RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 ZNF543Q08ER8 600 aa19.63■□□□□ 0.73
USP40-212ENST00000473191 TTC22Q5TAA0 569 aa19.63■□□□□ 0.73
USP40-212ENST00000473191 NSMFQ6X4W1 530 aa19.63■□□□□ 0.73
USP40-212ENST00000473191 Q7L0L9 218 aa19.63■□□□□ 0.73
USP40-212ENST00000473191 EEPD1Q7L9B9 569 aa19.63■□□□□ 0.73
USP40-212ENST00000473191 BADQ92934 168 aa19.63■□□□□ 0.73
USP40-212ENST00000473191 ABHD16BQ9H3Z7 469 aa19.63■□□□□ 0.73
USP40-212ENST00000473191 PDGFCQ9NRA1 345 aa19.63■□□□□ 0.73
USP40-212ENST00000473191 DUSP11O75319 330 aaKnown RBP19.62■□□□□ 0.73
USP40-212ENST00000473191 ACLYP53396 1101 aa19.62■□□□□ 0.73
USP40-212ENST00000473191 MFAP1P55081 439 aaKnown RBP19.62■□□□□ 0.73
USP40-212ENST00000473191 TKFCQ3LXA3 575 aa19.62■□□□□ 0.73
USP40-212ENST00000473191 LRIT3Q3SXY7 679 aa19.62■□□□□ 0.73
USP40-212ENST00000473191 C1orf53Q5VUE5 145 aa19.62■□□□□ 0.73
USP40-212ENST00000473191 TTC14Q96N46 770 aa19.62■□□□□ 0.73
USP40-212ENST00000473191 DSCC1Q9BVC3 393 aa19.62■□□□□ 0.73
USP40-212ENST00000473191 PQBP1O60828 265 aaKnown RBP19.61■□□□□ 0.73
USP40-212ENST00000473191 C6orf222P0C671 652 aaPredicted RBP19.61■□□□□ 0.73
USP40-212ENST00000473191 BEX3Q00994 111 aa19.61■□□□□ 0.73
USP40-212ENST00000473191 BAATQ14032 418 aaPredicted RBP19.61■□□□□ 0.73
USP40-212ENST00000473191 C9orf50Q5SZB4 431 aa19.61■□□□□ 0.73
USP40-212ENST00000473191 FBXO16Q8IX29 292 aaPredicted RBP19.61■□□□□ 0.73
USP40-212ENST00000473191 CLEC4DQ8WXI8 215 aa19.61■□□□□ 0.73
USP40-212ENST00000473191 ESR2Q92731 530 aa19.61■□□□□ 0.73
USP40-212ENST00000473191 LBHD1Q9BQE6 289 aaPredicted RBP19.61■□□□□ 0.73
USP40-212ENST00000473191 UBA5Q9GZZ9 404 aa19.61■□□□□ 0.73
USP40-212ENST00000473191 RNF41Q9H4P4 317 aaPredicted RBP19.61■□□□□ 0.73
USP40-212ENST00000473191 ZSWIM5Q9P217 1185 aa19.61■□□□□ 0.73
USP40-212ENST00000473191 PCP11498 1178 aaKnown RBP19.6■□□□□ 0.73
USP40-212ENST00000473191 SLC30A10Q6XR72 485 aa19.6■□□□□ 0.73
USP40-212ENST00000473191 UPF3AQ9H1J1 476 aaKnown RBP19.6■□□□□ 0.73
USP40-212ENST00000473191 STARD7Q9NQZ5 370 aa19.6■□□□□ 0.73
USP40-212ENST00000473191 PRKAG2Q9UGJ0 569 aa19.6■□□□□ 0.73
USP40-212ENST00000473191 HIP1O00291 1037 aa19.59■□□□□ 0.73
USP40-212ENST00000473191 ASGR1P07306 291 aa19.59■□□□□ 0.73
USP40-212ENST00000473191 SMPD1P17405 629 aa19.59■□□□□ 0.73
USP40-212ENST00000473191 GJA9P57773 515 aa19.59■□□□□ 0.73
USP40-212ENST00000473191 PTH1RQ03431 593 aa19.59■□□□□ 0.73
USP40-212ENST00000473191 SHHQ15465 462 aa19.59■□□□□ 0.73
USP40-212ENST00000473191 TAPT1Q6NXT6 567 aa19.59■□□□□ 0.73
USP40-212ENST00000473191 ENAHQ8N8S7 591 aaPredicted RBP19.59■□□□□ 0.73
USP40-212ENST00000473191 TSEN34Q9BSV6 310 aaKnown RBP19.59■□□□□ 0.73
USP40-212ENST00000473191 GNEQ9Y223 722 aaKnown RBP19.59■□□□□ 0.73
USP40-212ENST00000473191 TAF6LQ9Y6J9 622 aa19.59■□□□□ 0.73
USP40-212ENST00000473191 LAMA2P24043 3122 aaKnown RBP19.59■□□□□ 0.73
USP40-212ENST00000473191 CLTBP09497 229 aa19.58■□□□□ 0.72
USP40-212ENST00000473191 CST5P28325 142 aaPredicted RBP19.58■□□□□ 0.72
USP40-212ENST00000473191 EPHB4P54760 987 aa19.58■□□□□ 0.72
USP40-212ENST00000473191 TNFAIP2Q03169 654 aa19.58■□□□□ 0.72
USP40-212ENST00000473191 FAAP100Q0VG06 881 aa19.58■□□□□ 0.72
USP40-212ENST00000473191 IMMTQ16891 758 aaKnown RBP19.58■□□□□ 0.72
USP40-212ENST00000473191 CYB5R4Q7L1T6 521 aa19.58■□□□□ 0.72
USP40-212ENST00000473191 DGKHQ86XP1 1220 aa19.58■□□□□ 0.72
USP40-212ENST00000473191 PNMA1Q8ND90 353 aa19.58■□□□□ 0.72
USP40-212ENST00000473191 ZSCAN10Q96SZ4 725 aaPredicted RBP19.58■□□□□ 0.72
USP40-212ENST00000473191 TNKSO95271 1327 aa19.57■□□□□ 0.72
USP40-212ENST00000473191 PTPDC1A2A3K4 754 aa19.57■□□□□ 0.72
USP40-212ENST00000473191 ASB14A6NK59 587 aa19.57■□□□□ 0.72
USP40-212ENST00000473191 USH1GQ495M9 461 aa19.57■□□□□ 0.72
USP40-212ENST00000473191 GNASQ5JWF2 1037 aa19.57■□□□□ 0.72
USP40-212ENST00000473191 SKAP1Q86WV1 359 aa19.57■□□□□ 0.72
USP40-212ENST00000473191 TBC1D5Q92609 795 aa19.57■□□□□ 0.72
USP40-212ENST00000473191 ANKS1AQ92625 1134 aa19.57■□□□□ 0.72
USP40-212ENST00000473191 COL6A3P12111 3177 aa19.56■□□□□ 0.72
USP40-212ENST00000473191 MOXD2PA6NHM9 499 aa19.56■□□□□ 0.72
USP40-212ENST00000473191 CHMLP26374 656 aa19.56■□□□□ 0.72
USP40-212ENST00000473191 CALML3P27482 149 aa19.56■□□□□ 0.72
USP40-212ENST00000473191 ALDH5A1P51649 535 aaPredicted RBP19.56■□□□□ 0.72
USP40-212ENST00000473191 NOL8Q76FK4 1167 aaKnown RBP19.56■□□□□ 0.72
USP40-212ENST00000473191 ANKRD33Q7Z3H0 272 aa19.56■□□□□ 0.72
USP40-212ENST00000473191 TLK2Q86UE8 772 aa19.56■□□□□ 0.72
USP40-212ENST00000473191 DEFB123Q8N688 67 aa19.56■□□□□ 0.72
USP40-212ENST00000473191 MORC4Q8TE76 937 aa19.56■□□□□ 0.72
USP40-212ENST00000473191 CDK7P50613 346 aa19.55■□□□□ 0.72
USP40-212ENST00000473191 RPS6P62753 249 aaKnown RBP19.55■□□□□ 0.72
USP40-212ENST00000473191 NKX3-2P78367 333 aa19.55■□□□□ 0.72
USP40-212ENST00000473191 IQCA1Q86XH1 822 aa19.55■□□□□ 0.72
USP40-212ENST00000473191 STAG2Q8N3U4 1231 aa19.55■□□□□ 0.72
USP40-212ENST00000473191 NUP133Q8WUM0 1156 aa19.55■□□□□ 0.72
USP40-212ENST00000473191 SENP2Q9HC62 589 aa19.55■□□□□ 0.72
USP40-212ENST00000473191 KIAA0355O15063 1070 aa19.54■□□□□ 0.72
USP40-212ENST00000473191 DYNC1LI2O43237 492 aaPredicted RBP19.54■□□□□ 0.72
USP40-212ENST00000473191 CYP21A2P08686 494 aa19.54■□□□□ 0.72
USP40-212ENST00000473191 CDC37Q16543 378 aaPredicted RBP19.54■□□□□ 0.72
USP40-212ENST00000473191 CXCL17Q6UXB2 119 aa19.54■□□□□ 0.72
USP40-212ENST00000473191 RNF207Q6ZRF8 634 aa19.54■□□□□ 0.72
USP40-212ENST00000473191 ADGRF4Q8IZF3 695 aa19.54■□□□□ 0.72
USP40-212ENST00000473191 VTI1AQ96AJ9 217 aa19.54■□□□□ 0.72
USP40-212ENST00000473191 GLT1D1Q96MS3 346 aa19.54■□□□□ 0.72
USP40-212ENST00000473191 KAT14Q9H8E8 782 aa19.54■□□□□ 0.72
USP40-212ENST00000473191 TMEM39AQ9NV64 488 aa19.54■□□□□ 0.72
USP40-212ENST00000473191 CTNNA3Q9UI47 895 aa19.54■□□□□ 0.72
USP40-212ENST00000473191 GRIN2DO15399 1336 aa19.53■□□□□ 0.72
USP40-212ENST00000473191 SEC23AQ15436 765 aa19.53■□□□□ 0.72
USP40-212ENST00000473191 GPATCH4Q5T3I0 446 aaKnown RBP19.53■□□□□ 0.72
USP40-212ENST00000473191 KIAA1211Q6ZU35 1233 aa19.53■□□□□ 0.72
USP40-212ENST00000473191 PCSK9Q8NBP7 692 aaKnown RBP19.53■□□□□ 0.72
USP40-212ENST00000473191 SPC25Q9HBM1 224 aa19.53■□□□□ 0.72
USP40-212ENST00000473191 ELP1O95163 1332 aa19.52■□□□□ 0.72
USP40-212ENST00000473191 WDR19Q8NEZ3 1342 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms