RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 TMPRSS7Q7RTY8 843 aa6.52□□□□□ -1.37
VPS41-209ENST00000457055 FILIP1Q7Z7B0 1213 aa6.52□□□□□ -1.37
VPS41-209ENST00000457055 HSCBQ8IWL3 235 aa6.52□□□□□ -1.37
VPS41-209ENST00000457055 ABHD4Q8TB40 342 aa6.52□□□□□ -1.37
VPS41-209ENST00000457055 TMEM87BQ96K49 555 aa6.52□□□□□ -1.37
VPS41-209ENST00000457055 ZNF512BQ96KM6 892 aaPredicted RBP6.52□□□□□ -1.37
VPS41-209ENST00000457055 CFAP53Q96M91 514 aa6.52□□□□□ -1.37
VPS41-209ENST00000457055 FAM210AQ96ND0 272 aa6.52□□□□□ -1.37
VPS41-209ENST00000457055 MIR1-1HGQ9H1L0 117 aa6.52□□□□□ -1.37
VPS41-209ENST00000457055 PIF1Q9H611 641 aa6.52□□□□□ -1.37
VPS41-209ENST00000457055 ZSWIM4Q9H7M6 989 aa6.52□□□□□ -1.37
VPS41-209ENST00000457055 DDX56Q9NY93 547 aaKnown RBP6.52□□□□□ -1.37
VPS41-209ENST00000457055 ZCCHC11Q5TAX3 1644 aaKnown RBP6.51□□□□□ -1.37
VPS41-209ENST00000457055 DNAJC25-GNG10A0A024R161 153 aa6.51□□□□□ -1.37
VPS41-209ENST00000457055 C1QTNF9P0C862 333 aa6.51□□□□□ -1.37
VPS41-209ENST00000457055 PDE4BQ07343 736 aa6.51□□□□□ -1.37
VPS41-209ENST00000457055 KCTD2Q14681 263 aa6.51□□□□□ -1.37
VPS41-209ENST00000457055 BMS1Q14692 1282 aaKnown RBP6.51□□□□□ -1.37
VPS41-209ENST00000457055 RALGPS1Q5JS13 557 aa6.51□□□□□ -1.37
VPS41-209ENST00000457055 SLC6A19Q695T7 634 aa6.51□□□□□ -1.37
VPS41-209ENST00000457055 C1QL4Q86Z23 238 aa6.51□□□□□ -1.37
VPS41-209ENST00000457055 VPS37AQ8NEZ2 397 aa6.51□□□□□ -1.37
VPS41-209ENST00000457055 PIWIL2Q8TC59 973 aaKnown RBP6.51□□□□□ -1.37
VPS41-209ENST00000457055 JDP2Q8WYK2 163 aa6.51□□□□□ -1.37
VPS41-209ENST00000457055 RUNDC1Q96C34 613 aa6.51□□□□□ -1.37
VPS41-209ENST00000457055 SUDS3Q9H7L9 328 aaPredicted RBP6.51□□□□□ -1.37
VPS41-209ENST00000457055 TMEM59LQ9UK28 342 aa6.51□□□□□ -1.37
VPS41-209ENST00000457055 SMC3Q9UQE7 1217 aa6.51□□□□□ -1.37
VPS41-209ENST00000457055 AK5Q9Y6K8 562 aa6.51□□□□□ -1.37
VPS41-209ENST00000457055 LTBP4Q8N2S1 1624 aa6.5□□□□□ -1.37
VPS41-209ENST00000457055 ESR1P03372 595 aa6.5□□□□□ -1.37
VPS41-209ENST00000457055 LDHCP07864 332 aa6.5□□□□□ -1.37
VPS41-209ENST00000457055 HSD3B2P26439 372 aa6.5□□□□□ -1.37
VPS41-209ENST00000457055 CASQ1P31415 396 aa6.5□□□□□ -1.37
VPS41-209ENST00000457055 HSPA1LP34931 641 aa6.5□□□□□ -1.37
VPS41-209ENST00000457055 CEBPAP49715 358 aaPredicted RBP6.5□□□□□ -1.37
VPS41-209ENST00000457055 HK2P52789 917 aa6.5□□□□□ -1.37
VPS41-209ENST00000457055 HMGN5P82970 282 aaKnown RBP6.5□□□□□ -1.37
VPS41-209ENST00000457055 KIAA2012Q0VF49 1180 aa6.5□□□□□ -1.37
VPS41-209ENST00000457055 CREG2Q8IUH2 290 aa6.5□□□□□ -1.37
VPS41-209ENST00000457055 PMFBP1Q8TBY8 1022 aa6.5□□□□□ -1.37
VPS41-209ENST00000457055 PPM1EQ8WY54 764 aa6.5□□□□□ -1.37
VPS41-209ENST00000457055 PCGF6Q9BYE7 350 aa6.5□□□□□ -1.37
VPS41-209ENST00000457055 EPB41L4BQ9H329 900 aa6.5□□□□□ -1.37
VPS41-209ENST00000457055 CASS4Q9NQ75 786 aa6.5□□□□□ -1.37
VPS41-209ENST00000457055 IFT57Q9NWB7 429 aa6.5□□□□□ -1.37
VPS41-209ENST00000457055 CD109Q6YHK3 1445 aa6.5□□□□□ -1.37
VPS41-209ENST00000457055 WASH4PA8MWX3 477 aa6.49□□□□□ -1.37
VPS41-209ENST00000457055 GOLGA6L6A8MZA4 724 aa6.49□□□□□ -1.37
VPS41-209ENST00000457055 NPHP1O15259 732 aa6.49□□□□□ -1.37
VPS41-209ENST00000457055 IPO8O15397 1037 aaKnown RBP6.49□□□□□ -1.37
VPS41-209ENST00000457055 HIP1RO75146 1068 aa6.49□□□□□ -1.37
VPS41-209ENST00000457055 LDHAP00338 332 aaKnown RBP6.49□□□□□ -1.37
VPS41-209ENST00000457055 KRT1P04264 644 aa6.49□□□□□ -1.37
VPS41-209ENST00000457055 COL6A1P12109 1028 aa6.49□□□□□ -1.37
VPS41-209ENST00000457055 SLC20A2Q08357 652 aa6.49□□□□□ -1.37
VPS41-209ENST00000457055 MLECQ14165 292 aa6.49□□□□□ -1.37
VPS41-209ENST00000457055 LCNL1Q6ZST4 164 aa6.49□□□□□ -1.37
VPS41-209ENST00000457055 MCATQ8IVS2 390 aaKnown RBP6.49□□□□□ -1.37
VPS41-209ENST00000457055 RPUSD2Q8IZ73 545 aaKnown RBP6.49□□□□□ -1.37
VPS41-209ENST00000457055 SVIPQ8NHG7 77 aa6.49□□□□□ -1.37
VPS41-209ENST00000457055 DNAJB8Q8NHS0 232 aa6.49□□□□□ -1.37
VPS41-209ENST00000457055 MYLIPQ8WY64 445 aa6.49□□□□□ -1.37
VPS41-209ENST00000457055 ITFG2Q969R8 447 aa6.49□□□□□ -1.37
VPS41-209ENST00000457055 CCDC47Q96A33 483 aaKnown RBP6.49□□□□□ -1.37
VPS41-209ENST00000457055 Q96M66 194 aa6.49□□□□□ -1.37
VPS41-209ENST00000457055 DUSP9Q99956 384 aaKnown RBP6.49□□□□□ -1.37
VPS41-209ENST00000457055 LRRC27Q9C0I9 530 aa6.49□□□□□ -1.37
VPS41-209ENST00000457055 CXorf56Q9H5V9 222 aa6.49□□□□□ -1.37
VPS41-209ENST00000457055 RETREG1Q9H6L5 497 aa6.49□□□□□ -1.37
VPS41-209ENST00000457055 DCP1AQ9NPI6 582 aaPredicted RBP6.49□□□□□ -1.37
VPS41-209ENST00000457055 RNF19AQ9NV58 838 aa6.49□□□□□ -1.37
VPS41-209ENST00000457055 ODF2LQ9ULJ1 636 aa6.49□□□□□ -1.37
VPS41-209ENST00000457055 SIGLEC1Q9BZZ2 1709 aa6.49□□□□□ -1.37
VPS41-209ENST00000457055 KIAA0586Q9BVV6 1533 aa6.49□□□□□ -1.37
VPS41-209ENST00000457055 ANKRD33BA6NCL7 494 aa6.48□□□□□ -1.37
VPS41-209ENST00000457055 PES1O00541 588 aaKnown RBP6.48□□□□□ -1.37
VPS41-209ENST00000457055 PLIN1O60240 522 aa6.48□□□□□ -1.37
VPS41-209ENST00000457055 FGAP02671 866 aa6.48□□□□□ -1.37
VPS41-209ENST00000457055 TMEM253P0C7T8 217 aa6.48□□□□□ -1.37
VPS41-209ENST00000457055 ZSCAN22P10073 491 aaPredicted RBP6.48□□□□□ -1.37
VPS41-209ENST00000457055 TFE3P19532 575 aaPredicted RBP6.48□□□□□ -1.37
VPS41-209ENST00000457055 TPP2P29144 1249 aaPredicted RBP6.48□□□□□ -1.37
VPS41-209ENST00000457055 ERVFC1P60507 584 aa6.48□□□□□ -1.37
VPS41-209ENST00000457055 RPL6Q02878 288 aaKnown RBP6.48□□□□□ -1.37
VPS41-209ENST00000457055 NFE2L2Q16236 605 aa6.48□□□□□ -1.37
VPS41-209ENST00000457055 MAP9Q49MG5 647 aa6.48□□□□□ -1.37
VPS41-209ENST00000457055 HSP90B2PQ58FF3 399 aa6.48□□□□□ -1.37
VPS41-209ENST00000457055 MEI1Q5TIA1 1274 aa6.48□□□□□ -1.37
VPS41-209ENST00000457055 CCSAPQ6IQ19 270 aaPredicted RBP6.48□□□□□ -1.37
VPS41-209ENST00000457055 ANKRD13BQ86YJ7 626 aa6.48□□□□□ -1.37
VPS41-209ENST00000457055 PRPF38AQ8NAV1 312 aaKnown RBP6.48□□□□□ -1.37
VPS41-209ENST00000457055 JARID2Q92833 1246 aaPredicted RBP6.48□□□□□ -1.37
VPS41-209ENST00000457055 ACSF2Q96CM8 615 aaPredicted RBP6.48□□□□□ -1.37
VPS41-209ENST00000457055 CEP89Q96ST8 783 aa6.48□□□□□ -1.37
VPS41-209ENST00000457055 TRIT1Q9H3H1 467 aaKnown RBP6.48□□□□□ -1.37
VPS41-209ENST00000457055 KCNK12Q9HB15 430 aa6.48□□□□□ -1.37
VPS41-209ENST00000457055 ADAM30Q9UKF2 790 aa6.48□□□□□ -1.37
VPS41-209ENST00000457055 YEATS2Q9ULM3 1422 aa6.48□□□□□ -1.37
VPS41-209ENST00000457055 ERICH3Q5RHP9 1530 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms