RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 LRRC56Q8IYG6 542 aaPredicted RBP5.35□□□□□ -1.55
VPS41-207ENST00000439468 C19orf47Q8N9M1 422 aaKnown RBP5.35□□□□□ -1.55
VPS41-207ENST00000439468 ZSCAN18Q8TBC5 510 aaPredicted RBP5.35□□□□□ -1.55
VPS41-207ENST00000439468 FGD4Q96M96 766 aa5.35□□□□□ -1.55
VPS41-207ENST00000439468 SLC12A9Q9BXP2 914 aa5.35□□□□□ -1.55
VPS41-207ENST00000439468 TRIM55Q9BYV6 548 aa5.35□□□□□ -1.55
VPS41-207ENST00000439468 MCOLN1Q9GZU1 580 aa5.35□□□□□ -1.55
VPS41-207ENST00000439468 OSBPL2Q9H1P3 480 aa5.35□□□□□ -1.55
VPS41-207ENST00000439468 CRTAC1Q9NQ79 661 aa5.35□□□□□ -1.55
VPS41-207ENST00000439468 ACTR10Q9NZ32 417 aa5.35□□□□□ -1.55
VPS41-207ENST00000439468 WHRNQ9P202 907 aa5.35□□□□□ -1.55
VPS41-207ENST00000439468 R3HCC1Q9Y3T6 440 aaKnown RBP5.35□□□□□ -1.55
VPS41-207ENST00000439468 A0A1W2PQJ5 194 aa5.34□□□□□ -1.55
VPS41-207ENST00000439468 FAM221BA6H8Z2 402 aa5.34□□□□□ -1.55
VPS41-207ENST00000439468 CBFA2T2O43439 604 aa5.34□□□□□ -1.55
VPS41-207ENST00000439468 PPM1BO75688 479 aa5.34□□□□□ -1.55
VPS41-207ENST00000439468 PNLIPP16233 465 aa5.34□□□□□ -1.55
VPS41-207ENST00000439468 GLDCP23378 1020 aa5.34□□□□□ -1.55
VPS41-207ENST00000439468 CYP4F8P98187 520 aa5.34□□□□□ -1.55
VPS41-207ENST00000439468 SERINC3Q13530 473 aa5.34□□□□□ -1.55
VPS41-207ENST00000439468 KCNA10Q16322 511 aa5.34□□□□□ -1.55
VPS41-207ENST00000439468 KIAA1211LQ6NV74 962 aa5.34□□□□□ -1.55
VPS41-207ENST00000439468 VHLLQ6RSH7 139 aa5.34□□□□□ -1.55
VPS41-207ENST00000439468 SLCO6A1Q86UG4 719 aa5.34□□□□□ -1.55
VPS41-207ENST00000439468 SGPP1Q9BX95 441 aa5.34□□□□□ -1.55
VPS41-207ENST00000439468 ZNF552Q9H707 407 aaPredicted RBP5.34□□□□□ -1.55
VPS41-207ENST00000439468 SIRT5Q9NXA8 310 aa5.34□□□□□ -1.55
VPS41-207ENST00000439468 IMPACTQ9P2X3 320 aa5.34□□□□□ -1.55
VPS41-207ENST00000439468 CDK11AQ9UQ88 783 aaPredicted RBP5.34□□□□□ -1.55
VPS41-207ENST00000439468 MYOCOSA0A1B0GUC4 107 aa5.33□□□□□ -1.56
VPS41-207ENST00000439468 A0A1W2PQ45 241 aaPredicted RBP5.33□□□□□ -1.56
VPS41-207ENST00000439468 A0A1W2PQY0 241 aa5.33□□□□□ -1.56
VPS41-207ENST00000439468 NUDT19A8MXV4 375 aa5.33□□□□□ -1.56
VPS41-207ENST00000439468 STXBP3O00186 592 aa5.33□□□□□ -1.56
VPS41-207ENST00000439468 PEX10O60683 326 aa5.33□□□□□ -1.56
VPS41-207ENST00000439468 SEMA7AO75326 666 aa5.33□□□□□ -1.56
VPS41-207ENST00000439468 EPHX1P07099 455 aa5.33□□□□□ -1.56
VPS41-207ENST00000439468 IFNGR1P15260 489 aa5.33□□□□□ -1.56
VPS41-207ENST00000439468 CASP7P55210 303 aa5.33□□□□□ -1.56
VPS41-207ENST00000439468 DLG4P78352 724 aa5.33□□□□□ -1.56
VPS41-207ENST00000439468 SRSF3P84103 164 aaKnown RBP5.33□□□□□ -1.56
VPS41-207ENST00000439468 LAPTM5Q13571 262 aa5.33□□□□□ -1.56
VPS41-207ENST00000439468 DPY19L1Q2PZI1 675 aa5.33□□□□□ -1.56
VPS41-207ENST00000439468 HLA-DQA1Q5Y7H0 255 aa5.33□□□□□ -1.56
VPS41-207ENST00000439468 OLFML2BQ68BL8 750 aa5.33□□□□□ -1.56
VPS41-207ENST00000439468 CIAPIN1Q6FI81 312 aa5.33□□□□□ -1.56
VPS41-207ENST00000439468 C6orf15Q6UXA7 325 aaPredicted RBP5.33□□□□□ -1.56
VPS41-207ENST00000439468 CYP2R1Q6VVX0 501 aa5.33□□□□□ -1.56
VPS41-207ENST00000439468 PPP1R14AQ96A00 147 aa5.33□□□□□ -1.56
VPS41-207ENST00000439468 JMJD8Q96S16 334 aa5.33□□□□□ -1.56
VPS41-207ENST00000439468 SMG5Q9UPR3 1016 aaKnown RBP5.33□□□□□ -1.56
VPS41-207ENST00000439468 DIS3Q9Y2L1 958 aaKnown RBP5.33□□□□□ -1.56
VPS41-207ENST00000439468 NUAK1O60285 661 aa5.32□□□□□ -1.56
VPS41-207ENST00000439468 DDAH1O94760 285 aa5.32□□□□□ -1.56
VPS41-207ENST00000439468 GJB6O95452 261 aa5.32□□□□□ -1.56
VPS41-207ENST00000439468 TBC1D8O95759 1140 aa5.32□□□□□ -1.56
VPS41-207ENST00000439468 KRT1P04264 644 aa5.32□□□□□ -1.56
VPS41-207ENST00000439468 MPOP05164 745 aa5.32□□□□□ -1.56
VPS41-207ENST00000439468 CFPP27918 469 aa5.32□□□□□ -1.56
VPS41-207ENST00000439468 RAB3GAP1Q15042 981 aa5.32□□□□□ -1.56
VPS41-207ENST00000439468 TNNI3KQ59H18 835 aa5.32□□□□□ -1.56
VPS41-207ENST00000439468 MRM1Q6IN84 353 aaKnown RBP5.32□□□□□ -1.56
VPS41-207ENST00000439468 FCRL3Q96P31 734 aaPredicted RBP5.32□□□□□ -1.56
VPS41-207ENST00000439468 SRPK1Q96SB4 655 aaKnown RBP5.32□□□□□ -1.56
VPS41-207ENST00000439468 KLHL25Q9H0H3 589 aa5.32□□□□□ -1.56
VPS41-207ENST00000439468 CD320Q9NPF0 282 aa5.32□□□□□ -1.56
VPS41-207ENST00000439468 A0A087WZG4 1122 aa5.31□□□□□ -1.56
VPS41-207ENST00000439468 TEX51A0A1B0GUA7 166 aa5.31□□□□□ -1.56
VPS41-207ENST00000439468 U2SURPO15042 1029 aaKnown RBP5.31□□□□□ -1.56
VPS41-207ENST00000439468 FGF10O15520 208 aaPredicted RBP5.31□□□□□ -1.56
VPS41-207ENST00000439468 SMARCA5O60264 1052 aaPredicted RBP5.31□□□□□ -1.56
VPS41-207ENST00000439468 VAMP4O75379 141 aa5.31□□□□□ -1.56
VPS41-207ENST00000439468 MED14OSP0DP75 135 aa5.31□□□□□ -1.56
VPS41-207ENST00000439468 VIPR1P32241 457 aa5.31□□□□□ -1.56
VPS41-207ENST00000439468 LINC00310P59036 64 aa5.31□□□□□ -1.56
VPS41-207ENST00000439468 AMPD2Q01433 879 aa5.31□□□□□ -1.56
VPS41-207ENST00000439468 DDR2Q16832 855 aa5.31□□□□□ -1.56
VPS41-207ENST00000439468 SOGA3Q5TF21 947 aa5.31□□□□□ -1.56
VPS41-207ENST00000439468 TMC6Q7Z403 805 aa5.31□□□□□ -1.56
VPS41-207ENST00000439468 TMEM52Q8NDY8 209 aa5.31□□□□□ -1.56
VPS41-207ENST00000439468 KLHL6Q8WZ60 621 aa5.31□□□□□ -1.56
VPS41-207ENST00000439468 PTCHD1Q96NR3 888 aa5.31□□□□□ -1.56
VPS41-207ENST00000439468 SNTG2Q9NY99 539 aa5.31□□□□□ -1.56
VPS41-207ENST00000439468 SIRPGQ9P1W8 387 aa5.31□□□□□ -1.56
VPS41-207ENST00000439468 CGGBP1Q9UFW8 167 aaPredicted RBP5.31□□□□□ -1.56
VPS41-207ENST00000439468 CNOT6Q9ULM6 557 aaKnown RBP5.31□□□□□ -1.56
VPS41-207ENST00000439468 ANKRD34BA5PLL1 514 aa5.3□□□□□ -1.56
VPS41-207ENST00000439468 ABLIM1O14639 778 aa5.3□□□□□ -1.56
VPS41-207ENST00000439468 ZSCAN22P10073 491 aaPredicted RBP5.3□□□□□ -1.56
VPS41-207ENST00000439468 NAT2P11245 290 aa5.3□□□□□ -1.56
VPS41-207ENST00000439468 TACR1P25103 407 aa5.3□□□□□ -1.56
VPS41-207ENST00000439468 SEPHS1P49903 392 aa5.3□□□□□ -1.56
VPS41-207ENST00000439468 ERVFRD-1P60508 538 aa5.3□□□□□ -1.56
VPS41-207ENST00000439468 TMEM62Q0P6H9 643 aa5.3□□□□□ -1.56
VPS41-207ENST00000439468 RASA3Q14644 834 aa5.3□□□□□ -1.56
VPS41-207ENST00000439468 FXNQ16595 210 aa5.3□□□□□ -1.56
VPS41-207ENST00000439468 NBPF6Q5VWK0 638 aa5.3□□□□□ -1.56
VPS41-207ENST00000439468 BICRALQ6AI39 1079 aa5.3□□□□□ -1.56
VPS41-207ENST00000439468 FAM178BQ8IXR5 827 aa5.3□□□□□ -1.56
VPS41-207ENST00000439468 NBPF4Q96M43 638 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms