RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 IARSP41252 1262 aaKnown RBP5.98□□□□□ -1.45
SYNE1-220ENST00000471834 NFIL3Q16649 462 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 SLC35G1Q2M3R5 365 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 VTI1AQ96AJ9 217 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 ACSBG1Q96GR2 724 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 ZNF233A6NK53 670 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 GSG1L2A8MUP6 293 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 IFIT3O14879 490 aaKnown RBP5.98□□□□□ -1.45
SYNE1-220ENST00000471834 COPB1P53618 953 aaKnown RBP5.98□□□□□ -1.45
SYNE1-220ENST00000471834 ATP2B2Q01814 1243 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 ITGB3BPQ13352 177 aaPredicted RBP5.98□□□□□ -1.45
SYNE1-220ENST00000471834 SGSM1Q2NKQ1 1148 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 GALNTL6Q49A17 601 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 LMBR1LQ6UX01 489 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 SRBD1Q8N5C6 995 aaKnown RBP5.98□□□□□ -1.45
SYNE1-220ENST00000471834 SH2D4AQ9H788 454 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 GNL3LQ9NVN8 582 aaKnown RBP5.98□□□□□ -1.45
SYNE1-220ENST00000471834 SAR1BQ9Y6B6 198 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 TP73O15350 636 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 EDIL3O43854 480 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 ALAS1P13196 640 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 MMP13P45452 471 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 RBM5P52756 815 aaKnown RBP eCLIP5.98□□□□□ -1.45
SYNE1-220ENST00000471834 TCIRG1Q13488 830 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 BIRC3Q13489 604 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 MAP9Q49MG5 647 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 ODF2Q5BJF6 829 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 AGBL2Q5U5Z8 902 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 COPS6Q7L5N1 327 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 SPATA4Q8NEY3 305 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 ZNF219Q9P2Y4 722 aaPredicted RBP5.98□□□□□ -1.45
SYNE1-220ENST00000471834 WNT7AO00755 349 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 SCARF1Q14162 830 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 ARFGAP2Q8N6H7 521 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 KLHDC4Q8TBB5 520 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 WHAMMQ8TF30 809 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.97□□□□□ -1.45
SYNE1-220ENST00000471834 MROH7Q68CQ1 1323 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 PPP1R3FQ6ZSY5 799 aaPredicted RBP5.97□□□□□ -1.45
SYNE1-220ENST00000471834 LARGE2Q8N3Y3 721 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 GUF1Q8N442 669 aaKnown RBP5.97□□□□□ -1.45
SYNE1-220ENST00000471834 PRDM11Q9NQV5 511 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 ARHGAP20Q9P2F6 1191 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 SHANK3Q9BYB0 1731 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 PBKQ96KB5 322 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 PUS7LQ9H0K6 701 aaKnown RBP5.97□□□□□ -1.45
SYNE1-220ENST00000471834 INTUQ9ULD6 942 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 PRAMEF22A3QJZ6 481 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 BTBD18B2RXH4 712 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 PPFIA2O75334 1257 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 BAG3O95817 575 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 IBSPP21815 317 aaPredicted RBP5.97□□□□□ -1.45
SYNE1-220ENST00000471834 RBL2Q08999 1139 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 ZNF658Q5TYW1 1059 aaPredicted RBP5.97□□□□□ -1.45
SYNE1-220ENST00000471834 NAA35Q5VZE5 725 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 GALNT17Q6IS24 598 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 IFNL2Q8IZJ0 200 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 CRYGNQ8WXF5 182 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 C8orf37Q96NL8 207 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 SELENOOQ9BVL4 669 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 SCN7AQ01118 1682 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 A0A087WWV3 80 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 WFS1O76024 890 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 IL1BP01584 269 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 LONP1P36776 959 aaKnown RBP5.97□□□□□ -1.45
SYNE1-220ENST00000471834 NEDD9Q14511 834 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 SAFBQ15424 915 aaKnown RBP eCLIP5.97□□□□□ -1.45
SYNE1-220ENST00000471834 UAP1Q16222 522 aaPredicted RBP5.97□□□□□ -1.45
SYNE1-220ENST00000471834 RALYLQ86SE5 291 aaKnown RBP5.97□□□□□ -1.45
SYNE1-220ENST00000471834 DGKHQ86XP1 1220 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 LRRC15Q8TF66 581 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 C7orf25Q9BPX7 421 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 C17orf75Q9HAS0 396 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 CNNM1Q9NRU3 951 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 AIPL1Q9NZN9 384 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 ANKIB1Q9P2G1 1089 aa5.97□□□□□ -1.45
SYNE1-220ENST00000471834 BTBD11A6QL63 1104 aa5.96□□□□□ -1.45
SYNE1-220ENST00000471834 HMGB1P1B2RPK0 211 aaPredicted RBP5.96□□□□□ -1.45
SYNE1-220ENST00000471834 KIF5CO60282 957 aa5.96□□□□□ -1.45
SYNE1-220ENST00000471834 PDE6AP16499 860 aa5.96□□□□□ -1.45
SYNE1-220ENST00000471834 KRT83P78385 493 aa5.96□□□□□ -1.45
SYNE1-220ENST00000471834 CFAP100Q494V2 611 aa5.96□□□□□ -1.45
SYNE1-220ENST00000471834 AKNAD1Q5T1N1 836 aa5.96□□□□□ -1.45
SYNE1-220ENST00000471834 TOM1L2Q6ZVM7 507 aa5.96□□□□□ -1.45
SYNE1-220ENST00000471834 CCDC91Q7Z6B0 441 aa5.96□□□□□ -1.45
SYNE1-220ENST00000471834 TRIM58Q8NG06 486 aa5.96□□□□□ -1.45
SYNE1-220ENST00000471834 AFAP1L1Q8TED9 768 aa5.96□□□□□ -1.45
SYNE1-220ENST00000471834 ZKSCAN4Q969J2 545 aaPredicted RBP5.96□□□□□ -1.45
SYNE1-220ENST00000471834 EPN3Q9H201 632 aa5.96□□□□□ -1.45
SYNE1-220ENST00000471834 CTAGE9A4FU28 777 aa5.96□□□□□ -1.45
SYNE1-220ENST00000471834 ERVV-1B6SEH8 477 aa5.96□□□□□ -1.45
SYNE1-220ENST00000471834 IMMTQ16891 758 aaKnown RBP5.96□□□□□ -1.45
SYNE1-220ENST00000471834 EP400NLQ6ZTU2 488 aa5.96□□□□□ -1.45
SYNE1-220ENST00000471834 TMTC3Q6ZXV5 915 aa5.96□□□□□ -1.45
SYNE1-220ENST00000471834 ANKLE1Q8NAG6 615 aa5.96□□□□□ -1.45
SYNE1-220ENST00000471834 FANCBQ8NB91 859 aa5.96□□□□□ -1.45
SYNE1-220ENST00000471834 TBC1D16Q8TBP0 767 aa5.96□□□□□ -1.45
SYNE1-220ENST00000471834 ACTRT1Q8TDG2 376 aa5.96□□□□□ -1.45
SYNE1-220ENST00000471834 CCDC12Q8WUD4 166 aaPredicted RBP5.96□□□□□ -1.45
SYNE1-220ENST00000471834 MAGEC2Q9UBF1 373 aaPredicted RBP5.96□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms