RNA–Protein interactions for RNA: ENST00000462658.1

UBE4B-204, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-204ENST00000462658 GIMAP7Q8NHV1 300 aa9.54□□□□□ -0.88
UBE4B-204ENST00000462658 RUNDC1Q96C34 613 aa9.54□□□□□ -0.88
UBE4B-204ENST00000462658 ZNRF3Q9ULT6 936 aa9.54□□□□□ -0.88
UBE4B-204ENST00000462658 PIK3C2AO00443 1686 aa9.54□□□□□ -0.88
UBE4B-204ENST00000462658 CDK12Q9NYV4 1490 aaPredicted RBP9.53□□□□□ -0.88
UBE4B-204ENST00000462658 PRR19A6NJB7 356 aa9.53□□□□□ -0.88
UBE4B-204ENST00000462658 APAF1O14727 1248 aa9.53□□□□□ -0.88
UBE4B-204ENST00000462658 TGFB1P01137 390 aa9.53□□□□□ -0.88
UBE4B-204ENST00000462658 ATF4P18848 351 aaPredicted RBP9.53□□□□□ -0.88
UBE4B-204ENST00000462658 AMPHP49418 695 aa9.53□□□□□ -0.88
UBE4B-204ENST00000462658 YARSP54577 528 aaKnown RBP9.53□□□□□ -0.88
UBE4B-204ENST00000462658 ZC3H6P61129 1189 aaKnown RBP9.53□□□□□ -0.88
UBE4B-204ENST00000462658 NAALADL2Q58DX5 795 aa9.53□□□□□ -0.88
UBE4B-204ENST00000462658 KCNH5Q8NCM2 988 aa9.53□□□□□ -0.88
UBE4B-204ENST00000462658 SPATA32Q96LK8 384 aa9.53□□□□□ -0.88
UBE4B-204ENST00000462658 PNNQ9H307 717 aaKnown RBP9.53□□□□□ -0.88
UBE4B-204ENST00000462658 GMIPQ9P107 970 aa9.53□□□□□ -0.88
UBE4B-204ENST00000462658 MAP2P11137 1827 aaKnown RBP9.53□□□□□ -0.88
UBE4B-204ENST00000462658 CRYBG1Q9Y4K1 1723 aa9.53□□□□□ -0.88
UBE4B-204ENST00000462658 SBNO1A3KN83 1393 aa9.52□□□□□ -0.88
UBE4B-204ENST00000462658 EOMESO95936 686 aa9.52□□□□□ -0.89
UBE4B-204ENST00000462658 GCP02774 474 aa9.52□□□□□ -0.89
UBE4B-204ENST00000462658 GNL2Q13823 731 aaKnown RBP9.52□□□□□ -0.89
UBE4B-204ENST00000462658 COL9A2Q14055 689 aaPredicted RBP9.52□□□□□ -0.89
UBE4B-204ENST00000462658 HSP90AB2PQ58FF8 381 aa9.52□□□□□ -0.89
UBE4B-204ENST00000462658 DUSP27Q5VZP5 1158 aa9.52□□□□□ -0.89
UBE4B-204ENST00000462658 LETMD1Q6P1Q0 360 aa9.52□□□□□ -0.89
UBE4B-204ENST00000462658 CDH24Q86UP0 819 aa9.52□□□□□ -0.89
UBE4B-204ENST00000462658 NGEFQ8N5V2 710 aa9.52□□□□□ -0.89
UBE4B-204ENST00000462658 ATG4CQ96DT6 458 aa9.52□□□□□ -0.89
UBE4B-204ENST00000462658 KIF2CQ99661 725 aa9.52□□□□□ -0.89
UBE4B-204ENST00000462658 LRRC4CQ9HCJ2 640 aa9.52□□□□□ -0.89
UBE4B-204ENST00000462658 CNTNAP4Q9C0A0 1308 aa9.52□□□□□ -0.89
UBE4B-204ENST00000462658 ALS2Q96Q42 1657 aa9.51□□□□□ -0.89
UBE4B-204ENST00000462658 MARF1Q9Y4F3 1742 aaKnown RBP9.51□□□□□ -0.89
UBE4B-204ENST00000462658 DNAJA1P31689 397 aaKnown RBP9.51□□□□□ -0.89
UBE4B-204ENST00000462658 EIF4A2Q14240 407 aaKnown RBP9.51□□□□□ -0.89
UBE4B-204ENST00000462658 CYP27C1Q4G0S4 372 aa9.51□□□□□ -0.89
UBE4B-204ENST00000462658 SLC51AQ86UW1 340 aa9.51□□□□□ -0.89
UBE4B-204ENST00000462658 SLFN12Q8IYM2 578 aa9.51□□□□□ -0.89
UBE4B-204ENST00000462658 PHACTR4Q8IZ21 702 aa9.51□□□□□ -0.89
UBE4B-204ENST00000462658 TCP11L2Q8N4U5 519 aa9.51□□□□□ -0.89
UBE4B-204ENST00000462658 BAHD1Q8TBE0 780 aaPredicted RBP9.51□□□□□ -0.89
UBE4B-204ENST00000462658 TMEM40Q8WWA1 233 aa9.51□□□□□ -0.89
UBE4B-204ENST00000462658 SEC16BQ96JE7 1060 aa9.51□□□□□ -0.89
UBE4B-204ENST00000462658 PLEKHF1Q96S99 279 aa9.51□□□□□ -0.89
UBE4B-204ENST00000462658 U3KQE9 123 aa9.51□□□□□ -0.89
UBE4B-204ENST00000462658 USP54Q70EL1 1684 aa9.51□□□□□ -0.89
UBE4B-204ENST00000462658 SPATA31A3Q5VYP0 1347 aa9.51□□□□□ -0.89
UBE4B-204ENST00000462658 FLT4P35916 1363 aa9.5□□□□□ -0.89
UBE4B-204ENST00000462658 KIF24Q5T7B8 1368 aa9.5□□□□□ -0.89
UBE4B-204ENST00000462658 POLR2BP30876 1174 aaKnown RBP9.5□□□□□ -0.89
UBE4B-204ENST00000462658 HOXC9P31274 260 aa9.5□□□□□ -0.89
UBE4B-204ENST00000462658 CYP27A1Q02318 531 aa9.5□□□□□ -0.89
UBE4B-204ENST00000462658 RUFY4Q6ZNE9 571 aa9.5□□□□□ -0.89
UBE4B-204ENST00000462658 FAM214BQ7L5A3 538 aa9.5□□□□□ -0.89
UBE4B-204ENST00000462658 VPS37DQ86XT2 251 aa9.5□□□□□ -0.89
UBE4B-204ENST00000462658 PPP1R13LQ8WUF5 828 aa9.5□□□□□ -0.89
UBE4B-204ENST00000462658 HEXIM2Q96MH2 286 aaKnown RBP9.5□□□□□ -0.89
UBE4B-204ENST00000462658 SRRTQ9BXP5 876 aaKnown RBP9.5□□□□□ -0.89
UBE4B-204ENST00000462658 LEMD3Q9Y2U8 911 aa9.5□□□□□ -0.89
UBE4B-204ENST00000462658 USP19O94966 1318 aa9.5□□□□□ -0.89
UBE4B-204ENST00000462658 MEIS3P2A8K0S8 358 aa9.49□□□□□ -0.89
UBE4B-204ENST00000462658 HMOX1P09601 288 aa9.49□□□□□ -0.89
UBE4B-204ENST00000462658 RAG1P15918 1043 aa9.49□□□□□ -0.89
UBE4B-204ENST00000462658 HOXA10P31260 410 aaPredicted RBP9.49□□□□□ -0.89
UBE4B-204ENST00000462658 FAM181AQ8N9Y4 354 aa9.49□□□□□ -0.89
UBE4B-204ENST00000462658 CYB5D2Q8WUJ1 264 aa9.49□□□□□ -0.89
UBE4B-204ENST00000462658 CPLX3Q8WVH0 158 aa9.49□□□□□ -0.89
UBE4B-204ENST00000462658 IP6K1Q92551 441 aa9.49□□□□□ -0.89
UBE4B-204ENST00000462658 METTL22Q9BUU2 404 aaPredicted RBP9.49□□□□□ -0.89
UBE4B-204ENST00000462658 CNNM2Q9H8M5 875 aa9.49□□□□□ -0.89
UBE4B-204ENST00000462658 PIM2Q9P1W9 311 aa9.49□□□□□ -0.89
UBE4B-204ENST00000462658 TPX2Q9ULW0 747 aaKnown RBP9.49□□□□□ -0.89
UBE4B-204ENST00000462658 SPATA31A6Q5VVP1 1343 aa9.49□□□□□ -0.89
UBE4B-204ENST00000462658 MAPK8IP3Q9UPT6 1336 aa9.49□□□□□ -0.89
UBE4B-204ENST00000462658 TNS3Q68CZ2 1445 aa9.48□□□□□ -0.89
UBE4B-204ENST00000462658 FAM86C2PA6NEL3 165 aa9.48□□□□□ -0.89
UBE4B-204ENST00000462658 IMPDH2P12268 514 aa9.48□□□□□ -0.89
UBE4B-204ENST00000462658 NME1P15531 152 aaKnown RBP9.48□□□□□ -0.89
UBE4B-204ENST00000462658 PRKAR2BP31323 418 aa9.48□□□□□ -0.89
UBE4B-204ENST00000462658 EIF6P56537 245 aaKnown RBP9.48□□□□□ -0.89
UBE4B-204ENST00000462658 ARID5AQ03989 594 aa9.48□□□□□ -0.89
UBE4B-204ENST00000462658 LRRFIP1Q32MZ4 808 aaKnown RBP9.48□□□□□ -0.89
UBE4B-204ENST00000462658 CDCP2Q5VXM1 449 aa9.48□□□□□ -0.89
UBE4B-204ENST00000462658 NLRC3Q7RTR2 1065 aa9.48□□□□□ -0.89
UBE4B-204ENST00000462658 ARHGEF25Q86VW2 580 aa9.48□□□□□ -0.89
UBE4B-204ENST00000462658 LSRQ86X29 649 aaPredicted RBP9.48□□□□□ -0.89
UBE4B-204ENST00000462658 SLC43A3Q8NBI5 491 aa9.48□□□□□ -0.89
UBE4B-204ENST00000462658 DNAJB8Q8NHS0 232 aa9.48□□□□□ -0.89
UBE4B-204ENST00000462658 CCDC74BQ96LY2 380 aa9.48□□□□□ -0.89
UBE4B-204ENST00000462658 RRP7AQ9Y3A4 280 aaKnown RBP9.48□□□□□ -0.89
UBE4B-204ENST00000462658 ZNF521Q96K83 1311 aa9.48□□□□□ -0.89
UBE4B-204ENST00000462658 RTL1A6NKG5 1358 aa9.48□□□□□ -0.89
UBE4B-204ENST00000462658 ARHGEF10O15013 1369 aa9.48□□□□□ -0.89
UBE4B-204ENST00000462658 PEAK1Q9H792 1746 aa9.48□□□□□ -0.89
UBE4B-204ENST00000462658 SLIT3O75094 1523 aa9.47□□□□□ -0.89
UBE4B-204ENST00000462658 NFAT5O94916 1531 aa9.47□□□□□ -0.89
UBE4B-204ENST00000462658 CYP26A1O43174 497 aa9.47□□□□□ -0.89
UBE4B-204ENST00000462658 TMPOP42166 694 aaKnown RBP9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms