RNA–Protein interactions for RNA: ENST00000460158.1

VPS8-215, Transcript of VPS8, CORVET complex subunit, human

TSL 3

Gene VPS8, Length 366 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS8-215	ENST00000460158	LMCD1	Q9NZU5	365 aa		5	□□□□□ -1.61
VPS8-215	ENST00000460158	CTNND2	Q9UQB3	1225 aa		5	□□□□□ -1.61
VPS8-215	ENST00000460158	STXBP3	O00186	592 aa		4.99	□□□□□ -1.61
VPS8-215	ENST00000460158	TSPAN15	O95858	294 aa		4.99	□□□□□ -1.61
VPS8-215	ENST00000460158	GSTM1	P09488	218 aa		4.99	□□□□□ -1.61
VPS8-215	ENST00000460158	FAM153B	P0C7A2	387 aa		4.99	□□□□□ -1.61
VPS8-215	ENST00000460158	NOP2	P46087	812 aa	Known RBP	4.99	□□□□□ -1.61
VPS8-215	ENST00000460158	RAP1GAP	P47736	663 aa		4.99	□□□□□ -1.61
VPS8-215	ENST00000460158	HSP90AA2P	Q14568	343 aa	Predicted RBP	4.99	□□□□□ -1.61
VPS8-215	ENST00000460158	MLANA	Q16655	118 aa		4.99	□□□□□ -1.61
VPS8-215	ENST00000460158	JAZF1	Q86VZ6	243 aa		4.99	□□□□□ -1.61
VPS8-215	ENST00000460158	KANSL2	Q9H9L4	492 aa		4.99	□□□□□ -1.61
VPS8-215	ENST00000460158	AP5S1	Q9NUS5	200 aa		4.99	□□□□□ -1.61
VPS8-215	ENST00000460158	ZNF281	Q9Y2X9	895 aa		4.99	□□□□□ -1.61
VPS8-215	ENST00000460158	DNAJC25-GNG10	A0A024R161	153 aa		4.98	□□□□□ -1.61
VPS8-215	ENST00000460158	AURKA	O14965	403 aa		4.98	□□□□□ -1.61
VPS8-215	ENST00000460158	HMGB1	P09429	215 aa	Known RBP	4.98	□□□□□ -1.61
VPS8-215	ENST00000460158	RPL10	P27635	214 aa	Known RBP	4.98	□□□□□ -1.61
VPS8-215	ENST00000460158	CYP4F3	Q08477	520 aa		4.98	□□□□□ -1.61
VPS8-215	ENST00000460158	RALGPS1	Q5JS13	557 aa		4.98	□□□□□ -1.61
VPS8-215	ENST00000460158	YOD1	Q5VVQ6	348 aa	Predicted RBP	4.98	□□□□□ -1.61
VPS8-215	ENST00000460158	FOXB2	Q5VYV0	432 aa		4.98	□□□□□ -1.61
VPS8-215	ENST00000460158	WAPL	Q7Z5K2	1190 aa		4.98	□□□□□ -1.61
VPS8-215	ENST00000460158	JMY	Q8N9B5	988 aa		4.98	□□□□□ -1.61
VPS8-215	ENST00000460158	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	4.98	□□□□□ -1.61
VPS8-215	ENST00000460158	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	4.98	□□□□□ -1.61
VPS8-215	ENST00000460158	SH3TC2	Q8TF17	1288 aa		4.98	□□□□□ -1.61
VPS8-215	ENST00000460158	RNPC3	Q96LT9	517 aa	Known RBP	4.98	□□□□□ -1.61
VPS8-215	ENST00000460158	AARSD1	Q9BTE6	412 aa	Known RBP	4.98	□□□□□ -1.61
VPS8-215	ENST00000460158	CDADC1	Q9BWV3	514 aa		4.98	□□□□□ -1.61
VPS8-215	ENST00000460158	NKX2-4	Q9H2Z4	354 aa		4.98	□□□□□ -1.61
VPS8-215	ENST00000460158	ADAMTS10	Q9H324	1103 aa		4.98	□□□□□ -1.61
VPS8-215	ENST00000460158	CWC22	Q9HCG8	908 aa	Known RBP	4.98	□□□□□ -1.61
VPS8-215	ENST00000460158	CYP26B1	Q9NR63	512 aa		4.98	□□□□□ -1.61
VPS8-215	ENST00000460158	SLAMF8	Q9P0V8	285 aa		4.98	□□□□□ -1.61
VPS8-215	ENST00000460158	EBF1	Q9UH73	591 aa		4.98	□□□□□ -1.61
VPS8-215	ENST00000460158	MRPL42	Q9Y6G3	142 aa	Known RBP	4.98	□□□□□ -1.61
VPS8-215	ENST00000460158	TRAV20	A0A0B4J274	112 aa		4.97	□□□□□ -1.61
VPS8-215	ENST00000460158	LOC105371045	A0A1W2PR82	267 aa		4.97	□□□□□ -1.61
VPS8-215	ENST00000460158	C2orf71	A6NGG8	1288 aa		4.97	□□□□□ -1.61
VPS8-215	ENST00000460158	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	4.97	□□□□□ -1.61
VPS8-215	ENST00000460158	PRODH	O43272	600 aa		4.97	□□□□□ -1.61
VPS8-215	ENST00000460158	GLI1	P08151	1106 aa		4.97	□□□□□ -1.61
VPS8-215	ENST00000460158	SNRPB2	P08579	225 aa	Known RBP	4.97	□□□□□ -1.61
VPS8-215	ENST00000460158	HOXC12	P31275	282 aa		4.97	□□□□□ -1.61
VPS8-215	ENST00000460158	ECI1	P42126	302 aa		4.97	□□□□□ -1.61
VPS8-215	ENST00000460158	SCRN1	Q12765	414 aa		4.97	□□□□□ -1.61
VPS8-215	ENST00000460158	C2orf27A	Q580R0	203 aa		4.97	□□□□□ -1.61
VPS8-215	ENST00000460158	SIAH1	Q8IUQ4	282 aa		4.97	□□□□□ -1.61
VPS8-215	ENST00000460158	THAP3	Q8WTV1	239 aa	Predicted RBP	4.97	□□□□□ -1.61
VPS8-215	ENST00000460158	ALPK1	Q96QP1	1244 aa		4.97	□□□□□ -1.61
VPS8-215	ENST00000460158	IER2	Q9BTL4	223 aa		4.97	□□□□□ -1.61
VPS8-215	ENST00000460158	BACE2	Q9Y5Z0	518 aa		4.97	□□□□□ -1.61
VPS8-215	ENST00000460158	TLDC2	A0PJX2	215 aa		4.96	□□□□□ -1.62
VPS8-215	ENST00000460158	FGF10	O15520	208 aa	Predicted RBP	4.96	□□□□□ -1.62
VPS8-215	ENST00000460158	DLX3	O60479	287 aa		4.96	□□□□□ -1.62
VPS8-215	ENST00000460158	THBD	P07204	575 aa		4.96	□□□□□ -1.62
VPS8-215	ENST00000460158	FGFR1	P11362	822 aa		4.96	□□□□□ -1.62
VPS8-215	ENST00000460158	PABPC1	P11940	636 aa	Known RBP	4.96	□□□□□ -1.62
VPS8-215	ENST00000460158	CFP	P27918	469 aa		4.96	□□□□□ -1.62
VPS8-215	ENST00000460158	KCNJ6	P48051	423 aa		4.96	□□□□□ -1.62
VPS8-215	ENST00000460158	SEPHS1	P49903	392 aa		4.96	□□□□□ -1.62
VPS8-215	ENST00000460158	GFRA1	P56159	465 aa		4.96	□□□□□ -1.62
VPS8-215	ENST00000460158	SQSTM1	Q13501	440 aa		4.96	□□□□□ -1.62
VPS8-215	ENST00000460158	PRSS53	Q2L4Q9	553 aa		4.96	□□□□□ -1.62
VPS8-215	ENST00000460158	FAM209A	Q5JX71	171 aa		4.96	□□□□□ -1.62
VPS8-215	ENST00000460158	FYB2	Q5VWT5	728 aa		4.96	□□□□□ -1.62
VPS8-215	ENST00000460158	RCSD1	Q6JBY9	416 aa		4.96	□□□□□ -1.62
VPS8-215	ENST00000460158	ANKLE2	Q86XL3	938 aa		4.96	□□□□□ -1.62
VPS8-215	ENST00000460158	TMEM145	Q8NBT3	493 aa		4.96	□□□□□ -1.62
VPS8-215	ENST00000460158	TMEM52	Q8NDY8	209 aa		4.96	□□□□□ -1.62
VPS8-215	ENST00000460158	COPS5	Q92905	334 aa		4.96	□□□□□ -1.62
VPS8-215	ENST00000460158	OSBP2	Q969R2	916 aa		4.96	□□□□□ -1.62
VPS8-215	ENST00000460158	LIN37	Q96GY3	246 aa	Predicted RBP	4.96	□□□□□ -1.62
VPS8-215	ENST00000460158	EXOC2	Q96KP1	924 aa		4.96	□□□□□ -1.62
VPS8-215	ENST00000460158	G6PC3	Q9BUM1	346 aa		4.96	□□□□□ -1.62
VPS8-215	ENST00000460158	GPRC5C	Q9NQ84	441 aa		4.96	□□□□□ -1.62
VPS8-215	ENST00000460158	ERVK13-1	Q9NX77	482 aa		4.96	□□□□□ -1.62
VPS8-215	ENST00000460158	TBX22	Q9Y458	520 aa		4.96	□□□□□ -1.62
VPS8-215	ENST00000460158	PTCH2	Q9Y6C5	1203 aa		4.96	□□□□□ -1.62
VPS8-215	ENST00000460158	ESYT3	A0FGR9	886 aa		4.95	□□□□□ -1.62
VPS8-215	ENST00000460158	SCG5	P05408	212 aa		4.95	□□□□□ -1.62
VPS8-215	ENST00000460158	ZGLP1	P0C6A0	271 aa		4.95	□□□□□ -1.62
VPS8-215	ENST00000460158	L1CAM	P32004	1257 aa		4.95	□□□□□ -1.62
VPS8-215	ENST00000460158	CEBPA	P49715	358 aa	Predicted RBP	4.95	□□□□□ -1.62
VPS8-215	ENST00000460158	HK2	P52789	917 aa		4.95	□□□□□ -1.62
VPS8-215	ENST00000460158	LONRF2	Q1L5Z9	754 aa		4.95	□□□□□ -1.62
VPS8-215	ENST00000460158	EEF1DP3	Q658K8	133 aa		4.95	□□□□□ -1.62
VPS8-215	ENST00000460158	DENND5A	Q6IQ26	1287 aa		4.95	□□□□□ -1.62
VPS8-215	ENST00000460158	NSMF	Q6X4W1	530 aa		4.95	□□□□□ -1.62
VPS8-215	ENST00000460158	C1QL4	Q86Z23	238 aa		4.95	□□□□□ -1.62
VPS8-215	ENST00000460158	NLGN1	Q8N2Q7	840 aa		4.95	□□□□□ -1.62
VPS8-215	ENST00000460158	KREMEN2	Q8NCW0	462 aa		4.95	□□□□□ -1.62
VPS8-215	ENST00000460158	FRS2	Q8WU20	508 aa		4.95	□□□□□ -1.62
VPS8-215	ENST00000460158	LINC01599	Q8WXQ3	324 aa		4.95	□□□□□ -1.62
VPS8-215	ENST00000460158	KCTD13	Q8WZ19	329 aa		4.95	□□□□□ -1.62
VPS8-215	ENST00000460158	C1orf159	Q96HA4	380 aa		4.95	□□□□□ -1.62
VPS8-215	ENST00000460158	CCDC120	Q96HB5	630 aa		4.95	□□□□□ -1.62
VPS8-215	ENST00000460158	KIRREL1	Q96J84	757 aa		4.95	□□□□□ -1.62
VPS8-215	ENST00000460158	FCRL2	Q96LA5	508 aa	Predicted RBP	4.95	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 13 ms