RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 SEC31AO94979 1220 aaKnown RBP21.47■■□□□ 1.03
VIM-203ENST00000469543 NFIAQ12857 509 aa21.47■■□□□ 1.03
VIM-203ENST00000469543 TMED8Q6PL24 325 aaPredicted RBP21.47■■□□□ 1.03
VIM-203ENST00000469543 NUDT12Q9BQG2 462 aa21.47■■□□□ 1.03
VIM-203ENST00000469543 RMND1Q9NWS8 449 aa21.47■■□□□ 1.03
VIM-203ENST00000469543 TRIM10Q9UDY6 481 aa21.47■■□□□ 1.03
VIM-203ENST00000469543 GAKO14976 1311 aa21.46■■□□□ 1.03
VIM-203ENST00000469543 ADRA2BP18089 450 aa21.46■■□□□ 1.03
VIM-203ENST00000469543 UBE2SQ16763 222 aa21.46■■□□□ 1.03
VIM-203ENST00000469543 SOGA3Q5TF21 947 aa21.46■■□□□ 1.03
VIM-203ENST00000469543 GPIHBP1Q8IV16 184 aa21.46■■□□□ 1.03
VIM-203ENST00000469543 REXO1Q8N1G1 1221 aaKnown RBP21.46■■□□□ 1.03
VIM-203ENST00000469543 FAM163AQ96GL9 167 aaPredicted RBP21.46■■□□□ 1.03
VIM-203ENST00000469543 SLF1Q9BQI6 1058 aa21.46■■□□□ 1.03
VIM-203ENST00000469543 CCSER1Q9C0I3 900 aa21.46■■□□□ 1.03
VIM-203ENST00000469543 PODXL2Q9NZ53 605 aa21.46■■□□□ 1.03
VIM-203ENST00000469543 TTC26A0AVF1 554 aa21.46■■□□□ 1.03
VIM-203ENST00000469543 SMAP1Q8IYB5 467 aaPredicted RBP21.46■■□□□ 1.03
VIM-203ENST00000469543 TRIM47Q96LD4 638 aa21.46■■□□□ 1.03
VIM-203ENST00000469543 MRFAP1Q9Y605 127 aa21.46■■□□□ 1.03
VIM-203ENST00000469543 POTEMA6NI47 508 aa21.45■■□□□ 1.02
VIM-203ENST00000469543 PPEF1O14829 653 aaPredicted RBP21.45■■□□□ 1.02
VIM-203ENST00000469543 PDE4DQ08499 809 aa21.45■■□□□ 1.02
VIM-203ENST00000469543 ZNF569Q5MCW4 686 aa21.45■■□□□ 1.02
VIM-203ENST00000469543 KCTD1Q719H9 257 aa21.45■■□□□ 1.02
VIM-203ENST00000469543 TRIM9Q9C026 710 aa21.45■■□□□ 1.02
VIM-203ENST00000469543 PPP1R11O60927 126 aaPredicted RBP21.45■■□□□ 1.02
VIM-203ENST00000469543 GNA11P29992 359 aa21.45■■□□□ 1.02
VIM-203ENST00000469543 HOXA10P31260 410 aaPredicted RBP21.45■■□□□ 1.02
VIM-203ENST00000469543 ANKRD40Q6AI12 368 aa21.45■■□□□ 1.02
VIM-203ENST00000469543 GALNT17Q6IS24 598 aa21.45■■□□□ 1.02
VIM-203ENST00000469543 DYMQ7RTS9 669 aa21.45■■□□□ 1.02
VIM-203ENST00000469543 GIMAP8Q8ND71 665 aaPredicted RBP21.45■■□□□ 1.02
VIM-203ENST00000469543 USP40Q9NVE5 1235 aa21.45■■□□□ 1.02
VIM-203ENST00000469543 B4DLN1 442 aa21.44■■□□□ 1.02
VIM-203ENST00000469543 MPHOSPH10O00566 681 aaKnown RBP21.44■■□□□ 1.02
VIM-203ENST00000469543 TUBB4AP04350 444 aa21.44■■□□□ 1.02
VIM-203ENST00000469543 PLCG2P16885 1265 aa21.44■■□□□ 1.02
VIM-203ENST00000469543 TCP10Q12799 353 aa21.44■■□□□ 1.02
VIM-203ENST00000469543 TEX35Q5T0J7 233 aa21.44■■□□□ 1.02
VIM-203ENST00000469543 CNGA4Q8IV77 575 aa21.44■■□□□ 1.02
VIM-203ENST00000469543 LZTS2Q9BRK4 669 aa21.44■■□□□ 1.02
VIM-203ENST00000469543 PYM1Q9BRP8 204 aaKnown RBP21.44■■□□□ 1.02
VIM-203ENST00000469543 SLC39A2Q9NP94 309 aa21.44■■□□□ 1.02
VIM-203ENST00000469543 PUF60Q9UHX1 559 aaKnown RBP21.44■■□□□ 1.02
VIM-203ENST00000469543 ONECUT3O60422 494 aaPredicted RBP21.44■■□□□ 1.02
VIM-203ENST00000469543 RHOBTB3O94955 611 aa21.44■■□□□ 1.02
VIM-203ENST00000469543 HSPA1LP34931 641 aa21.44■■□□□ 1.02
VIM-203ENST00000469543 ASIC1P78348 528 aa21.44■■□□□ 1.02
VIM-203ENST00000469543 PPP2R3AQ06190 1150 aa21.44■■□□□ 1.02
VIM-203ENST00000469543 KRT25Q7Z3Z0 450 aa21.44■■□□□ 1.02
VIM-203ENST00000469543 DUSP9Q99956 384 aaKnown RBP21.44■■□□□ 1.02
VIM-203ENST00000469543 ZC3H12CQ9C0D7 883 aaKnown RBP21.44■■□□□ 1.02
VIM-203ENST00000469543 RIOX1Q9H6W3 641 aa21.44■■□□□ 1.02
VIM-203ENST00000469543 ZNF219Q9P2Y4 722 aaPredicted RBP21.44■■□□□ 1.02
VIM-203ENST00000469543 MYH1P12882 1939 aa21.44■■□□□ 1.02
VIM-203ENST00000469543 H7C1D1 291 aa21.43■■□□□ 1.02
VIM-203ENST00000469543 GABPAQ06546 454 aa21.43■■□□□ 1.02
VIM-203ENST00000469543 TTI2Q6NXR4 508 aa21.43■■□□□ 1.02
VIM-203ENST00000469543 QTRT2Q9H974 415 aaKnown RBP21.43■■□□□ 1.02
VIM-203ENST00000469543 AGPAT5Q9NUQ2 364 aa21.43■■□□□ 1.02
VIM-203ENST00000469543 CSGALNACT2Q8N6G5 542 aa21.43■■□□□ 1.02
VIM-203ENST00000469543 DBNDD1Q9H9R9 158 aa21.43■■□□□ 1.02
VIM-203ENST00000469543 MB21D1Q8N884 522 aa21.42■■□□□ 1.02
VIM-203ENST00000469543 GLIS3Q8NEA6 775 aa21.42■■□□□ 1.02
VIM-203ENST00000469543 TBC1D22AQ8WUA7 517 aa21.42■■□□□ 1.02
VIM-203ENST00000469543 ZHX1Q9UKY1 873 aaPredicted RBP21.42■■□□□ 1.02
VIM-203ENST00000469543 SPATA31A6Q5VVP1 1343 aa21.42■■□□□ 1.02
VIM-203ENST00000469543 PRPHP41219 470 aa21.42■■□□□ 1.02
VIM-203ENST00000469543 ADGRF4Q8IZF3 695 aa21.42■■□□□ 1.02
VIM-203ENST00000469543 JMJD4Q9H9V9 463 aa21.42■■□□□ 1.02
VIM-203ENST00000469543 GOLGA6L9A6NEM1 432 aa21.42■■□□□ 1.02
VIM-203ENST00000469543 ZBTB22O15209 634 aa21.42■■□□□ 1.02
VIM-203ENST00000469543 TNNI2P48788 182 aa21.42■■□□□ 1.02
VIM-203ENST00000469543 MCM6Q14566 821 aa21.42■■□□□ 1.02
VIM-203ENST00000469543 KCNK18Q7Z418 384 aa21.42■■□□□ 1.02
VIM-203ENST00000469543 CRAMP1Q96RY5 1269 aa21.42■■□□□ 1.02
VIM-203ENST00000469543 SERPINB13Q9UIV8 391 aa21.42■■□□□ 1.02
VIM-203ENST00000469543 FHOD1Q9Y613 1164 aa21.42■■□□□ 1.02
VIM-203ENST00000469543 UBR3Q6ZT12 1888 aa21.41■■□□□ 1.02
VIM-203ENST00000469543 EFCAB8A8MWE9 144 aa21.41■■□□□ 1.02
VIM-203ENST00000469543 PSMA7O14818 248 aa21.41■■□□□ 1.02
VIM-203ENST00000469543 MSL1Q68DK7 614 aa21.41■■□□□ 1.02
VIM-203ENST00000469543 CDC42EP5Q6NZY7 148 aa21.41■■□□□ 1.02
VIM-203ENST00000469543 SLC35F6Q8N357 371 aa21.41■■□□□ 1.02
VIM-203ENST00000469543 KIAA0895Q8NCT3 520 aa21.41■■□□□ 1.02
VIM-203ENST00000469543 ANKRD20A12PQ8NF67 263 aa21.41■■□□□ 1.02
VIM-203ENST00000469543 ITIH6Q6UXX5 1313 aa21.41■■□□□ 1.02
VIM-203ENST00000469543 USP17L10C9JJH3 530 aa21.41■■□□□ 1.02
VIM-203ENST00000469543 KCNB1Q14721 858 aa21.41■■□□□ 1.02
VIM-203ENST00000469543 SP8Q8IXZ3 490 aa21.41■■□□□ 1.02
VIM-203ENST00000469543 ZNF507Q8TCN5 953 aa21.41■■□□□ 1.02
VIM-203ENST00000469543 REXO2Q9Y3B8 237 aaKnown RBP21.41■■□□□ 1.02
VIM-203ENST00000469543 ATP6V0A2Q9Y487 856 aa21.41■■□□□ 1.02
VIM-203ENST00000469543 RASSF10A6NK89 507 aa21.4■■□□□ 1.02
VIM-203ENST00000469543 LAD1O00515 517 aa21.4■■□□□ 1.02
VIM-203ENST00000469543 SHMT1P34896 483 aa21.4■■□□□ 1.02
VIM-203ENST00000469543 GRB10Q13322 594 aa21.4■■□□□ 1.02
VIM-203ENST00000469543 ECM1Q16610 540 aa21.4■■□□□ 1.02
VIM-203ENST00000469543 KIAA0825Q8IV33 1275 aa21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms