 DGKHQ86XP1 1220 aa14.42□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 FBXO16Q8IX29 292 aaPredicted RBP14.42□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 RILPL2Q969X0 211 aa14.42□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.42□□□□□ -0.13e-6■■■■□ 20.3
MSH5-SAPCD1-205ENST00000476085 SEZ6LQ9BYH1 1024 aa14.42□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 GPCPD1Q9NPB8 672 aa14.42□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 TOMM22Q9NS69 142 aa14.42□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 PNMA2Q9UL42 364 aa14.42□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 MTMR7Q9Y216 660 aa14.42□□□□□ -0.1
MSH5-SAPCD1-205ENST00000476085 NEDD4P46934 1319 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms