RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 C2CD4DB7Z1M9 353 aa3.34□□□□□ -1.87
USP40-211ENST00000464956 C5orf67F2Z3F1 127 aa3.34□□□□□ -1.87
USP40-211ENST00000464956 TM4SF5O14894 197 aa3.34□□□□□ -1.87
USP40-211ENST00000464956 GRM6O15303 877 aa3.34□□□□□ -1.87
USP40-211ENST00000464956 LILRB5O75023 590 aa3.34□□□□□ -1.87
USP40-211ENST00000464956 WISP1O95388 367 aa3.34□□□□□ -1.87
USP40-211ENST00000464956 MMP1P03956 469 aa3.34□□□□□ -1.87
USP40-211ENST00000464956 DCNP07585 359 aaKnown RBP3.34□□□□□ -1.87
USP40-211ENST00000464956 ASNSP08243 561 aa3.34□□□□□ -1.87
USP40-211ENST00000464956 ARP10275 920 aa3.34□□□□□ -1.87
USP40-211ENST00000464956 ZEB1P37275 1124 aaPredicted RBP3.34□□□□□ -1.87
USP40-211ENST00000464956 GYG1P46976 350 aa3.34□□□□□ -1.87
USP40-211ENST00000464956 NRIP1P48552 1158 aa3.34□□□□□ -1.87
USP40-211ENST00000464956 RGS3P49796 1198 aa3.34□□□□□ -1.87
USP40-211ENST00000464956 PLCD1P51178 756 aa3.34□□□□□ -1.87
USP40-211ENST00000464956 HTRA4P83105 476 aaPredicted RBP3.34□□□□□ -1.87
USP40-211ENST00000464956 CSTF1Q05048 431 aaKnown RBP3.34□□□□□ -1.87
USP40-211ENST00000464956 GOLGA2Q08379 1002 aa3.34□□□□□ -1.87
USP40-211ENST00000464956 NEUROD1Q13562 356 aa3.34□□□□□ -1.87
USP40-211ENST00000464956 NOL8Q76FK4 1167 aaKnown RBP3.34□□□□□ -1.87
USP40-211ENST00000464956 NCAPG2Q86XI2 1143 aa3.34□□□□□ -1.87
USP40-211ENST00000464956 ZDHHC14Q8IZN3 488 aa3.34□□□□□ -1.87
USP40-211ENST00000464956 MYOCDQ8IZQ8 938 aa3.34□□□□□ -1.87
USP40-211ENST00000464956 CCDC155Q8N6L0 562 aa3.34□□□□□ -1.87
USP40-211ENST00000464956 TDRD5Q8NAT2 981 aaKnown RBP3.34□□□□□ -1.87
USP40-211ENST00000464956 ZBTB44Q8NCP5 570 aa3.34□□□□□ -1.87
USP40-211ENST00000464956 PPIL4Q8WUA2 492 aaKnown RBP eCLIP3.34□□□□□ -1.87
USP40-211ENST00000464956 NANOS1Q8WY41 292 aaKnown RBP3.34□□□□□ -1.87
USP40-211ENST00000464956 CDCA7LQ96GN5 454 aa3.34□□□□□ -1.87
USP40-211ENST00000464956 NECTIN4Q96NY8 510 aa3.34□□□□□ -1.87
USP40-211ENST00000464956 MYD88Q99836 296 aa3.34□□□□□ -1.87
USP40-211ENST00000464956 IDI2Q9BXS1 227 aa3.34□□□□□ -1.87
USP40-211ENST00000464956 SPATC1LQ9H0A9 340 aa3.34□□□□□ -1.87
USP40-211ENST00000464956 BCAS3Q9H6U6 928 aa3.34□□□□□ -1.87
USP40-211ENST00000464956 TBC1D17Q9HA65 648 aa3.34□□□□□ -1.87
USP40-211ENST00000464956 TRMT13Q9NUP7 481 aaKnown RBP3.34□□□□□ -1.87
USP40-211ENST00000464956 SPATA6Q9NWH7 488 aaPredicted RBP3.34□□□□□ -1.87
USP40-211ENST00000464956 LIMD1Q9UGP4 676 aa3.34□□□□□ -1.87
USP40-211ENST00000464956 NOD1Q9Y239 953 aa3.34□□□□□ -1.87
USP40-211ENST00000464956 MSRB2Q9Y3D2 182 aa3.34□□□□□ -1.87
USP40-211ENST00000464956 FRMPD3Q5JV73 1810 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 ECM29Q5VYK3 1845 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 USP9XQ93008 2570 aaPredicted RBP3.33□□□□□ -1.88
USP40-211ENST00000464956 ANKRD18BA2A2Z9 1011 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 WDR46O15213 610 aaKnown RBP3.33□□□□□ -1.88
USP40-211ENST00000464956 PLIN1O60240 522 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 GLP2RO95838 553 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 GP1BBP13224 206 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 BMPR1AP36894 532 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 PSMC6P62333 389 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 IRX5P78411 483 aaPredicted RBP3.33□□□□□ -1.88
USP40-211ENST00000464956 BEX3Q00994 111 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 MAPK8IP2Q13387 824 aaPredicted RBP3.33□□□□□ -1.88
USP40-211ENST00000464956 TDGQ13569 410 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 PLS1Q14651 629 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 LPAL2Q16609 132 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 FSCN1Q16658 493 aaKnown RBP3.33□□□□□ -1.88
USP40-211ENST00000464956 C4orf17Q53FE4 359 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 CAVIN4Q5BKX8 364 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 FAM47CQ5HY64 1035 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 COLEC12Q5KU26 742 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 PHLDB3Q6NSJ2 640 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 RUFY4Q6ZNE9 571 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 CATSPERGQ6ZRH7 1159 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 SH3BP5LQ7L8J4 393 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 RBM23Q86U06 439 aaKnown RBP3.33□□□□□ -1.88
USP40-211ENST00000464956 SLF2Q8IX21 1173 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 MAML2Q8IZL2 1156 aaPredicted RBP3.33□□□□□ -1.88
USP40-211ENST00000464956 FIBCD1Q8N539 461 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 CELF5Q8N6W0 485 aaKnown RBP3.33□□□□□ -1.88
USP40-211ENST00000464956 MB21D1Q8N884 522 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 MMP19Q99542 508 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 FEZ1Q99689 392 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 FAM126AQ9BYI3 521 aaPredicted RBP3.33□□□□□ -1.88
USP40-211ENST00000464956 BCO2Q9BYV7 579 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 AP5M1Q9H0R1 490 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 TLE6Q9H808 572 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 GPR108Q9NPR9 543 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 EMILIN3Q9NT22 766 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 CHPF2Q9P2E5 772 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 WNT16Q9UBV4 365 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 TSPYL4Q9UJ04 414 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 DUSP12Q9UNI6 340 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 IQSEC3Q9UPP2 1182 aaPredicted RBP3.33□□□□□ -1.88
USP40-211ENST00000464956 MROH7-TTC4A0A0A0MT08 1334 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 GRIN2DO15399 1336 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 MROH5Q6ZUA9 1318 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 SPTBN2O15020 2390 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 CEP250Q9BV73 2442 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 ZFYVE26Q68DK2 2539 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 SIPA1L3O60292 1781 aaPredicted RBP3.33□□□□□ -1.88
USP40-211ENST00000464956 PHIPQ8WWQ0 1821 aa3.33□□□□□ -1.88
USP40-211ENST00000464956 SPEGQ15772 3267 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 MYO15AQ9UKN7 3530 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 A0A1B0GTL3 188 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 POTEMA6NI47 508 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 FAM196BA6NMK8 535 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 SPDYE16A6NNV3 312 aaPredicted RBP3.32□□□□□ -1.88
USP40-211ENST00000464956 LILRB3O75022 631 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 MAFO75444 373 aaPredicted RBP3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms