RNA–Protein interactions for RNA: ENST00000458038.5

CPNE1-220, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-220ENST00000458038 AP5M1Q9H0R1 490 aa25.45■■□□□ 1.66
CPNE1-220ENST00000458038 GNEQ9Y223 722 aaKnown RBP25.45■■□□□ 1.66
CPNE1-220ENST00000458038 Q9Y3F1 56 aa25.45■■□□□ 1.66
CPNE1-220ENST00000458038 CTAGE5O15320 804 aa25.44■■□□□ 1.66
CPNE1-220ENST00000458038 ANKRD45Q5TZF3 282 aa25.44■■□□□ 1.66
CPNE1-220ENST00000458038 FAM126BQ8IXS8 530 aa25.44■■□□□ 1.66
CPNE1-220ENST00000458038 MYLIPQ8WY64 445 aa25.44■■□□□ 1.66
CPNE1-220ENST00000458038 COL25A1Q9BXS0 654 aaPredicted RBP25.44■■□□□ 1.66
CPNE1-220ENST00000458038 CYP39A1Q9NYL5 469 aa25.44■■□□□ 1.66
CPNE1-220ENST00000458038 LOC102724159A0A0B4J2E5 919 aa25.43■■□□□ 1.66
CPNE1-220ENST00000458038 ICAM1P05362 532 aa25.43■■□□□ 1.66
CPNE1-220ENST00000458038 FOSL2P15408 326 aa25.43■■□□□ 1.66
CPNE1-220ENST00000458038 IRX5P78411 483 aaPredicted RBP25.43■■□□□ 1.66
CPNE1-220ENST00000458038 PWP2Q15269 919 aaKnown RBP25.43■■□□□ 1.66
CPNE1-220ENST00000458038 FSCN1Q16658 493 aaKnown RBP25.43■■□□□ 1.66
CPNE1-220ENST00000458038 SLC43A3Q8NBI5 491 aa25.43■■□□□ 1.66
CPNE1-220ENST00000458038 BUD13Q9BRD0 619 aaKnown RBP eCLIP25.43■■□□□ 1.667e-13■■■■■ 34.6
CPNE1-220ENST00000458038 PNMA2Q9UL42 364 aa25.43■■□□□ 1.66
CPNE1-220ENST00000458038 CCPG1Q9ULG6 757 aa25.43■■□□□ 1.66
CPNE1-220ENST00000458038 NMT2O60551 498 aa25.42■■□□□ 1.66
CPNE1-220ENST00000458038 DNAJB2P25686 324 aa25.42■■□□□ 1.66
CPNE1-220ENST00000458038 BTNL9Q6UXG8 535 aa25.42■■□□□ 1.66
CPNE1-220ENST00000458038 TLK2Q86UE8 772 aa25.42■■□□□ 1.66
CPNE1-220ENST00000458038 VTA1Q9NP79 307 aa25.42■■□□□ 1.66
CPNE1-220ENST00000458038 TCP11L1Q9NUJ3 509 aa25.42■■□□□ 1.66
CPNE1-220ENST00000458038 C11orf97A0A1B0GVM6 126 aaPredicted RBP25.41■■□□□ 1.66
CPNE1-220ENST00000458038 CD4P01730 458 aa25.41■■□□□ 1.66
CPNE1-220ENST00000458038 CCDC96Q2M329 555 aa25.41■■□□□ 1.66
CPNE1-220ENST00000458038 TMEM240Q5SV17 173 aa25.41■■□□□ 1.66
CPNE1-220ENST00000458038 PSRC1Q6PGN9 363 aaPredicted RBP25.41■■□□□ 1.66
CPNE1-220ENST00000458038 MORC4Q8TE76 937 aa25.41■■□□□ 1.66
CPNE1-220ENST00000458038 INCENPQ9NQS7 918 aa25.41■■□□□ 1.66
CPNE1-220ENST00000458038 ADD3Q9UEY8 706 aaKnown RBP25.41■■□□□ 1.66
CPNE1-220ENST00000458038 VCANP13611 3396 aa25.41■■□□□ 1.66
CPNE1-220ENST00000458038 TOP1P11387 765 aaKnown RBP25.4■■□□□ 1.66
CPNE1-220ENST00000458038 PDE1AP54750 535 aa25.4■■□□□ 1.66
CPNE1-220ENST00000458038 BEX3Q00994 111 aa25.4■■□□□ 1.66
CPNE1-220ENST00000458038 MCMDC2Q4G0Z9 681 aa25.4■■□□□ 1.66
CPNE1-220ENST00000458038 MUM1L1Q5H9M0 696 aa25.4■■□□□ 1.66
CPNE1-220ENST00000458038 RASIP1Q5U651 963 aa25.4■■□□□ 1.66
CPNE1-220ENST00000458038 VPS53Q5VIR6 699 aa25.4■■□□□ 1.66
CPNE1-220ENST00000458038 CHMP4CQ96CF2 233 aa25.4■■□□□ 1.66
CPNE1-220ENST00000458038 RANBP17Q9H2T7 1088 aaKnown RBP25.4■■□□□ 1.66
CPNE1-220ENST00000458038 ASTN1O14525 1302 aa25.39■■□□□ 1.66
CPNE1-220ENST00000458038 ZMYM6O95789 1325 aa25.39■■□□□ 1.66
CPNE1-220ENST00000458038 DYNC1LI2O43237 492 aaPredicted RBP25.39■■□□□ 1.66
CPNE1-220ENST00000458038 FGAP02671 866 aa25.39■■□□□ 1.66
CPNE1-220ENST00000458038 PCP11498 1178 aaKnown RBP25.39■■□□□ 1.66
CPNE1-220ENST00000458038 CSF2RAP15509 400 aa25.39■■□□□ 1.66
CPNE1-220ENST00000458038 RRP1P56182 461 aaKnown RBP25.39■■□□□ 1.66
CPNE1-220ENST00000458038 HDAC1Q13547 482 aaPredicted RBP25.39■■□□□ 1.66
CPNE1-220ENST00000458038 ITGA7Q13683 1181 aa25.39■■□□□ 1.66
CPNE1-220ENST00000458038 TAPT1Q6NXT6 567 aa25.39■■□□□ 1.66
CPNE1-220ENST00000458038 CXCL17Q6UXB2 119 aa25.39■■□□□ 1.66
CPNE1-220ENST00000458038 NSMFQ6X4W1 530 aa25.39■■□□□ 1.66
CPNE1-220ENST00000458038 C16orf59Q7L2K0 433 aa25.39■■□□□ 1.66
CPNE1-220ENST00000458038 MTIF3Q9H2K0 278 aaKnown RBP25.39■■□□□ 1.66
CPNE1-220ENST00000458038 ZNF576Q9H609 170 aa25.39■■□□□ 1.66
CPNE1-220ENST00000458038 TOMM22Q9NS69 142 aa25.39■■□□□ 1.66
CPNE1-220ENST00000458038 SMPD1P17405 629 aa25.38■■□□□ 1.65
CPNE1-220ENST00000458038 SNAP25P60880 206 aa25.38■■□□□ 1.65
CPNE1-220ENST00000458038 TIFAQ96CG3 184 aa25.38■■□□□ 1.65
CPNE1-220ENST00000458038 TTC14Q96N46 770 aa25.38■■□□□ 1.65
CPNE1-220ENST00000458038 IL23AQ9NPF7 189 aa25.38■■□□□ 1.65
CPNE1-220ENST00000458038 TTC28Q96AY4 2481 aa25.37■■□□□ 1.65
CPNE1-220ENST00000458038 SYDE2Q5VT97 1194 aa25.37■■□□□ 1.65
CPNE1-220ENST00000458038 PPP1R12CQ9BZL4 782 aa25.37■■□□□ 1.65
CPNE1-220ENST00000458038 MTMR7Q9Y216 660 aa25.37■■□□□ 1.65
CPNE1-220ENST00000458038 LRRC37A2A6NM11 1700 aa25.37■■□□□ 1.65
CPNE1-220ENST00000458038 AAMPQ13685 434 aa25.36■■□□□ 1.65
CPNE1-220ENST00000458038 GRIN2CQ14957 1233 aa25.36■■□□□ 1.65
CPNE1-220ENST00000458038 KIAA1211Q6ZU35 1233 aa25.36■■□□□ 1.65
CPNE1-220ENST00000458038 ZNF365Q70YC5 407 aa25.36■■□□□ 1.65
CPNE1-220ENST00000458038 TMEM47Q9BQJ4 181 aa25.36■■□□□ 1.65
CPNE1-220ENST00000458038 HIPK3Q9H422 1215 aa25.36■■□□□ 1.65
CPNE1-220ENST00000458038 PDGFCQ9NRA1 345 aa25.36■■□□□ 1.65
CPNE1-220ENST00000458038 HSPD1P10809 573 aaKnown RBP25.35■■□□□ 1.65
CPNE1-220ENST00000458038 NT5C2P49902 561 aa25.35■■□□□ 1.65
CPNE1-220ENST00000458038 MFAP1P55081 439 aaKnown RBP25.35■■□□□ 1.65
CPNE1-220ENST00000458038 BAATQ14032 418 aaPredicted RBP25.35■■□□□ 1.65
CPNE1-220ENST00000458038 DUSP28Q4G0W2 176 aa25.35■■□□□ 1.65
CPNE1-220ENST00000458038 RRP12Q5JTH9 1297 aaKnown RBP25.35■■□□□ 1.65
CPNE1-220ENST00000458038 EEPD1Q7L9B9 569 aa25.35■■□□□ 1.65
CPNE1-220ENST00000458038 FBXO16Q8IX29 292 aaPredicted RBP25.35■■□□□ 1.65
CPNE1-220ENST00000458038 HERVK_113Q902F9 699 aa25.35■■□□□ 1.65
CPNE1-220ENST00000458038 MPHOSPH6Q99547 160 aaKnown RBP25.35■■□□□ 1.65
CPNE1-220ENST00000458038 LCTP09848 1927 aa25.35■■□□□ 1.65
CPNE1-220ENST00000458038 FGBP02675 491 aa25.34■■□□□ 1.65
CPNE1-220ENST00000458038 CYP2C18P33260 490 aa25.34■■□□□ 1.65
CPNE1-220ENST00000458038 SLC16A2P36021 539 aa25.34■■□□□ 1.65
CPNE1-220ENST00000458038 TTBK2Q6IQ55 1244 aa25.34■■□□□ 1.65
CPNE1-220ENST00000458038 SYMPKQ92797 1274 aaKnown RBP25.34■■□□□ 1.65
CPNE1-220ENST00000458038 FAM227BQ96M60 508 aa25.34■■□□□ 1.65
CPNE1-220ENST00000458038 POLR3EQ9NVU0 708 aa25.34■■□□□ 1.65
CPNE1-220ENST00000458038 A0A0D9SFI3 127 aa25.33■■□□□ 1.65
CPNE1-220ENST00000458038 ALDH5A1P51649 535 aaPredicted RBP25.33■■□□□ 1.65
CPNE1-220ENST00000458038 RAB30Q15771 203 aa25.33■■□□□ 1.65
CPNE1-220ENST00000458038 MFSD6Q6ZSS7 791 aa25.33■■□□□ 1.65
CPNE1-220ENST00000458038 RASGRP2Q7LDG7 609 aa25.33■■□□□ 1.65
CPNE1-220ENST00000458038 RNF41Q9H4P4 317 aaPredicted RBP25.33■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms