RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 NAA35Q5VZE5 725 aa16.86■□□□□ 0.29
PTPRF-206ENST00000429895 MCUQ8NE86 351 aa16.86■□□□□ 0.29
PTPRF-206ENST00000429895 DDX27Q96GQ7 796 aaKnown RBP16.86■□□□□ 0.29
PTPRF-206ENST00000429895 ZMYM6O95789 1325 aa16.86■□□□□ 0.29
PTPRF-206ENST00000429895 N4BP1O75113 896 aaKnown RBP16.86■□□□□ 0.29
PTPRF-206ENST00000429895 RNF40O75150 1001 aa16.86■□□□□ 0.29
PTPRF-206ENST00000429895 PHLDB2Q86SQ0 1253 aa16.86■□□□□ 0.29
PTPRF-206ENST00000429895 RFX6Q8HWS3 928 aa16.86■□□□□ 0.29
PTPRF-206ENST00000429895 PCDHB4Q9Y5E5 795 aa16.86■□□□□ 0.29
PTPRF-206ENST00000429895 THAP12O43422 761 aa16.85■□□□□ 0.29
PTPRF-206ENST00000429895 KRT3P12035 628 aa16.85■□□□□ 0.29
PTPRF-206ENST00000429895 KCTD1Q719H9 257 aa16.85■□□□□ 0.29
PTPRF-206ENST00000429895 GOLGA5Q8TBA6 731 aa16.85■□□□□ 0.29
PTPRF-206ENST00000429895 EEF2KMTQ96G04 330 aa16.85■□□□□ 0.29
PTPRF-206ENST00000429895 ANAPC5Q9UJX4 755 aa16.85■□□□□ 0.29
PTPRF-206ENST00000429895 PTPN22Q9Y2R2 807 aa16.85■□□□□ 0.29
PTPRF-206ENST00000429895 RABGAP1Q9Y3P9 1069 aa16.85■□□□□ 0.29
PTPRF-206ENST00000429895 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.85■□□□□ 0.291e-7■■■□□ 16
PTPRF-206ENST00000429895 SPDYE2BA6NHP3 402 aa16.85■□□□□ 0.29
PTPRF-206ENST00000429895 SPDYE6P0CI01 402 aa16.85■□□□□ 0.29
PTPRF-206ENST00000429895 RINT1Q6NUQ1 792 aa16.85■□□□□ 0.29
PTPRF-206ENST00000429895 RNF10Q8N5U6 811 aaKnown RBP16.85■□□□□ 0.29
PTPRF-206ENST00000429895 PFDN6O15212 129 aa16.85■□□□□ 0.29
PTPRF-206ENST00000429895 PCDHA1Q9Y5I3 950 aa16.85■□□□□ 0.29
PTPRF-206ENST00000429895 COL17A1Q9UMD9 1497 aaPredicted RBP16.84■□□□□ 0.29
PTPRF-206ENST00000429895 BAG2O95816 211 aa16.84■□□□□ 0.29
PTPRF-206ENST00000429895 ZNF148Q9UQR1 794 aa16.84■□□□□ 0.29
PTPRF-206ENST00000429895 S100BP04271 92 aaPredicted RBP16.84■□□□□ 0.29
PTPRF-206ENST00000429895 ATF2P15336 505 aa16.84■□□□□ 0.29
PTPRF-206ENST00000429895 MYL7Q01449 175 aa16.84■□□□□ 0.29
PTPRF-206ENST00000429895 POTEDQ86YR6 584 aa16.84■□□□□ 0.29
PTPRF-206ENST00000429895 MYLK4Q86YV6 388 aaPredicted RBP16.84■□□□□ 0.29
PTPRF-206ENST00000429895 ZBTB38Q8NAP3 1195 aaPredicted RBP16.84■□□□□ 0.29
PTPRF-206ENST00000429895 FAM71BQ8TC56 605 aa16.84■□□□□ 0.29
PTPRF-206ENST00000429895 ABCF3Q9NUQ8 709 aa16.84■□□□□ 0.29
PTPRF-206ENST00000429895 COL4A3BPQ9Y5P4 624 aa16.84■□□□□ 0.29
PTPRF-206ENST00000429895 RPN1P04843 607 aaKnown RBP16.84■□□□□ 0.29
PTPRF-206ENST00000429895 PRPSAP1Q14558 356 aa16.84■□□□□ 0.29
PTPRF-206ENST00000429895 OR8K1Q8NGG5 319 aa16.84■□□□□ 0.29
PTPRF-206ENST00000429895 H0YCG3 227 aa16.84■□□□□ 0.29
PTPRF-206ENST00000429895 TFDP1Q14186 410 aa16.84■□□□□ 0.29
PTPRF-206ENST00000429895 PGBD1Q96JS3 809 aa16.84■□□□□ 0.29
PTPRF-206ENST00000429895 IRAK4Q9NWZ3 460 aa16.84■□□□□ 0.29
PTPRF-206ENST00000429895 KIAA1024Q9UPX6 916 aa16.84■□□□□ 0.29
PTPRF-206ENST00000429895 RNASELQ05823 741 aaKnown RBP16.84■□□□□ 0.29
PTPRF-206ENST00000429895 PPFIA1Q13136 1202 aa16.84■□□□□ 0.29
PTPRF-206ENST00000429895 RSRC2Q7L4I2 434 aaKnown RBP16.84■□□□□ 0.29
PTPRF-206ENST00000429895 TRIM58Q8NG06 486 aa16.84■□□□□ 0.29
PTPRF-206ENST00000429895 AP5M1Q9H0R1 490 aa16.84■□□□□ 0.29
PTPRF-206ENST00000429895 FNDC3AQ9Y2H6 1198 aaKnown RBP16.84■□□□□ 0.29
PTPRF-206ENST00000429895 RNF8O76064 485 aa16.83■□□□□ 0.29
PTPRF-206ENST00000429895 GDF11O95390 407 aa16.83■□□□□ 0.29
PTPRF-206ENST00000429895 CSRNP1Q96S65 589 aa16.83■□□□□ 0.29
PTPRF-206ENST00000429895 ZNF853P0CG23 659 aa16.83■□□□□ 0.29
PTPRF-206ENST00000429895 NSFP46459 744 aaKnown RBP16.83■□□□□ 0.29
PTPRF-206ENST00000429895 ODR4Q5SWX8 454 aa16.83■□□□□ 0.29
PTPRF-206ENST00000429895 RAPH1Q70E73 1250 aa16.83■□□□□ 0.29
PTPRF-206ENST00000429895 FLAD1Q8NFF5 587 aa16.83■□□□□ 0.29
PTPRF-206ENST00000429895 SYMPKQ92797 1274 aaKnown RBP16.83■□□□□ 0.29
PTPRF-206ENST00000429895 BAIAP2L1Q9UHR4 511 aa16.83■□□□□ 0.29
PTPRF-206ENST00000429895 ADALQ6DHV7 355 aa16.83■□□□□ 0.28
PTPRF-206ENST00000429895 KRT26Q7Z3Y9 468 aa16.83■□□□□ 0.28
PTPRF-206ENST00000429895 GREM2Q9H772 168 aa16.83■□□□□ 0.28
PTPRF-206ENST00000429895 HYOU1Q9Y4L1 999 aa16.83■□□□□ 0.28
PTPRF-206ENST00000429895 PTPRKQ15262 1439 aa16.83■□□□□ 0.28
PTPRF-206ENST00000429895 HNRNPDLO14979 420 aaKnown RBP16.83■□□□□ 0.28
PTPRF-206ENST00000429895 HSPD1P10809 573 aaKnown RBP16.83■□□□□ 0.28
PTPRF-206ENST00000429895 YWHAGP61981 247 aaKnown RBP eCLIP16.83■□□□□ 0.28
PTPRF-206ENST00000429895 ZNF804BA4D1E1 1349 aa16.83■□□□□ 0.28
PTPRF-206ENST00000429895 PHKG2P15735 406 aa16.83■□□□□ 0.28
PTPRF-206ENST00000429895 OSBPP22059 807 aa16.83■□□□□ 0.28
PTPRF-206ENST00000429895 LRCH2Q5VUJ6 765 aa16.83■□□□□ 0.28
PTPRF-206ENST00000429895 ZNF577Q9BSK1 485 aa16.83■□□□□ 0.28
PTPRF-206ENST00000429895 DBNDD1Q9H9R9 158 aa16.83■□□□□ 0.28
PTPRF-206ENST00000429895 IPO11Q9UI26 975 aaKnown RBP16.83■□□□□ 0.28
PTPRF-206ENST00000429895 ATP1A2P50993 1020 aa16.82■□□□□ 0.28
PTPRF-206ENST00000429895 CACNB1Q02641 598 aaPredicted RBP16.82■□□□□ 0.28
PTPRF-206ENST00000429895 CNKSR1Q969H4 720 aa16.82■□□□□ 0.28
PTPRF-206ENST00000429895 LARSQ9P2J5 1176 aaKnown RBP16.82■□□□□ 0.28
PTPRF-206ENST00000429895 ANGPTL3Q9Y5C1 460 aa16.82■□□□□ 0.28
PTPRF-206ENST00000429895 TRIM37O94972 964 aa16.82■□□□□ 0.28
PTPRF-206ENST00000429895 EEPD1Q7L9B9 569 aa16.82■□□□□ 0.28
PTPRF-206ENST00000429895 ZNF274Q96GC6 653 aaPredicted RBP16.82■□□□□ 0.28
PTPRF-206ENST00000429895 USP28Q96RU2 1077 aa16.82■□□□□ 0.28
PTPRF-206ENST00000429895 NCAPGQ9BPX3 1015 aa16.82■□□□□ 0.28
PTPRF-206ENST00000429895 A0A1B0GUA9 196 aa16.82■□□□□ 0.28
PTPRF-206ENST00000429895 BTBD18B2RXH4 712 aa16.82■□□□□ 0.28
PTPRF-206ENST00000429895 INO80B-WBP1J3KQ70 363 aa16.82■□□□□ 0.28
PTPRF-206ENST00000429895 POLR2BP30876 1174 aaKnown RBP16.82■□□□□ 0.28
PTPRF-206ENST00000429895 SLC12A1Q13621 1099 aa16.82■□□□□ 0.28
PTPRF-206ENST00000429895 MMEL1Q495T6 779 aa16.82■□□□□ 0.28
PTPRF-206ENST00000429895 INO80BQ9C086 356 aaPredicted RBP16.82■□□□□ 0.28
PTPRF-206ENST00000429895 PRKAG2Q9UGJ0 569 aa16.82■□□□□ 0.28
PTPRF-206ENST00000429895 SGK1O00141 431 aa16.82■□□□□ 0.28
PTPRF-206ENST00000429895 SLC16A2P36021 539 aa16.82■□□□□ 0.28
PTPRF-206ENST00000429895 MCTP2Q6DN12 878 aa16.82■□□□□ 0.28
PTPRF-206ENST00000429895 PI4K2BQ8TCG2 481 aa16.82■□□□□ 0.28
PTPRF-206ENST00000429895 ANKRD36BP1Q96IX9 119 aa16.82■□□□□ 0.28
PTPRF-206ENST00000429895 KIAA1468Q9P260 1216 aa16.82■□□□□ 0.28
PTPRF-206ENST00000429895 TYW5A2RUC4 315 aaKnown RBP16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms