RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 GAP43P17677 238 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 HNRNPH2P55795 449 aaKnown RBP7.75□□□□□ -1.17
SYNE1-216ENST00000461872 KRT31Q15323 416 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 DISC1Q9NRI5 854 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 XRCC5P13010 732 aaKnown RBP7.75□□□□□ -1.17
SYNE1-216ENST00000461872 CLEC4GQ6UXB4 293 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 EXOC7Q9UPT5 735 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 MACROD2A1Z1Q3 448 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 KLHL30Q0D2K2 578 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 SH2D4BQ5SQS7 431 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 GPATCH4Q5T3I0 446 aaKnown RBP7.75□□□□□ -1.17
SYNE1-216ENST00000461872 NCAPGQ9BPX3 1015 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 FOXP3Q9BZS1 431 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 GOLPH3LQ9H4A5 285 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 SH2D4AQ9H788 454 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 ADD3Q9UEY8 706 aaKnown RBP7.75□□□□□ -1.17
SYNE1-216ENST00000461872 TNS3Q68CZ2 1445 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 ANKRD62A6NC57 917 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 FERP16591 822 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 SLC39A6Q13433 755 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 SNCBQ16143 134 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 STRBPQ96SI9 672 aaKnown RBP7.75□□□□□ -1.17
SYNE1-216ENST00000461872 AMFRQ9UKV5 643 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 GGPS1O95749 300 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 PPP4R3AQ6IN85 833 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 TPTE2Q6XPS3 522 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 GUF1Q8N442 669 aaKnown RBP7.75□□□□□ -1.17
SYNE1-216ENST00000461872 IKBKGQ9Y6K9 419 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 TRAF5O00463 557 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 LDHBP07195 334 aaKnown RBP7.75□□□□□ -1.17
SYNE1-216ENST00000461872 GNGT1P63211 74 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 RBL2Q08999 1139 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 PTGDRQ13258 359 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 PEX26Q7Z412 305 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 YTHDF3Q7Z739 585 aaKnown RBP7.75□□□□□ -1.17
SYNE1-216ENST00000461872 PPFIBP2Q8ND30 876 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 TAB2Q9NYJ8 693 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 FHOD1Q9Y613 1164 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 CES2O00748 559 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 ZNF189O75820 626 aaPredicted RBP7.75□□□□□ -1.17
SYNE1-216ENST00000461872 RAPGEF1Q13905 1077 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 ASPRV1Q53RT3 343 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 FYB2Q5VWT5 728 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 PAGE5Q96GU1 130 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 VCX3BQ9H321 246 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 STX8Q9UNK0 236 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 PFASO15067 1338 aa7.75□□□□□ -1.17
SYNE1-216ENST00000461872 KDM6AO15550 1401 aaPredicted RBP7.75□□□□□ -1.17
SYNE1-216ENST00000461872 SPDYE3A6NKU9 549 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 SCP2P22307 547 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 CTNNA1P35221 906 aaKnown RBP7.74□□□□□ -1.17
SYNE1-216ENST00000461872 STX17P56962 302 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 CCDC174Q6PII3 467 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 HEATR3Q7Z4Q2 680 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 VPS16Q9H269 839 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 BCAP29Q9UHQ4 241 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 ADD1P35611 737 aaKnown RBP7.74□□□□□ -1.17
SYNE1-216ENST00000461872 CNKSR2Q8WXI2 1034 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 PHKBQ93100 1093 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 USP54Q70EL1 1684 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 TNFRSF8P28908 595 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 CALCRLQ16602 461 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 LRRC59Q96AG4 307 aaKnown RBP7.74□□□□□ -1.17
SYNE1-216ENST00000461872 CEP72Q9P209 647 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 LARSQ9P2J5 1176 aaKnown RBP7.74□□□□□ -1.17
SYNE1-216ENST00000461872 ZEB2O60315 1214 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 PHACTR2O75167 634 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 SERPING1P05155 500 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 ZNF18P17022 549 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 SSR1P43307 286 aaKnown RBP7.74□□□□□ -1.17
SYNE1-216ENST00000461872 ISM2Q6H9L7 571 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 C2CD5Q86YS7 1000 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 VEZTQ9HBM0 779 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 NID2Q14112 1375 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 PIK3AP1Q6ZUJ8 805 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 TMTC3Q6ZXV5 915 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 CCDC110Q8TBZ0 833 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 INTUQ9ULD6 942 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 PODXLO00592 558 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 OSBP2Q969R2 916 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 ADCY2Q08462 1091 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 MAP3K21Q5TCX8 1036 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 CAPZA3Q96KX2 299 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 DNAJC7Q99615 494 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 MCM9Q9NXL9 1143 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 ARMCX3Q9UH62 379 aaPredicted RBP7.74□□□□□ -1.17
SYNE1-216ENST00000461872 FAN1Q9Y2M0 1017 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 PASKQ96RG2 1323 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 NR1D1P20393 614 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 PPP1R21Q6ZMI0 780 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 ISCA1Q9BUE6 129 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 CPSF2Q9P2I0 782 aaKnown RBP7.74□□□□□ -1.17
SYNE1-216ENST00000461872 UBN2Q6ZU65 1347 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 SYNGAP1Q96PV0 1343 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 NCKAP5LQ9HCH0 1330 aa7.74□□□□□ -1.17
SYNE1-216ENST00000461872 CORO7P57737 925 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 METTL16Q86W50 562 aaKnown RBP7.73□□□□□ -1.17
SYNE1-216ENST00000461872 CCDC197Q8NCU1 140 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 DESI2Q9BSY9 194 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 ABCB6Q9NP58 842 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms