RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 FAM109BQ6ICB4 259 aaPredicted RBP9.17□□□□□ -0.94
CD44-211ENST00000442151 CCDC129Q6ZRS4 1044 aa9.17□□□□□ -0.94
CD44-211ENST00000442151 RILPL2Q969X0 211 aa9.17□□□□□ -0.94
CD44-211ENST00000442151 TOX2Q96NM4 488 aa9.17□□□□□ -0.94
CD44-211ENST00000442151 NUP88Q99567 741 aaPredicted RBP9.17□□□□□ -0.94
CD44-211ENST00000442151 ADD3Q9UEY8 706 aaKnown RBP9.17□□□□□ -0.94
CD44-211ENST00000442151 CTNNA3Q9UI47 895 aa9.17□□□□□ -0.94
CD44-211ENST00000442151 VPS9D1Q9Y2B5 631 aa9.17□□□□□ -0.94
CD44-211ENST00000442151 CABYRO75952 493 aa9.16□□□□□ -0.94
CD44-211ENST00000442151 ZNF865P0CJ78 1059 aaPredicted RBP9.16□□□□□ -0.94
CD44-211ENST00000442151 FAM47AQ5JRC9 791 aa9.16□□□□□ -0.94
CD44-211ENST00000442151 MFSD6Q6ZSS7 791 aa9.16□□□□□ -0.94
CD44-211ENST00000442151 LRRC47Q8N1G4 583 aaKnown RBP9.16□□□□□ -0.94
CD44-211ENST00000442151 VTI1AQ96AJ9 217 aa9.16□□□□□ -0.94
CD44-211ENST00000442151 GLT1D1Q96MS3 346 aa9.16□□□□□ -0.94
CD44-211ENST00000442151 TRERF1Q96PN7 1200 aa9.16□□□□□ -0.94
CD44-211ENST00000442151 SEC62Q99442 399 aaKnown RBP9.16□□□□□ -0.94
CD44-211ENST00000442151 AP5M1Q9H0R1 490 aa9.16□□□□□ -0.94
CD44-211ENST00000442151 STARD7Q9NQZ5 370 aa9.16□□□□□ -0.94
CD44-211ENST00000442151 ZHX1Q9UKY1 873 aaPredicted RBP9.16□□□□□ -0.94
CD44-211ENST00000442151 ELP1O95163 1332 aa9.16□□□□□ -0.94
CD44-211ENST00000442151 ZMYM6O95789 1325 aa9.16□□□□□ -0.94
CD44-211ENST00000442151 A0A0G2JMZ2 1700 aa9.16□□□□□ -0.94
CD44-211ENST00000442151 ZNFX1Q9P2E3 1918 aaKnown RBP9.15□□□□□ -0.94
CD44-211ENST00000442151 FGRP09769 529 aa9.15□□□□□ -0.94
CD44-211ENST00000442151 MCCP23508 829 aa9.15□□□□□ -0.94
CD44-211ENST00000442151 MDM2Q00987 491 aaPredicted RBP9.15□□□□□ -0.94
CD44-211ENST00000442151 CCDC96Q2M329 555 aa9.15□□□□□ -0.94
CD44-211ENST00000442151 IQSEC1Q6DN90 963 aa9.15□□□□□ -0.94
CD44-211ENST00000442151 IQCA1Q86XH1 822 aa9.15□□□□□ -0.94
CD44-211ENST00000442151 ESR2Q92731 530 aa9.15□□□□□ -0.94
CD44-211ENST00000442151 PRDM5Q9NQX1 630 aaPredicted RBP9.15□□□□□ -0.94
CD44-211ENST00000442151 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.15□□□□□ -0.94
CD44-211ENST00000442151 CIZ1Q9ULV3 898 aaPredicted RBP9.15□□□□□ -0.94
CD44-211ENST00000442151 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.15□□□□□ -0.94
CD44-211ENST00000442151 Q9Y3F1 56 aa9.15□□□□□ -0.94
CD44-211ENST00000442151 ZNF213O14771 459 aa9.15□□□□□ -0.95
CD44-211ENST00000442151 FGAP02671 866 aa9.15□□□□□ -0.95
CD44-211ENST00000442151 CLTBP09497 229 aa9.15□□□□□ -0.95
CD44-211ENST00000442151 RAG1P15918 1043 aa9.15□□□□□ -0.95
CD44-211ENST00000442151 CST5P28325 142 aaPredicted RBP9.15□□□□□ -0.95
CD44-211ENST00000442151 CTDSPL2Q05D32 466 aa9.15□□□□□ -0.95
CD44-211ENST00000442151 TRAF1Q13077 416 aa9.15□□□□□ -0.95
CD44-211ENST00000442151 BRDTQ58F21 947 aaPredicted RBP9.15□□□□□ -0.95
CD44-211ENST00000442151 ANO1Q5XXA6 986 aa9.15□□□□□ -0.95
CD44-211ENST00000442151 NOL8Q76FK4 1167 aaKnown RBP9.15□□□□□ -0.95
CD44-211ENST00000442151 CHD1LQ86WJ1 897 aa9.15□□□□□ -0.95
CD44-211ENST00000442151 SMC5Q8IY18 1101 aa9.15□□□□□ -0.95
CD44-211ENST00000442151 OSBPL3Q9H4L5 887 aa9.15□□□□□ -0.95
CD44-211ENST00000442151 DIAPH3Q9NSV4 1193 aa9.15□□□□□ -0.95
CD44-211ENST00000442151 RNF146Q9NTX7 359 aa9.15□□□□□ -0.95
CD44-211ENST00000442151 TMEM39AQ9NV64 488 aa9.15□□□□□ -0.95
CD44-211ENST00000442151 RLFQ13129 1914 aa9.14□□□□□ -0.95
CD44-211ENST00000442151 SALL3Q9BXA9 1300 aa9.14□□□□□ -0.95
CD44-211ENST00000442151 GOLGA8CPA6NN73 597 aa9.14□□□□□ -0.95
CD44-211ENST00000442151 SMIM22K7EJ46 135 aa9.14□□□□□ -0.95
CD44-211ENST00000442151 GFRA3O60609 400 aa9.14□□□□□ -0.95
CD44-211ENST00000442151 SNAI1O95863 264 aaPredicted RBP9.14□□□□□ -0.95
CD44-211ENST00000442151 HSPD1P10809 573 aaKnown RBP9.14□□□□□ -0.95
CD44-211ENST00000442151 ALAS1P13196 640 aa9.14□□□□□ -0.95
CD44-211ENST00000442151 NOVP48745 357 aa9.14□□□□□ -0.95
CD44-211ENST00000442151 ACLYP53396 1101 aa9.14□□□□□ -0.95
CD44-211ENST00000442151 GJA9P57773 515 aa9.14□□□□□ -0.95
CD44-211ENST00000442151 TLE2Q04725 743 aa9.14□□□□□ -0.95
CD44-211ENST00000442151 TRIM60Q495X7 471 aa9.14□□□□□ -0.95
CD44-211ENST00000442151 RRP12Q5JTH9 1297 aaKnown RBP9.14□□□□□ -0.95
CD44-211ENST00000442151 AKNAD1Q5T1N1 836 aa9.14□□□□□ -0.95
CD44-211ENST00000442151 GPATCH4Q5T3I0 446 aaKnown RBP9.14□□□□□ -0.95
CD44-211ENST00000442151 ZNF787Q6DD87 383 aa9.14□□□□□ -0.95
CD44-211ENST00000442151 BTNL9Q6UXG8 535 aa9.14□□□□□ -0.95
CD44-211ENST00000442151 DEFB123Q8N688 67 aa9.14□□□□□ -0.95
CD44-211ENST00000442151 KLHDC9Q8NEP7 349 aa9.14□□□□□ -0.95
CD44-211ENST00000442151 FERMT2Q96AC1 680 aa9.14□□□□□ -0.95
CD44-211ENST00000442151 SLC4A5Q9BY07 1137 aa9.14□□□□□ -0.95
CD44-211ENST00000442151 LNPKQ9C0E8 428 aa9.14□□□□□ -0.95
CD44-211ENST00000442151 CCPG1Q9ULG6 757 aa9.14□□□□□ -0.95
CD44-211ENST00000442151 PRR12Q9ULL5 1215 aa9.14□□□□□ -0.95
CD44-211ENST00000442151 RIPK3Q9Y572 518 aa9.14□□□□□ -0.95
CD44-211ENST00000442151 CCDC171Q6TFL3 1326 aa9.14□□□□□ -0.95
CD44-211ENST00000442151 A0A0U1RQG5 324 aaPredicted RBP9.13□□□□□ -0.95
CD44-211ENST00000442151 KIAA0355O15063 1070 aa9.13□□□□□ -0.95
CD44-211ENST00000442151 PGK1P00558 417 aa9.13□□□□□ -0.95
CD44-211ENST00000442151 ICAM1P05362 532 aa9.13□□□□□ -0.95
CD44-211ENST00000442151 SDSP20132 328 aa9.13□□□□□ -0.95
CD44-211ENST00000442151 TNFAIP2Q03169 654 aa9.13□□□□□ -0.95
CD44-211ENST00000442151 KCNA10Q16322 511 aa9.13□□□□□ -0.95
CD44-211ENST00000442151 GNASQ5JWF2 1037 aa9.13□□□□□ -0.95
CD44-211ENST00000442151 SYDE2Q5VT97 1194 aa9.13□□□□□ -0.95
CD44-211ENST00000442151 ARMCX2Q7L311 632 aa9.13□□□□□ -0.95
CD44-211ENST00000442151 ANKRD33Q7Z3H0 272 aa9.13□□□□□ -0.95
CD44-211ENST00000442151 DGKHQ86XP1 1220 aa9.13□□□□□ -0.95
CD44-211ENST00000442151 SLC17A8Q8NDX2 589 aa9.13□□□□□ -0.95
CD44-211ENST00000442151 OTUD7AQ8TE49 926 aaPredicted RBP9.13□□□□□ -0.95
CD44-211ENST00000442151 RUFY2Q8WXA3 655 aa9.13□□□□□ -0.95
CD44-211ENST00000442151 KRT23Q9C075 422 aa9.13□□□□□ -0.95
CD44-211ENST00000442151 UPF3AQ9H1J1 476 aaKnown RBP9.13□□□□□ -0.95
CD44-211ENST00000442151 MTIF3Q9H2K0 278 aaKnown RBP9.13□□□□□ -0.95
CD44-211ENST00000442151 CNNM2Q9H8M5 875 aa9.13□□□□□ -0.95
CD44-211ENST00000442151 VTA1Q9NP79 307 aa9.13□□□□□ -0.95
CD44-211ENST00000442151 STXBP5LQ9Y2K9 1186 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms