RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 PWWP2AQ96N64 755 aa6.9□□□□□ -1.3
CCDC88A-210ENST00000468534 TM9SF2Q99805 663 aa6.9□□□□□ -1.3
CCDC88A-210ENST00000468534 NOL6Q9H6R4 1146 aaKnown RBP6.9□□□□□ -1.3
CCDC88A-210ENST00000468534 GP6Q9HCN6 339 aa6.9□□□□□ -1.3
CCDC88A-210ENST00000468534 A0A1W2PQJ5 194 aa6.89□□□□□ -1.31
CCDC88A-210ENST00000468534 BUB1BO60566 1050 aaPredicted RBP6.89□□□□□ -1.31
CCDC88A-210ENST00000468534 HLA-DQA1Q5Y7H0 255 aa6.89□□□□□ -1.31
CCDC88A-210ENST00000468534 ZC3H14Q6PJT7 736 aaKnown RBP6.89□□□□□ -1.31
CCDC88A-210ENST00000468534 UNC5AQ6ZN44 842 aa6.89□□□□□ -1.31
CCDC88A-210ENST00000468534 CCDC81Q6ZN84 652 aa6.89□□□□□ -1.31
CCDC88A-210ENST00000468534 ZDHHC14Q8IZN3 488 aa6.89□□□□□ -1.31
CCDC88A-210ENST00000468534 FIBCD1Q8N539 461 aa6.89□□□□□ -1.31
CCDC88A-210ENST00000468534 SYT8Q8NBV8 401 aa6.89□□□□□ -1.31
CCDC88A-210ENST00000468534 SMARCC1Q92922 1105 aaPredicted RBP6.89□□□□□ -1.31
CCDC88A-210ENST00000468534 ZDHHC15Q96MV8 337 aa6.89□□□□□ -1.31
CCDC88A-210ENST00000468534 ZNF451Q9Y4E5 1061 aa6.89□□□□□ -1.31
CCDC88A-210ENST00000468534 PCDHA5Q9Y5H7 936 aa6.89□□□□□ -1.31
CCDC88A-210ENST00000468534 OTOL1A6NHN0 477 aaPredicted RBP6.88□□□□□ -1.31
CCDC88A-210ENST00000468534 FOXD2O60548 495 aaPredicted RBP6.88□□□□□ -1.31
CCDC88A-210ENST00000468534 CD3EP07766 207 aa6.88□□□□□ -1.31
CCDC88A-210ENST00000468534 IFNGR1P15260 489 aa6.88□□□□□ -1.31
CCDC88A-210ENST00000468534 CD247P20963 164 aa6.88□□□□□ -1.31
CCDC88A-210ENST00000468534 GUCY2CP25092 1073 aa6.88□□□□□ -1.31
CCDC88A-210ENST00000468534 TACR1P25103 407 aa6.88□□□□□ -1.31
CCDC88A-210ENST00000468534 LIMS1P48059 325 aa6.88□□□□□ -1.31
CCDC88A-210ENST00000468534 PPP2R5DQ14738 602 aa6.88□□□□□ -1.31
CCDC88A-210ENST00000468534 BICRALQ6AI39 1079 aa6.88□□□□□ -1.31
CCDC88A-210ENST00000468534 TICAM2Q86XR7 235 aa6.88□□□□□ -1.31
CCDC88A-210ENST00000468534 TAB3Q8N5C8 712 aaPredicted RBP6.88□□□□□ -1.31
CCDC88A-210ENST00000468534 KRTAP4-11Q9BYQ6 195 aa6.88□□□□□ -1.31
CCDC88A-210ENST00000468534 XYLT2Q9H1B5 865 aa6.88□□□□□ -1.31
CCDC88A-210ENST00000468534 HCFC2Q9Y5Z7 792 aa6.88□□□□□ -1.31
CCDC88A-210ENST00000468534 FGF10O15520 208 aaPredicted RBP6.87□□□□□ -1.31
CCDC88A-210ENST00000468534 CBX2Q14781 532 aaPredicted RBP6.87□□□□□ -1.31
CCDC88A-210ENST00000468534 CYP2R1Q6VVX0 501 aa6.87□□□□□ -1.31
CCDC88A-210ENST00000468534 LSRQ86X29 649 aaPredicted RBP6.87□□□□□ -1.31
CCDC88A-210ENST00000468534 ADCY4Q8NFM4 1077 aa6.87□□□□□ -1.31
CCDC88A-210ENST00000468534 SF3B6Q9Y3B4 125 aaKnown RBP6.87□□□□□ -1.31
CCDC88A-210ENST00000468534 FHOD1Q9Y613 1164 aa6.87□□□□□ -1.31
CCDC88A-210ENST00000468534 ITGA4P13612 1032 aa6.86□□□□□ -1.31
CCDC88A-210ENST00000468534 SYN1P17600 705 aa6.86□□□□□ -1.31
CCDC88A-210ENST00000468534 NOP2P46087 812 aaKnown RBP6.86□□□□□ -1.31
CCDC88A-210ENST00000468534 MAPKAPK2P49137 400 aa6.86□□□□□ -1.31
CCDC88A-210ENST00000468534 RACK1P63244 317 aaKnown RBP6.86□□□□□ -1.31
CCDC88A-210ENST00000468534 RNF34Q969K3 372 aa6.86□□□□□ -1.31
CCDC88A-210ENST00000468534 FCRL3Q96P31 734 aaPredicted RBP6.86□□□□□ -1.31
CCDC88A-210ENST00000468534 DBHP09172 617 aa6.85□□□□□ -1.31
CCDC88A-210ENST00000468534 NR1I3Q14994 352 aa6.85□□□□□ -1.31
CCDC88A-210ENST00000468534 TCEAL1Q15170 157 aa6.85□□□□□ -1.31
CCDC88A-210ENST00000468534 ANKRD39Q53RE8 183 aa6.85□□□□□ -1.31
CCDC88A-210ENST00000468534 LCE5AQ5TCM9 118 aa6.85□□□□□ -1.31
CCDC88A-210ENST00000468534 CERS3Q8IU89 383 aa6.85□□□□□ -1.31
CCDC88A-210ENST00000468534 SP8Q8IXZ3 490 aa6.85□□□□□ -1.31
CCDC88A-210ENST00000468534 PTCHD1Q96NR3 888 aa6.85□□□□□ -1.31
CCDC88A-210ENST00000468534 METTL5Q9NRN9 209 aaKnown RBP6.85□□□□□ -1.31
CCDC88A-210ENST00000468534 RTEL1Q9NZ71 1219 aa6.85□□□□□ -1.31
CCDC88A-210ENST00000468534 DBR1Q9UK59 544 aaKnown RBP6.85□□□□□ -1.31
CCDC88A-210ENST00000468534 PLA2G2DQ9UNK4 145 aa6.85□□□□□ -1.31
CCDC88A-210ENST00000468534 LTBP3Q9NS15 1303 aa6.84□□□□□ -1.31
CCDC88A-210ENST00000468534 PPM1GO15355 546 aaPredicted RBP6.84□□□□□ -1.31
CCDC88A-210ENST00000468534 PFKLP17858 780 aa6.84□□□□□ -1.31
CCDC88A-210ENST00000468534 POU4F1Q01851 419 aa6.84□□□□□ -1.31
CCDC88A-210ENST00000468534 PAQR3Q6TCH7 311 aa6.84□□□□□ -1.31
CCDC88A-210ENST00000468534 RBBP8NLQ8NC74 664 aaPredicted RBP6.84□□□□□ -1.31
CCDC88A-210ENST00000468534 CRBNQ96SW2 442 aa6.84□□□□□ -1.31
CCDC88A-210ENST00000468534 PSMD1Q99460 953 aa6.84□□□□□ -1.31
CCDC88A-210ENST00000468534 SRRTQ9BXP5 876 aaKnown RBP6.84□□□□□ -1.31
CCDC88A-210ENST00000468534 ADAM7Q9H2U9 754 aa6.84□□□□□ -1.31
CCDC88A-210ENST00000468534 RXFP1Q9HBX9 757 aa6.84□□□□□ -1.31
CCDC88A-210ENST00000468534 PDLIM7Q9NR12 457 aa6.84□□□□□ -1.31
CCDC88A-210ENST00000468534 ZNF214Q9UL59 606 aaPredicted RBP6.84□□□□□ -1.31
CCDC88A-210ENST00000468534 F8W031 263 aaPredicted RBP6.83□□□□□ -1.32
CCDC88A-210ENST00000468534 CBFA2T2O43439 604 aa6.83□□□□□ -1.32
CCDC88A-210ENST00000468534 CLSTN1O94985 981 aa6.83□□□□□ -1.32
CCDC88A-210ENST00000468534 TBC1D8O95759 1140 aa6.83□□□□□ -1.32
CCDC88A-210ENST00000468534 CYBBP04839 570 aa6.83□□□□□ -1.32
CCDC88A-210ENST00000468534 PAK2Q13177 524 aa6.83□□□□□ -1.32
CCDC88A-210ENST00000468534 GNPTABQ3T906 1256 aa6.83□□□□□ -1.32
CCDC88A-210ENST00000468534 LINC01356Q8N9X3 169 aa6.83□□□□□ -1.32
CCDC88A-210ENST00000468534 KRTAP9-3Q9BYQ3 159 aa6.83□□□□□ -1.32
CCDC88A-210ENST00000468534 GINM1Q9NU53 330 aa6.83□□□□□ -1.32
CCDC88A-210ENST00000468534 DDX41Q9UJV9 622 aaKnown RBP6.83□□□□□ -1.32
CCDC88A-210ENST00000468534 PCDHB10Q9UN67 800 aa6.83□□□□□ -1.32
CCDC88A-210ENST00000468534 ZC3H12DA2A288 527 aaKnown RBP6.82□□□□□ -1.32
CCDC88A-210ENST00000468534 STXBP3O00186 592 aa6.82□□□□□ -1.32
CCDC88A-210ENST00000468534 L1CAMP32004 1257 aa6.82□□□□□ -1.32
CCDC88A-210ENST00000468534 DPY19L1Q2PZI1 675 aa6.82□□□□□ -1.32
CCDC88A-210ENST00000468534 ADAT2Q7Z6V5 191 aaKnown RBP6.82□□□□□ -1.32
CCDC88A-210ENST00000468534 ADGRG2Q8IZP9 1017 aa6.82□□□□□ -1.32
CCDC88A-210ENST00000468534 HAUS7Q99871 368 aa6.82□□□□□ -1.32
CCDC88A-210ENST00000468534 EFR3BQ9Y2G0 817 aa6.82□□□□□ -1.32
CCDC88A-210ENST00000468534 IRS2Q9Y4H2 1338 aa6.81□□□□□ -1.32
CCDC88A-210ENST00000468534 FFAR3O14843 346 aa6.81□□□□□ -1.32
CCDC88A-210ENST00000468534 SRGAP3O43295 1099 aa6.81□□□□□ -1.32
CCDC88A-210ENST00000468534 VAMP4O75379 141 aa6.81□□□□□ -1.32
CCDC88A-210ENST00000468534 IGFBP6P24592 240 aaPredicted RBP6.81□□□□□ -1.32
CCDC88A-210ENST00000468534 MC3RP41968 323 aa6.81□□□□□ -1.32
CCDC88A-210ENST00000468534 PRR5P85299 388 aa6.81□□□□□ -1.32
CCDC88A-210ENST00000468534 TARBP2Q15633 366 aaKnown RBP6.81□□□□□ -1.32
CCDC88A-210ENST00000468534 HEATR6Q6AI08 1181 aaKnown RBP6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms